Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005662

Physical Location & Seq

Genomic Coordinates Forward (+)

36570535 .. 36572056

Gene Structure 1522 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGTCCGGAGCACCGCCGCCACCGCCACCGCCACCGCCATTATTAACCTCCACCACCTCGCCACCTCACAACAACCGCTCGTTGACCGTGAAAACCTTAAGTCCGAGCATTCTCATCATCCTCCTCATCGTCGTCGTCACCGTAGTGGCTTCATTTTCCCTCTGCCGAATCCTCCGCTGCATCAACAACCGCTTCCTCCGCCACGCCACTCCCTCCTCCGGCGACGACGCACCCGCTCGAGCCTCCAGCCGGCGAGTCTCTCCTGCCGAATCCGCCGCCCCCGATCCCGTCGCCGCGCTCCCGGTCTTCGCCTTCTCCGCCATCAAGAACCGCCGAGCCTCCTCCACCGCCGTCGTCGCAGCCGACTGCGCCGTCTGCCTCTCGAAGTTCGAGCACGACGATCAGCTCCGGCTGCTCCCTCTCTGCTGTCACGCCTTCCACGTCTCGTGCATCGACACGTGGCTCCACTCCCAGCAGACCTGCCCGCTCTGCCGGTCGCCGATTTCCGCGTCCGACTCCGAGCTCATGACTCTCGTCGAGAATGCAGGCTCCTCCGCCCGAGGCGGCGGCGATAGCTTCCGGCTCGAGATTGGCAACGTCAGCCGCCGCCAAACAACTACGACGTCCAACTCCAGCGCGCGCCGCTCCTACTCCATCGGATCGTTCGACTACCTCGTGGACGACGACTCGGAGGTCCAATTGTCCAATGCCAGAAACGGCTCGTCTGATAGGAAAGAAGAGGTGATTGTCGTTCTCGGCGAGCCCCCGCAGCCGCCGCTGCCGTCGGAGGCCAGTCTAGCTGCTGACGTGGCCTCGGGAAGGAGCTGGCTCAAGGAATTCGTGGATAGACTCTCCAGCTCTTCTCGACGAAGCTCTGGCAGATTCTTTACAGGCAGTAGCCGTCGGAGTGAGATAGGCGGCACGGGAGAGTGGATATCGGAGTCCGGCCAAGTCGGCGTCGAGTTATCCGAGTATTTCCGGTGGTTATCGGAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

332

Amino Acids

35.63

Weight (kDa)

7.0

Isoelectric Point (pI)

74.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	122 - 165	8.7e-13	Ring finger domain
zf-RING_11	PF17123	122 - 151	8.6e-09	RING-like zinc finger
zf-rbx1	PF12678	132 - 165	3.7e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60220
fragaria_vesca	FvH4_7g08860
malus_domestica	MD02G1223200.v1.1 MD07G1091500.v1.1
prunus_persica	Prupe.2G116700_v2.0.a1
pyrus_communis	pycom07g07480 pycom15g32160
rosa_chinensis	RchiOBHm_Chr1g0344271 RchiOBHm_Chr7g0197351
rosa_laevigata	RLG00000003768 RLG00000015102 RLG00000019331 RLG00000025671 RLG00000028912
rosa_multiflora	Rmu_sc0000019.1_g000012 Rmu_sc0000338.1_g000018 Rmu_sc0003703.1_g000004 Rmu_sc0005991.1_g000007 Rmu_sc0016684.1_g000002 Rmu_sc0016685.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309960
rosa_rugosa	Rorug01G0172700
rosa_samantha	Rh1AG188600 Rh1BG155100 Rh1CG174400 Rh2CG262100 Rh3BG248600
rosa_wichuraiana	Rw1G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	371, 692
AatII	GACGTC	1 cut(s)	626
Acc36I	ACCTGC	1 cut(s)	488
AccBSI	CCGCTC	4 cut(s)	78, 236, 487, 645
AccII	CGCG	4 cut(s)	296, 509, 638, 640
AccIII	TCCGGA	1 cut(s)	5
AclWI	GGATC	2 cut(s)	278, 667
AcoI	YGGCCR	1 cut(s)	946
AcsI	RAATTY	1 cut(s)	836
AcvI	CACGTG	1 cut(s)	459
AcyI	GRCGYC	2 cut(s)	623, 957
AfiI	CCNNNNNNNGG	3 cut(s)	218, 249, 819
AflII	CTTAAG	1 cut(s)	97
AflIII	ACRYGT	1 cut(s)	456
AjiI	CACGTC	2 cut(s)	442, 808
AleI	CACNNNNGTG	1 cut(s)	143
AluBI	AGCT	7 cut(s)	406, 523, 576, 800, 825, 858, 873
AluI	AGCT	7 cut(s)	406, 523, 576, 800, 825, 858, 873
Alw21I	GWGCWC	3 cut(s)	13, 396, 525
Alw26I	GTCTC	2 cut(s)	262, 448
AlwI	GGATC	2 cut(s)	278, 667
Ama87I	CYCGRG	4 cut(s)	237, 558, 584, 814
Aor13HI	TCCGGA	1 cut(s)	5
AoxI	GGCC	3 cut(s)	789, 810, 946
ApeKI	GCWGC	6 cut(s)	177, 359, 412, 769, 778, 800
ApoI	RAATTY	1 cut(s)	836
AspLEI	GCGC	5 cut(s)	298, 371, 638, 640, 642
AspS9I	GGNCC	1 cut(s)	694
AsuC2I	CCSGG	1 cut(s)	302
AsuHPI	GGTGA	2 cut(s)	130, 754
AvaI	CYCGRG	4 cut(s)	237, 558, 584, 814
AvaII	GGWCC	1 cut(s)	694
BanII	GRGCYC	2 cut(s)	525, 765
BauI	CACGAG	2 cut(s)	445, 674
BbrPI	CACGTG	1 cut(s)	459
BbsI	GAAGAC	1 cut(s)	298
Bbv12I	GWGCWC	3 cut(s)	13, 396, 525
BbvI	GCAGC	6 cut(s)	164, 371, 399, 765, 781, 787
BccI	CCATC	2 cut(s)	329, 662
BceAI	ACGGC	5 cut(s)	335, 356, 733, 766, 885
BcnI	CCSGG	1 cut(s)	302
BcoDI	GTCTC	2 cut(s)	262, 448
BfaI	CTAG	1 cut(s)	797
BfrI	CTTAAG	1 cut(s)	97
BfuAI	ACCTGC	1 cut(s)	488
BglI	GCCNNNNNGGC	1 cut(s)	954
Bme1390I	CCNGG	1 cut(s)	302
Bme18I	GGWCC	1 cut(s)	694
BmeT110I	CYCGRG	4 cut(s)	237, 558, 584, 814
BmgBI	CACGTC	2 cut(s)	442, 808
BmgT120I	GGNCC	1 cut(s)	694
BmiI	GGNNCC	2 cut(s)	464, 550
BmrFI	CCNGG	1 cut(s)	302
BmsI	GCATC	2 cut(s)	189, 459
BoxI	GACNNNNGTC	1 cut(s)	533
BpiI	GAAGAC	1 cut(s)	298
BpmI	CTGGAG	3 cut(s)	229, 616, 838
BpuEI	CTTGAG	1 cut(s)	815
BpuMI	CCSGG	1 cut(s)	302
BsaAI	YACGTR	1 cut(s)	459
BsaHI	GRCGYC	2 cut(s)	623, 957
BsaJI	CCNNGG	2 cut(s)	559, 813
BsaWI	WCCGGW	2 cut(s)	5, 978
Bsc4I	CCNNNNNNNGG	3 cut(s)	218, 249, 819
Bse118I	RCCGGY	2 cut(s)	249, 492
Bse1I	ACTGG	1 cut(s)	792
BseAI	TCCGGA	1 cut(s)	5
BseDI	CCNNGG	2 cut(s)	559, 813
BseGI	GGATG	1 cut(s)	117
BseLI	CCNNNNNNNGG	3 cut(s)	218, 249, 819
BseNI	ACTGG	1 cut(s)	792
BsePI	GCGCGC	2 cut(s)	636, 638
BseRI	GAGGAG	4 cut(s)	113, 205, 331, 541
BseXI	GCAGC	6 cut(s)	164, 371, 399, 765, 781, 787
BseYI	CCCAGC	1 cut(s)	471
Bsh1236I	CGCG	4 cut(s)	296, 509, 638, 640
Bsh1285I	CGRYCG	1 cut(s)	497
BshFI	GGCC	3 cut(s)	791, 812, 948
BsiEI	CGRYCG	1 cut(s)	497
BsiHKAI	GWGCWC	3 cut(s)	13, 396, 525
BsiHKCI	CYCGRG	4 cut(s)	237, 558, 584, 814
BsiSI	CCGG	9 cut(s)	6, 219, 250, 302, 409, 493, 580, 945, 979
BslI	CCNNNNNNNGG	3 cut(s)	218, 249, 819
BsmAI	GTCTC	2 cut(s)	262, 448
BsmBI	CGTCTC	1 cut(s)	448
BsmI	GAATGC	2 cut(s)	108, 547
BsnI	GGCC	3 cut(s)	791, 812, 948
BsoBI	CYCGRG	4 cut(s)	237, 558, 584, 814
Bsp1286I	GDGCHC	4 cut(s)	13, 396, 525, 765
Bsp13I	TCCGGA	1 cut(s)	5
Bsp143I	GATC	3 cut(s)	283, 400, 659
BspANI	GGCC	3 cut(s)	791, 812, 948
BspEI	TCCGGA	1 cut(s)	5
BspFNI	CGCG	4 cut(s)	296, 509, 638, 640
BspHI	TCATGA	1 cut(s)	525
BspLI	GGNNCC	2 cut(s)	464, 550
BspMI	ACCTGC	1 cut(s)	488
BspPI	GGATC	2 cut(s)	278, 667
BspQI	GCTCTTC	1 cut(s)	865
BspTI	CTTAAG	1 cut(s)	97
BsrBI	CCGCTC	4 cut(s)	78, 236, 487, 645
BsrFI	RCCGGY	2 cut(s)	249, 492
BsrI	ACTGG	1 cut(s)	792
BssAI	RCCGGY	2 cut(s)	249, 492
BssECI	CCNNGG	2 cut(s)	559, 813
BssHII	GCGCGC	2 cut(s)	636, 638
BssMI	GATC	3 cut(s)	283, 400, 659
BssNI	GRCGYC	2 cut(s)	623, 957
BssSI	CACGAG	2 cut(s)	445, 674
Bst2BI	CACGAG	2 cut(s)	445, 674
Bst4CI	ACNGT	2 cut(s)	88, 142
Bst6I	CTCTTC	2 cut(s)	732, 865
BstACI	GRCGYC	2 cut(s)	623, 957
BstAFI	CTTAAG	1 cut(s)	97
BstBAI	YACGTR	1 cut(s)	459
BstC8I	GCNNGC	7 cut(s)	251, 485, 547, 638, 640, 761, 827
BstENI	CCTNNNNNAGG	1 cut(s)	817
BstF5I	GGATG	1 cut(s)	117
BstFNI	CGCG	4 cut(s)	296, 509, 638, 640
BstHHI	GCGC	5 cut(s)	298, 371, 638, 640, 642
BstKTI	GATC	3 cut(s)	286, 403, 662
BstMAI	GTCTC	2 cut(s)	262, 448
BstMBI	GATC	3 cut(s)	283, 400, 659
BstMCI	CGRYCG	1 cut(s)	497
BstPAI	GACNNNNGTC	1 cut(s)	533
BstSCI	CCNGG	1 cut(s)	300
BstUI	CGCG	4 cut(s)	296, 509, 638, 640
BstV1I	GCAGC	6 cut(s)	164, 371, 399, 765, 781, 787
BstV2I	GAAGAC	1 cut(s)	298
BsuRI	GGCC	3 cut(s)	791, 812, 948
BtrI	CACGTC	2 cut(s)	442, 808
BtsCI	GGATG	1 cut(s)	117
BveI	ACCTGC	1 cut(s)	488
Cac8I	GCNNGC	7 cut(s)	251, 485, 547, 638, 640, 761, 827
CciI	TCATGA	1 cut(s)	525
CfoI	GCGC	5 cut(s)	298, 371, 638, 640, 642
Cfr10I	RCCGGY	2 cut(s)	249, 492
Cfr13I	GGNCC	1 cut(s)	694
CseI	GACGC	3 cut(s)	236, 498, 946
CviAII	CATG	1 cut(s)	526
DpnI	GATC	3 cut(s)	285, 402, 661
DpnII	GATC	3 cut(s)	283, 400, 659
DrdI	GACNNNNNNGTC	2 cut(s)	371, 692
DseDI	GACNNNNNNGTC	2 cut(s)	371, 692
EaeI	YGGCCR	1 cut(s)	946
Eam1104I	CTCTTC	2 cut(s)	732, 865
EarI	CTCTTC	2 cut(s)	732, 865
EciI	GGCGGA	4 cut(s)	188, 262, 307, 544
Ecl136II	GAGCTC	1 cut(s)	523
Eco24I	GRGCYC	2 cut(s)	525, 765
Eco32I	GATATC	1 cut(s)	936
Eco47I	GGWCC	1 cut(s)	694
Eco53kI	GAGCTC	1 cut(s)	523
Eco72I	CACGTG	1 cut(s)	459
Eco88I	CYCGRG	4 cut(s)	237, 558, 584, 814
EcoICRI	GAGCTC	1 cut(s)	523
EcoNI	CCTNNNNNAGG	1 cut(s)	817
EcoRI	GAATTC	1 cut(s)	836
EcoRV	GATATC	1 cut(s)	936
EcoT38I	GRGCYC	2 cut(s)	525, 765
Esp3I	CGTCTC	1 cut(s)	448
FaeI	CATG	1 cut(s)	529
FaiI	YATR	2 cut(s)	527, 997
FatI	CATG	1 cut(s)	525
FauI	CCCGC	3 cut(s)	241, 492, 774
FokI	GGATG	1 cut(s)	104
FriOI	GRGCYC	2 cut(s)	525, 765
FspBI	CTAG	1 cut(s)	797
GlaI	GCGC	5 cut(s)	297, 370, 637, 639, 641
GsaI	CCCAGC	1 cut(s)	475
GsuI	CTGGAG	3 cut(s)	229, 616, 838
HaeIII	GGCC	3 cut(s)	791, 812, 948
HapII	CCGG	9 cut(s)	6, 219, 250, 302, 409, 493, 580, 945, 979
HgaI	GACGC	3 cut(s)	236, 498, 946
HhaI	GCGC	5 cut(s)	298, 371, 638, 640, 642
Hin1I	GRCGYC	2 cut(s)	623, 957
Hin1II	CATG	1 cut(s)	529
Hin6I	GCGC	5 cut(s)	296, 369, 636, 638, 640
HinP1I	GCGC	5 cut(s)	296, 369, 636, 638, 640
HincII	GTYRAC	1 cut(s)	84
HindII	GTYRAC	1 cut(s)	84
HinfI	GANTC	9 cut(s)	168, 255, 269, 515, 529, 686, 849, 882, 941
HpaII	CCGG	9 cut(s)	6, 219, 250, 302, 409, 493, 580, 945, 979
HphI	GGTGA	2 cut(s)	130, 754
Hpy166II	GTNNAC	2 cut(s)	84, 679
Hpy188III	TCNNGA	8 cut(s)	6, 325, 382, 526, 538, 586, 816, 864
Hpy8I	GTNNAC	2 cut(s)	84, 679
HpyAV	CCTTC	3 cut(s)	322, 445, 813
HpyCH4III	ACNGT	2 cut(s)	88, 142
HpyCH4IV	ACGT	5 cut(s)	441, 458, 597, 623, 807
HpyCH4V	TGCA	3 cut(s)	180, 450, 545
HpySE526I	ACGT	5 cut(s)	441, 458, 597, 623, 807
Hsp92I	GRCGYC	2 cut(s)	623, 957
Hsp92II	CATG	1 cut(s)	529
HspAI	GCGC	5 cut(s)	296, 369, 636, 638, 640
Kpn2I	TCCGGA	1 cut(s)	5
KroI	GCCGGC	1 cut(s)	249
KroNI	GCCGGC	1 cut(s)	251
Kzo9I	GATC	3 cut(s)	283, 400, 659
LguI	GCTCTTC	1 cut(s)	865
LmnI	GCTCC	8 cut(s)	8, 303, 411, 420, 468, 554, 650, 822
Lsp1109I	GCAGC	6 cut(s)	164, 371, 399, 765, 781, 787
LweI	GCATC	2 cut(s)	189, 459
MaeI	CTAG	1 cut(s)	797
MaeII	ACGT	5 cut(s)	441, 458, 597, 623, 807
MaeIII	GTNAC	2 cut(s)	136, 428
MalI	GATC	3 cut(s)	285, 402, 661
MbiI	CCGCTC	4 cut(s)	78, 236, 487, 645
MboI	GATC	3 cut(s)	283, 400, 659
MboII	GAAGA	3 cut(s)	298, 749, 852
MfeI	CAATTG	1 cut(s)	698
MhlI	GDGCHC	4 cut(s)	13, 396, 525, 765
MluCI	AATT	2 cut(s)	698, 836
MlyI	GAGTC	6 cut(s)	264, 509, 523, 680, 843, 950
MmeI	TCCRAC	4 cut(s)	537, 651, 765, 884
MroI	TCCGGA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	249
MseI	TTAA	2 cut(s)	44, 98
MslI	CAYNNNNRTG	1 cut(s)	143
MspA1I	CMGCKG	2 cut(s)	177, 778
MspCI	CTTAAG	1 cut(s)	97
MspI	CCGG	9 cut(s)	6, 219, 250, 302, 409, 493, 580, 945, 979
MspR9I	CCNGG	1 cut(s)	302
MunI	CAATTG	1 cut(s)	698
Mva1269I	GAATGC	2 cut(s)	108, 547
MvnI	CGCG	4 cut(s)	296, 509, 638, 640
NaeI	GCCGGC	1 cut(s)	251
NciI	CCSGG	1 cut(s)	302
NdeII	GATC	3 cut(s)	283, 400, 659
NgoMIV	GCCGGC	1 cut(s)	249
NlaIII	CATG	1 cut(s)	529
NlaIV	GGNNCC	2 cut(s)	464, 550
NmeAIII	GCCGAG	2 cut(s)	359, 735
NmuCI	GTSAC	2 cut(s)	136, 428
OliI	CACNNNNGTG	1 cut(s)	143
PaeR7I	CTCGAG	2 cut(s)	237, 584
PagI	TCATGA	1 cut(s)	525
PauI	GCGCGC	2 cut(s)	636, 638
PciSI	GCTCTTC	1 cut(s)	865
PcsI	WCGNNNNNNNCGW	9 cut(s)	138, 360, 396, 438, 663, 672, 681, 756, 966
PctI	GAATGC	2 cut(s)	108, 547
PdiI	GCCGGC	1 cut(s)	251
PfeI	GAWTC	3 cut(s)	168, 269, 882
PleI	GAGTC	6 cut(s)	263, 509, 523, 680, 843, 949
PmaCI	CACGTG	1 cut(s)	459
PmlI	CACGTG	1 cut(s)	459
PpsI	GAGTC	6 cut(s)	263, 509, 523, 680, 843, 949
Ppu21I	YACGTR	1 cut(s)	459
PshAI	GACNNNNGTC	1 cut(s)	533
Psp124BI	GAGCTC	1 cut(s)	525
PspCI	CACGTG	1 cut(s)	459
PspFI	CCCAGC	1 cut(s)	471
PspN4I	GGNNCC	2 cut(s)	464, 550
PspPI	GGNCC	1 cut(s)	694
PspXI	VCTCGAGB	1 cut(s)	237
PteI	GCGCGC	2 cut(s)	636, 638
RseI	CAYNNNNRTG	1 cut(s)	143
SacI	GAGCTC	1 cut(s)	525
SapI	GCTCTTC	1 cut(s)	865
SaqAI	TTAA	2 cut(s)	44, 98
Sau3AI	GATC	3 cut(s)	283, 400, 659
Sau96I	GGNCC	1 cut(s)	694
SchI	GAGTC	6 cut(s)	264, 509, 523, 680, 843, 950
ScrFI	CCNGG	1 cut(s)	302
SduI	GDGCHC	4 cut(s)	13, 396, 525, 765
SfaNI	GCATC	2 cut(s)	189, 459
Sfr274I	CTCGAG	2 cut(s)	237, 584
SinI	GGWCC	1 cut(s)	694
SlaI	CTCGAG	2 cut(s)	237, 584
SmiMI	CAYNNNNRTG	1 cut(s)	143
SmlI	CTYRAG	4 cut(s)	97, 237, 584, 830
SmoI	CTYRAG	4 cut(s)	97, 237, 584, 830
Sse9I	AATT	2 cut(s)	698, 836
SspMI	CTAG	1 cut(s)	797
SstI	GAGCTC	1 cut(s)	525
StyD4I	CCNGG	1 cut(s)	300
TaaI	ACNGT	2 cut(s)	88, 142
TaiI	ACGT	5 cut(s)	444, 461, 600, 626, 810
TaqI	TCGA	9 cut(s)	238, 383, 390, 453, 537, 585, 666, 865, 960
TasI	AATT	2 cut(s)	698, 836
TfiI	GAWTC	3 cut(s)	168, 269, 882
Tru1I	TTAA	2 cut(s)	44, 98
Tru9I	TTAA	2 cut(s)	44, 98
TseFI	GTSAC	2 cut(s)	136, 428
TseI	GCWGC	6 cut(s)	177, 359, 412, 769, 778, 800
Tsp45I	GTSAC	2 cut(s)	136, 428
TspDTI	ATGAA	1 cut(s)	141
Vha464I	CTTAAG	1 cut(s)	97
VpaK11BI	GGWCC	1 cut(s)	694
XagI	CCTNNNNNAGG	1 cut(s)	817
XapI	RAATTY	1 cut(s)	836
XhoI	CTCGAG	2 cut(s)	237, 584
XspI	CTAG	1 cut(s)	797
ZraI	GACGTC	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.