RchiOBHm_Chr1g0344501
RLK Family

cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003287
Physical Location & Seq
Forward (+)
36858809 .. 36859300
492 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 492 bp
ATGTTCTGGTTTCATGCTGTGCCTCATTTTGCTTATCTCATCAATAGAATGCCCTGTAGATCTCTTAAAATGTCTTCTCCATACATTGAGTTGTTTGGATTTGCTCCTGATCTTTCATTTCTTAAGATTTTTGGTACTGCTTGTTATCCTTTTCTCAGACCCTACAGTCATGACAAACTTGAACCTCGTTCTTCATGTTGTGTCTTTCTTGGTTATGCTTTAGGATACAAAGGTGTGTTTTGTTACAATGTTGAGAAAAATAAGTTGTGGATGTCCAGACATGTTGTTCATGATGAGACAATTTTTCCATATCATATTACCCCTGCTTCTAAGTCCACTGCATCTTCATCTTCTTCTAGGCCTTGTCAATCTTCTGCCTCCTATCAATACTCAGTGCCTAGTTCCTTTGTTTCTCCTGCTCCATCCTCTCCTATTCAGTCCCCTATGTTACCTATCCTTCAGGTAGTTTTACCCTTTGACTCTCCTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

163

Amino Acids

18.38

Weight (kDa)

8.92

Isoelectric Point (pI)

92.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_retrovirus PF25597 47 - 107 2.4e-16 Retroviral polymerase SH3-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 165
AcuI CTGAAG 1 cut(s) 443
AfaI GTAC 1 cut(s) 136
AflII CTTAAG 1 cut(s) 122
AflIII ACRYGT 1 cut(s) 280
AgsI TTSAA 1 cut(s) 182
Alw26I GTCTC 1 cut(s) 290
AoxI GGCC 1 cut(s) 359
BaeI ACNNNNGTAYC 2 cut(s) 217, 250
BbsI GAAGAC 1 cut(s) 66
BccI CCATC 1 cut(s) 430
BciVI GTATCC 1 cut(s) 218
BcoDI GTCTC 1 cut(s) 290
BfaI CTAG 3 cut(s) 357, 399, 490
BfmI CTRYAG 2 cut(s) 55, 163
BfrI CTTAAG 1 cut(s) 122
BfuI GTATCC 1 cut(s) 218
BglII AGATCT 1 cut(s) 59
BmsI GCATC 1 cut(s) 350
BpiI GAAGAC 1 cut(s) 66
BseGI GGATG 2 cut(s) 276, 422
BseMII CTCAG 2 cut(s) 169, 405
BshFI GGCC 1 cut(s) 361
BslFI GGGAC 1 cut(s) 424
BsmAI GTCTC 1 cut(s) 290
BsmFI GGGAC 1 cut(s) 424
BsmI GAATGC 1 cut(s) 54
BsnI GGCC 1 cut(s) 361
Bsp143I GATC 2 cut(s) 59, 109
BspANI GGCC 1 cut(s) 361
BspCNI CTCAG 2 cut(s) 168, 404
BspHI TCATGA 2 cut(s) 169, 289
BspTI CTTAAG 1 cut(s) 122
BssMI GATC 2 cut(s) 59, 109
Bst4CI ACNGT 1 cut(s) 167
BstAFI CTTAAG 1 cut(s) 122
BstDEI CTNAG 3 cut(s) 155, 330, 391
BstF5I GGATG 2 cut(s) 276, 422
BstKTI GATC 2 cut(s) 62, 112
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 2 cut(s) 59, 109
BstNSI RCATGY 1 cut(s) 284
BstSFI CTRYAG 2 cut(s) 55, 163
BstV2I GAAGAC 1 cut(s) 66
BstX2I RGATCY 1 cut(s) 59
BstYI RGATCY 1 cut(s) 59
BsuI GTATCC 1 cut(s) 218
BsuRI GGCC 1 cut(s) 361
BtsCI GGATG 2 cut(s) 276, 422
BtsI GCAGTG 1 cut(s) 336
BtsIMutI CAGTG 2 cut(s) 336, 399
CciI TCATGA 2 cut(s) 169, 289
Csp6I GTAC 1 cut(s) 135
CviAII CATG 5 cut(s) 14, 170, 195, 281, 290
CviJI RGCY 1 cut(s) 361
CviKI_1 RGCY 1 cut(s) 361
CviQI GTAC 1 cut(s) 135
DdeI CTNAG 3 cut(s) 155, 330, 391
DpnI GATC 2 cut(s) 61, 111
DpnII GATC 2 cut(s) 59, 109
DrdI GACNNNNNNGTC 1 cut(s) 165
DseDI GACNNNNNNGTC 1 cut(s) 165
Eco147I AGGCCT 1 cut(s) 361
Eco57I CTGAAG 1 cut(s) 443
FaeI CATG 5 cut(s) 17, 173, 198, 284, 293
FaqI GGGAC 1 cut(s) 424
FatI CATG 5 cut(s) 13, 169, 194, 280, 289
FokI GGATG 2 cut(s) 283, 409
FspBI CTAG 3 cut(s) 357, 399, 490
HaeIII GGCC 1 cut(s) 361
Hin1II CATG 5 cut(s) 17, 173, 198, 284, 293
HinfI GANTC 1 cut(s) 479
Hpy166II GTNNAC 1 cut(s) 336
Hpy188I TCNGA 1 cut(s) 158
Hpy188III TCNNGA 4 cut(s) 107, 170, 276, 290
Hpy8I GTNNAC 1 cut(s) 336
HpyAV CCTTC 1 cut(s) 467
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4V TGCA 1 cut(s) 341
HpyF3I CTNAG 3 cut(s) 155, 330, 391
Hsp92II CATG 5 cut(s) 17, 173, 198, 284, 293
Kzo9I GATC 2 cut(s) 59, 109
LmnI GCTCC 2 cut(s) 109, 424
LpnPI CCDG 6 cut(s) 67, 120, 289, 336, 429, 446
LweI GCATC 1 cut(s) 350
MaeI CTAG 3 cut(s) 357, 399, 490
MaeIII GTNAC 2 cut(s) 242, 447
MalI GATC 2 cut(s) 61, 111
MboI GATC 2 cut(s) 59, 109
MboII GAAGA 6 cut(s) 66, 183, 336, 342, 345, 363
MflI RGATCY 1 cut(s) 59
MluCI AATT 1 cut(s) 300
MlyI GAGTC 1 cut(s) 473
MnlI CCTC 4 cut(s) 33, 195, 388, 436
MseI TTAA 2 cut(s) 66, 123
MspCI CTTAAG 1 cut(s) 122
Mva1269I GAATGC 1 cut(s) 54
NdeII GATC 2 cut(s) 59, 109
NlaIII CATG 5 cut(s) 17, 173, 198, 284, 293
NspI RCATGY 1 cut(s) 284
PagI TCATGA 2 cut(s) 169, 289
PceI AGGCCT 1 cut(s) 361
PciI ACATGT 1 cut(s) 280
PctI GAATGC 1 cut(s) 54
PleI GAGTC 1 cut(s) 473
PpsI GAGTC 1 cut(s) 473
PscI ACATGT 1 cut(s) 280
PsuI RGATCY 1 cut(s) 59
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
SaqAI TTAA 2 cut(s) 66, 123
Sau3AI GATC 2 cut(s) 59, 109
SchI GAGTC 1 cut(s) 473
SetI ASST 4 cut(s) 187, 235, 454, 465
SfaNI GCATC 1 cut(s) 350
SfcI CTRYAG 2 cut(s) 55, 163
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 1 cut(s) 300
SseBI AGGCCT 1 cut(s) 361
SspMI CTAG 3 cut(s) 357, 399, 490
StuI AGGCCT 1 cut(s) 361
TaaI ACNGT 1 cut(s) 167
TasI AATT 1 cut(s) 300
Tru1I TTAA 2 cut(s) 66, 123
Tru9I TTAA 2 cut(s) 66, 123
TscAI CASTG 2 cut(s) 343, 399
TspDTI ATGAA 4 cut(s) 105, 183, 278, 336
TspRI CASTG 2 cut(s) 343, 399
Vha464I CTTAAG 1 cut(s) 122
XceI RCATGY 1 cut(s) 284
XspI CTAG 3 cut(s) 357, 399, 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.