RchiOBHm_Chr1g0357021

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003426
Physical Location & Seq
Forward (+)
49412207 .. 49414052
1846 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 879 bp
ATGGTCAGGATCCGCAAGAACTTGAAGGTGTCGCCGCTCCAGTTCTTCCCCAACGTAGCTCCTGAGGACCTGCAGCCCCACATCTGCAAGCTGAACCAGTCTCCTTGGGATTCGAGCCCCTGCCCTTTCGACCTCCTCCTCGACTCGTCGCCGCTCCAGTTCGAAGCTGGGGAGGGTTTTATCGGAAATGGGAGCTTGGGGGATTCTATTGCAGCTGTCGAGAGCGTTGCGTCGCCGATGGATATCGACAAGGCAGAAATGGCGACCGGCGATGTGTTGGATAACGTCGACAGAGCAATTGTGAGGTGTCAGAAGAACGACGGCAGGAGCTGGCAATGCAAGAAGGAAGCGAAAGAAGGCTTCTTATTTTGTGACCATCATATCCGAAGGTCGTCCTATGGTAACAACAACGTTACTAGCAATGGCAATATTCTTCCCTCCAACTTTGTGGCTTCGAAGAAGGACACGGCGGCGGCCCCGGCCAAGACTCTAGCCGGAACCCGTCGTGCCAGACCCAAGGCAGTGAAGAAGGGGGCGTCGTCGGCGAACCCGTATGAGTTCTACTACTATTCGGGGTTCGGCCCAAAATGGGGCCGAAAGAGAGGCAAGAAAGGCGAGGTGGTGGTGGAGGAGGAGGAGGCCAATAATATTGAGTCAGCAGCTGGAAATGTTGCAACTTCTTGTAGTACTAGTAGTGCCAACACCGATCCCCAACCTTCTTCACCTCACAACGTTGGTAATGGGGATCAATTGGACTACATGGAAGACGACTTCGACGACGAGGATGGGAGCGACGAAGAAGGCGGCCCGAGGAGGATGAGGAGGCCGGTGAAGGCTCGATCCTTGATGTCCATAATTAATGTAAAAGCTCAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WRC

Protein Analysis

292

Amino Acids

31.83

Weight (kDa)

5.73

Isoelectric Point (pI)

65.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRC PF08879 101 - 134 3.2e-09 WRC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 78
AccBSI CCGCTC 2 cut(s) 37, 154
AccI GTMKAC 1 cut(s) 288
AciI CCGC 6 cut(s) 13, 35, 152, 470, 473, 804
AclI AACGTT 2 cut(s) 411, 732
AclWI GGATC 5 cut(s) 4, 17, 701, 753, 834
AcoI YGGCCR 1 cut(s) 480
AcyI GRCGYC 1 cut(s) 536
AfaI GTAC 1 cut(s) 688
AfiI CCNNNNNNNGG 2 cut(s) 589, 590
AgsI TTSAA 1 cut(s) 25
AhlI ACTAGT 1 cut(s) 689
AluBI AGCT 8 cut(s) 59, 91, 167, 195, 215, 330, 662, 869
AluI AGCT 8 cut(s) 59, 91, 167, 195, 215, 330, 662, 869
Alw26I GTCTC 1 cut(s) 105
AlwI GGATC 5 cut(s) 4, 17, 701, 753, 834
AlwNI CAGNNNCTG 2 cut(s) 330, 662
Ama87I CYCGRG 1 cut(s) 808
AoxI GGCC 7 cut(s) 474, 480, 580, 592, 639, 805, 824
ApeKI GCWGC 3 cut(s) 73, 212, 659
AseI ATTAAT 1 cut(s) 858
AspS9I GGNCC 5 cut(s) 67, 475, 581, 592, 806
AsuC2I CCSGG 1 cut(s) 479
AsuHPI GGTGA 2 cut(s) 714, 841
AsuII TTCGAA 2 cut(s) 162, 455
AvaI CYCGRG 1 cut(s) 808
AvaII GGWCC 1 cut(s) 67
AxyI CCTNAGG 1 cut(s) 63
BamHI GGATCC 1 cut(s) 9
BanII GRGCYC 1 cut(s) 119
BbsI GAAGAC 1 cut(s) 771
BbvI GCAGC 3 cut(s) 85, 224, 671
BccI CCATC 3 cut(s) 232, 384, 779
BceAI ACGGC 2 cut(s) 337, 483
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BcnI CCSGG 1 cut(s) 479
BcoDI GTCTC 1 cut(s) 105
BcuI ACTAGT 1 cut(s) 689
BfaI CTAG 3 cut(s) 417, 491, 690
BfmI CTRYAG 1 cut(s) 71
BfuAI ACCTGC 1 cut(s) 78
BisI GCNGC 8 cut(s) 35, 74, 152, 213, 471, 474, 660, 805
BlsI GCNGC 8 cut(s) 36, 75, 153, 214, 472, 475, 661, 806
BmcAI AGTACT 1 cut(s) 688
Bme1390I CCNGG 1 cut(s) 479
Bme18I GGWCC 1 cut(s) 67
BmeT110I CYCGRG 1 cut(s) 808
BmgT120I GGNCC 5 cut(s) 67, 475, 581, 592, 806
BmiI GGNNCC 4 cut(s) 11, 477, 499, 593
BmrFI CCNGG 1 cut(s) 479
BpiI GAAGAC 1 cut(s) 771
BpmI CTGGAG 2 cut(s) 23, 140
Bpu14I TTCGAA 2 cut(s) 162, 455
BpuEI CTTGAG 1 cut(s) 855
BpuMI CCSGG 1 cut(s) 479
BsaBI GATNNNNATC 1 cut(s) 242
BsaHI GRCGYC 1 cut(s) 536
BsaJI CCNNGG 4 cut(s) 104, 477, 516, 809
Bsc4I CCNNNNNNNGG 2 cut(s) 589, 590
Bse118I RCCGGY 2 cut(s) 266, 826
Bse1I ACTGG 3 cut(s) 40, 97, 157
Bse21I CCTNAGG 1 cut(s) 63
Bse3DI GCAATG 2 cut(s) 341, 427
Bse8I GATNNNNATC 1 cut(s) 242
BseDI CCNNGG 4 cut(s) 104, 477, 516, 809
BseGI GGATG 2 cut(s) 790, 822
BseJI GATNNNNATC 1 cut(s) 242
BseLI CCNNNNNNNGG 2 cut(s) 589, 590
BseMI GCAATG 2 cut(s) 341, 427
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 3 cut(s) 40, 97, 157
BseRI GAGGAG 7 cut(s) 125, 128, 644, 647, 650, 826, 835
BseXI GCAGC 3 cut(s) 85, 224, 671
BseYI CCCAGC 1 cut(s) 167
Bsh1285I CGRYCG 1 cut(s) 267
BshFI GGCC 7 cut(s) 476, 482, 582, 594, 641, 807, 826
BsiEI CGRYCG 1 cut(s) 267
BsiHKCI CYCGRG 1 cut(s) 808
BsiSI CCGG 4 cut(s) 267, 479, 495, 827
BslI CCNNNNNNNGG 2 cut(s) 589, 590
BsmAI GTCTC 1 cut(s) 105
BsnI GGCC 7 cut(s) 476, 482, 582, 594, 641, 807, 826
BsoBI CYCGRG 1 cut(s) 808
Bsp119I TTCGAA 2 cut(s) 162, 455
Bsp1286I GDGCHC 1 cut(s) 119
Bsp143I GATC 4 cut(s) 9, 706, 745, 839
BspACI CCGC 6 cut(s) 13, 35, 152, 470, 473, 804
BspANI GGCC 7 cut(s) 476, 482, 582, 594, 641, 807, 826
BspCNI CTCAG 1 cut(s) 55
BspLI GGNNCC 4 cut(s) 11, 477, 499, 593
BspMAI CTGCAG 1 cut(s) 75
BspMI ACCTGC 1 cut(s) 78
BspPI GGATC 5 cut(s) 4, 17, 701, 753, 834
BspT104I TTCGAA 2 cut(s) 162, 455
BsrBI CCGCTC 2 cut(s) 37, 154
BsrDI GCAATG 2 cut(s) 341, 427
BsrFI RCCGGY 2 cut(s) 266, 826
BsrI ACTGG 3 cut(s) 40, 97, 157
BssAI RCCGGY 2 cut(s) 266, 826
BssECI CCNNGG 4 cut(s) 104, 477, 516, 809
BssMI GATC 4 cut(s) 9, 706, 745, 839
BssNI GRCGYC 1 cut(s) 536
BssT1I CCWWGG 2 cut(s) 104, 516
BstACI GRCGYC 1 cut(s) 536
BstBI TTCGAA 2 cut(s) 162, 455
BstC8I GCNNGC 2 cut(s) 89, 332
BstDEI CTNAG 1 cut(s) 63
BstF5I GGATG 2 cut(s) 790, 822
BstKTI GATC 4 cut(s) 12, 709, 748, 842
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 4 cut(s) 9, 706, 745, 839
BstMCI CGRYCG 1 cut(s) 267
BstMWI GCNNNNNNNGC 5 cut(s) 260, 336, 479, 542, 612
BstSCI CCNGG 1 cut(s) 477
BstSFI CTRYAG 1 cut(s) 71
BstV1I GCAGC 3 cut(s) 85, 224, 671
BstV2I GAAGAC 1 cut(s) 771
BstX2I RGATCY 1 cut(s) 9
BstXI CCANNNNNNTGG 1 cut(s) 448
BstYI RGATCY 1 cut(s) 9
Bsu36I CCTNAGG 1 cut(s) 63
BsuRI GGCC 7 cut(s) 476, 482, 582, 594, 641, 807, 826
BtgZI GCGATG 1 cut(s) 285
BtsCI GGATG 2 cut(s) 790, 822
BtsI GCAGTG 1 cut(s) 528
BtsIMutI CAGTG 1 cut(s) 528
BveI ACCTGC 1 cut(s) 78
Cac8I GCNNGC 2 cut(s) 89, 332
CaiI CAGNNNCTG 2 cut(s) 330, 662
Cfr10I RCCGGY 2 cut(s) 266, 826
Cfr13I GGNCC 5 cut(s) 67, 475, 581, 592, 806
CseI GACGC 2 cut(s) 219, 525
Csp6I GTAC 1 cut(s) 687
CviAII CATG 1 cut(s) 760
CviQI GTAC 1 cut(s) 687
DdeI CTNAG 1 cut(s) 63
DpnI GATC 4 cut(s) 11, 708, 747, 841
DpnII GATC 4 cut(s) 9, 706, 745, 839
EaeI YGGCCR 1 cut(s) 480
Eco130I CCWWGG 2 cut(s) 104, 516
Eco24I GRGCYC 1 cut(s) 119
Eco32I GATATC 1 cut(s) 244
Eco47I GGWCC 1 cut(s) 67
Eco81I CCTNAGG 1 cut(s) 63
Eco88I CYCGRG 1 cut(s) 808
EcoO109I RGGNCCY 1 cut(s) 67
EcoRV GATATC 1 cut(s) 244
EcoT14I CCWWGG 2 cut(s) 104, 516
EcoT38I GRGCYC 1 cut(s) 119
ErhI CCWWGG 2 cut(s) 104, 516
FaeI CATG 1 cut(s) 763
FaiI YATR 5 cut(s) 381, 399, 555, 761, 854
FatI CATG 1 cut(s) 759
FblI GTMKAC 1 cut(s) 288
Fnu4HI GCNGC 8 cut(s) 35, 74, 152, 213, 471, 474, 660, 805
FokI GGATG 2 cut(s) 797, 829
FriOI GRGCYC 1 cut(s) 119
Fsp4HI GCNGC 8 cut(s) 35, 74, 152, 213, 471, 474, 660, 805
FspBI CTAG 3 cut(s) 417, 491, 690
GluI GCNGC 8 cut(s) 35, 74, 152, 213, 471, 474, 660, 805
GsaI CCCAGC 1 cut(s) 171
GsuI CTGGAG 2 cut(s) 23, 140
HaeIII GGCC 7 cut(s) 476, 482, 582, 594, 641, 807, 826
HapII CCGG 4 cut(s) 267, 479, 495, 827
HgaI GACGC 2 cut(s) 219, 525
Hin1I GRCGYC 1 cut(s) 536
Hin1II CATG 1 cut(s) 763
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HinfI GANTC 5 cut(s) 110, 143, 203, 487, 653
HpaII CCGG 4 cut(s) 267, 479, 495, 827
HphI GGTGA 2 cut(s) 714, 841
Hpy166II GTNNAC 1 cut(s) 289
Hpy188I TCNGA 3 cut(s) 185, 312, 386
Hpy188III TCNNGA 4 cut(s) 7, 62, 220, 872
Hpy8I GTNNAC 1 cut(s) 289
HpyAV CCTTC 9 cut(s) 19, 337, 350, 381, 454, 523, 726, 794, 826
HpyCH4IV ACGT 4 cut(s) 54, 285, 411, 732
HpyCH4V TGCA 5 cut(s) 73, 87, 212, 339, 674
HpyF10VI GCNNNNNNNGC 5 cut(s) 260, 336, 479, 542, 612
HpyF3I CTNAG 1 cut(s) 63
HpySE526I ACGT 4 cut(s) 54, 285, 411, 732
Hsp92I GRCGYC 1 cut(s) 536
Hsp92II CATG 1 cut(s) 763
Kzo9I GATC 4 cut(s) 9, 706, 745, 839
LmnI GCTCC 6 cut(s) 42, 64, 159, 192, 327, 789
Lsp1109I GCAGC 3 cut(s) 85, 224, 671
MaeI CTAG 3 cut(s) 417, 491, 690
MaeII ACGT 4 cut(s) 54, 285, 411, 732
MaeIII GTNAC 3 cut(s) 371, 401, 412
MalI GATC 4 cut(s) 11, 708, 747, 841
MbiI CCGCTC 2 cut(s) 37, 154
MboI GATC 4 cut(s) 9, 706, 745, 839
MboII GAAGA 8 cut(s) 37, 325, 425, 469, 538, 711, 776, 809
MfeI CAATTG 2 cut(s) 297, 749
MflI RGATCY 1 cut(s) 9
MhlI GDGCHC 1 cut(s) 119
MluCI AATT 3 cut(s) 297, 749, 855
MlyI GAGTC 3 cut(s) 137, 481, 662
MmeI TCCRAC 2 cut(s) 258, 465
MseI TTAA 1 cut(s) 858
MspA1I CMGCKG 2 cut(s) 215, 662
MspI CCGG 4 cut(s) 267, 479, 495, 827
MspR9I CCNGG 1 cut(s) 479
MunI CAATTG 2 cut(s) 297, 749
MwoI GCNNNNNNNGC 5 cut(s) 260, 336, 479, 542, 612
NciI CCSGG 1 cut(s) 479
NdeII GATC 4 cut(s) 9, 706, 745, 839
NlaIII CATG 1 cut(s) 763
NlaIV GGNNCC 4 cut(s) 11, 477, 499, 593
NmuCI GTSAC 1 cut(s) 371
NspV TTCGAA 2 cut(s) 162, 455
PcsI WCGNNNNNNNCGW 2 cut(s) 548, 774
PfeI GAWTC 2 cut(s) 110, 203
PkrI GCNGC 8 cut(s) 36, 75, 153, 214, 472, 475, 661, 806
PleI GAGTC 3 cut(s) 137, 481, 661
PpsI GAGTC 3 cut(s) 137, 481, 661
PpuMI RGGWCCY 1 cut(s) 67
PshBI ATTAAT 1 cut(s) 858
Psp1406I AACGTT 2 cut(s) 411, 732
Psp5II RGGWCCY 1 cut(s) 67
PspFI CCCAGC 1 cut(s) 167
PspN4I GGNNCC 4 cut(s) 11, 477, 499, 593
PspPI GGNCC 5 cut(s) 67, 475, 581, 592, 806
PspPPI RGGWCCY 1 cut(s) 67
PstI CTGCAG 1 cut(s) 75
PstNI CAGNNNCTG 2 cut(s) 330, 662
PsuI RGATCY 1 cut(s) 9
PvuII CAGCTG 2 cut(s) 215, 662
RsaI GTAC 1 cut(s) 688
RsaNI GTAC 1 cut(s) 687
SalI GTCGAC 1 cut(s) 287
SaqAI TTAA 1 cut(s) 858
SatI GCNGC 8 cut(s) 35, 74, 152, 213, 471, 474, 660, 805
Sau3AI GATC 4 cut(s) 9, 706, 745, 839
Sau96I GGNCC 5 cut(s) 67, 475, 581, 592, 806
ScaI AGTACT 1 cut(s) 688
SchI GAGTC 3 cut(s) 137, 481, 662
ScrFI CCNGG 1 cut(s) 479
SduI GDGCHC 1 cut(s) 119
SfcI CTRYAG 1 cut(s) 71
SfuI TTCGAA 2 cut(s) 162, 455
SinI GGWCC 1 cut(s) 67
SmlI CTYRAG 1 cut(s) 870
SmoI CTYRAG 1 cut(s) 870
SpeI ACTAGT 1 cut(s) 689
Sse9I AATT 3 cut(s) 297, 749, 855
SsiI CCGC 6 cut(s) 13, 35, 152, 470, 473, 804
SspI AATATT 2 cut(s) 430, 649
SspMI CTAG 3 cut(s) 417, 491, 690
StyD4I CCNGG 1 cut(s) 477
StyI CCWWGG 2 cut(s) 104, 516
TaiI ACGT 4 cut(s) 57, 288, 414, 735
TasI AATT 3 cut(s) 297, 749, 855
TatI WGTACW 1 cut(s) 686
TauI GCSGC 5 cut(s) 37, 154, 473, 476, 807
TfiI GAWTC 2 cut(s) 110, 203
Tru1I TTAA 1 cut(s) 858
Tru9I TTAA 1 cut(s) 858
TscAI CASTG 1 cut(s) 528
TseFI GTSAC 1 cut(s) 371
TseI GCWGC 3 cut(s) 73, 212, 659
Tsp45I GTSAC 1 cut(s) 371
TspRI CASTG 1 cut(s) 528
VpaK11BI GGWCC 1 cut(s) 67
VspI ATTAAT 1 cut(s) 858
XcmI CCANNNNNNNNNTGG 1 cut(s) 164
XmiI GTMKAC 1 cut(s) 288
XspI CTAG 3 cut(s) 417, 491, 690
ZrmI AGTACT 1 cut(s) 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.