Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005244

Physical Location & Seq

Genomic Coordinates Forward (+)

53164373 .. 53181657

Gene Structure 17285 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGATGGAATCAGAGAATACACAACATTCCCAGATTATTGAGATCCATGGAGATGCTCCTGGTGAAGAGACGAGTGTGGGTGGGAGTAAGATTTGTGGGGAAGCACCGTGTGGACTGTCGGATGTTGGACCACATTCTAAAGATTCCAAAGAACGATCAGCTGCCATGCGCAAGCTCTTGATAGCAGTGGTACTCTGTGTTCTCTTCATGGGTGTTGAAGTGTTTGGTGGCATTGAAGCCAATAGCTTAGCAATATTGACTGATGCAGCACATTTGCTCTCTGATGTTGCAGCCTTTGCCATCTCCTTGTTCTCCTTGTGGGCTGCTGGCTGGGAAACCACTCCCCGTCAGTCTTACGGCTTTTTCAGGATTGAGATTCTCGGTGCTTTGGTTTCTATCCAACTCATATGGTTGCTTGCTGGGATATTGGTGTATGAAGCCATTGTTAGAATGATTAATAACACATCTGATGTGAATGGTTTTCTGATGTTTCTTGTTGCTGCATTTGGTCTAGTGGTTAATATTGGCATGGCTGTACTGTTAGGCCATGATCATGGTCATGATCATGGCCATGGCCATGGTCATGATCATGGCCATGGCCATGGACATGATGATCATGATCATCACAGCCATGGAATGACATTTTCTACTCATCATCACCATCGCCATGAGGAACACTCGAATGACGAGCACCATCATGATCATGAAGAACACTCGCATGATGAACACCAGCACAGTCATGATGATTATAAACACAATGGTGCTGATGAAGGTCATGCTCATGAGCCACTCTTGGACAAGCCAAAAGACGGGCATGGCCAGAAGAAGCAACGGAACATAAACGTGCAGGGAGCTTACCTTCATGTTCTTGGGGACTTGGTTCAAAGTATCGGTGTAATGATTGGTGGGGCCATCATATGGTACAAGCCGGAATGGAAGATAGTTGATTTGATTTGCACCCTAATATTTTCTGTCATTGTTTTGGGGACAACTTTCAAGATGATGAGGAACATACTCGATGTACTGATGGAGAGCACACCAAGAGAGATTGATGCAACAAAACTTGAGAAGGGGCTGTTGGAGATGGAAGAAGTGGTGGAAATCCATGAGCTGCATATATGGGCAATCACAGTTGGGAAAGTCCTGCTGGCTTGCCATGTGAAAATCAGACCTGAAGCAAATGCAGACATGGTGCTGGACAAAGTGATTGATTATATCAGAAGGGAGTACAACATCAGCCATGTGACTATACAAGTTGAGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006882 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031090 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072503 GO:0072507 GO:0072509 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

421

Amino Acids

46.86

Weight (kDa)

5.75

Isoelectric Point (pI)

29.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	59 - 343	4.6e-35	Cation efflux transmembrane domain
ZT_dimer	PF16916	347 - 420	9.5e-13	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT3G61940
fragaria_vesca	FvH4_7g17780
malus_domestica	MD01G1089100.v1.1 MD07G1160600.v1.1
prunus_persica	Prupe.2G198700_v2.0.a1 Prupe.2G198700_v2.0.a1
pyrus_communis	pycom01g11340 pycom07g15660
rosa_chinensis	RchiOBHm_Chr1g0361171
rosa_laevigata	RLG00000027742 RLG00000027743
rosa_multiflora	Rmu_sc0001816.1_g000005 Rmu_sc0001816.1_g000011 Rmu_sc0007111.1_g000001 Rmu_sc0007111.1_g000012
rosa_roxburghii	Rroxscaffold_4G00295300 Rroxscaffold_4G00295320
rosa_rugosa	Rorug01G0287200
rosa_samantha	Rh1AG298000 Rh1BG262000 Rh1CG279400 Rh1DG291900
rosa_wichuraiana	Rw1G026340 Rw1G026350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	750
Acc16I	TGCGCA	1 cut(s)	170
AccB7I	CCANNNNNTGG	1 cut(s)	918
AclWI	GGATC	1 cut(s)	37
AcoI	YGGCCR	5 cut(s)	568, 574, 592, 598, 817
AcuI	CTGAAG	1 cut(s)	1194
AdeI	CACNNNGTG	1 cut(s)	110
AfaI	GTAC	5 cut(s)	192, 537, 923, 1023, 1229
AfiI	CCNNNNNNNGG	2 cut(s)	809, 918
AgsI	TTSAA	4 cut(s)	218, 236, 884, 997
AjnI	CCWGG	1 cut(s)	58
AjuI	GAANNNNNNNTTGG	2 cut(s)	1061, 1093
AleI	CACNNNNGTG	1 cut(s)	759
AluBI	AGCT	5 cut(s)	161, 175, 246, 854, 1111
AluI	AGCT	5 cut(s)	161, 175, 246, 854, 1111
Alw21I	GWGCWC	2 cut(s)	693, 1037
Alw26I	GTCTC	1 cut(s)	62
AlwI	GGATC	1 cut(s)	37
AoxI	GGCC	7 cut(s)	544, 568, 574, 592, 598, 817, 909
ApeKI	GCWGC	6 cut(s)	161, 266, 290, 323, 500, 1111
AseI	ATTAAT	1 cut(s)	456
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	2 cut(s)	128, 909
AsuHPI	GGTGA	2 cut(s)	74, 650
AvaII	GGWCC	1 cut(s)	128
BalI	TGGCCA	5 cut(s)	570, 576, 594, 600, 819
Bbv12I	GWGCWC	2 cut(s)	693, 1037
BbvI	GCAGC	6 cut(s)	148, 278, 302, 310, 487, 1098
BccI	CCATC	6 cut(s)	308, 669, 702, 920, 1021, 1078
BceAI	ACGGC	1 cut(s)	373
BciT130I	CCWGG	1 cut(s)	60
BclI	TGATCA	6 cut(s)	550, 562, 586, 613, 619, 700
BcoDI	GTCTC	1 cut(s)	62
BfaI	CTAG	1 cut(s)	512
BisI	GCNGC	6 cut(s)	162, 267, 291, 324, 501, 1112
BlpI	GCTNAGC	1 cut(s)	247
BlsI	GCNGC	6 cut(s)	163, 268, 292, 325, 502, 1113
Bme1390I	CCNGG	1 cut(s)	60
Bme18I	GGWCC	1 cut(s)	128
BmgT120I	GGNCC	2 cut(s)	128, 909
BmiI	GGNNCC	1 cut(s)	910
BmrFI	CCNGG	1 cut(s)	60
BmsI	GCATC	3 cut(s)	43, 253, 1042
BplI	GAGNNNNNCTC	2 cut(s)	662, 694
Bpu1102I	GCTNAGC	1 cut(s)	247
BpuEI	CTTGAG	1 cut(s)	1085
BsaBI	GATNNNNATC	1 cut(s)	618
BsaJI	CCNNGG	6 cut(s)	46, 571, 577, 595, 601, 631
Bsc4I	CCNNNNNNNGG	2 cut(s)	809, 918
Bse8I	GATNNNNATC	1 cut(s)	618
BseBI	CCWGG	1 cut(s)	60
BseDI	CCNNGG	6 cut(s)	46, 571, 577, 595, 601, 631
BseGI	GGATG	1 cut(s)	127
BseJI	GATNNNNATC	1 cut(s)	618
BseLI	CCNNNNNNNGG	2 cut(s)	809, 918
BseXI	GCAGC	6 cut(s)	148, 278, 302, 310, 487, 1098
BseYI	CCCAGC	2 cut(s)	330, 419
BsgI	GTGCAG	1 cut(s)	866
BshFI	GGCC	7 cut(s)	546, 570, 576, 594, 600, 819, 911
BsiHKAI	GWGCWC	2 cut(s)	693, 1037
BsiSI	CCGG	1 cut(s)	929
BslFI	GGGAC	2 cut(s)	887, 1000
BslI	CCNNNNNNNGG	2 cut(s)	809, 918
BsmAI	GTCTC	1 cut(s)	62
BsmBI	CGTCTC	1 cut(s)	62
BsmFI	GGGAC	2 cut(s)	887, 1000
BsnI	GGCC	7 cut(s)	546, 570, 576, 594, 600, 819, 911
Bsp1286I	GDGCHC	2 cut(s)	693, 1037
Bsp143I	GATC	8 cut(s)	42, 155, 550, 562, 586, 613, 619, 700
Bsp1720I	GCTNAGC	1 cut(s)	247
Bsp19I	CCATGG	6 cut(s)	46, 571, 577, 595, 601, 631
BspANI	GGCC	7 cut(s)	546, 570, 576, 594, 600, 819, 911
BspHI	TCATGA	7 cut(s)	559, 583, 616, 697, 703, 739, 781
BspLI	GGNNCC	1 cut(s)	910
BspPI	GGATC	1 cut(s)	37
BssECI	CCNNGG	6 cut(s)	46, 571, 577, 595, 601, 631
BssMI	GATC	8 cut(s)	42, 155, 550, 562, 586, 613, 619, 700
BssT1I	CCWWGG	6 cut(s)	46, 571, 577, 595, 601, 631
Bst2UI	CCWGG	1 cut(s)	60
Bst4CI	ACNGT	5 cut(s)	108, 117, 540, 737, 1132
Bst6I	CTCTTC	2 cut(s)	60, 209
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstC8I	GCNNGC	5 cut(s)	173, 328, 417, 1149, 1153
BstDEI	CTNAG	1 cut(s)	247
BstDSI	CCRYGG	6 cut(s)	46, 571, 577, 595, 601, 631
BstF5I	GGATG	1 cut(s)	127
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	8 cut(s)	45, 158, 553, 565, 589, 616, 622, 703
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	8 cut(s)	42, 155, 550, 562, 586, 613, 619, 700
BstMWI	GCNNNNNNNGC	1 cut(s)	296
BstNI	CCWGG	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	58
BstV1I	GCAGC	6 cut(s)	148, 278, 302, 310, 487, 1098
BstX2I	RGATCY	1 cut(s)	42
BstXI	CCANNNNNNTGG	3 cut(s)	554, 578, 602
BstYI	RGATCY	1 cut(s)	42
BsuRI	GGCC	7 cut(s)	546, 570, 576, 594, 600, 819, 911
BtgI	CCRYGG	6 cut(s)	46, 571, 577, 595, 601, 631
BtgZI	GCGATG	1 cut(s)	647
BtsCI	GGATG	1 cut(s)	127
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	192
Cac8I	GCNNGC	5 cut(s)	173, 328, 417, 1149, 1153
CciI	TCATGA	7 cut(s)	559, 583, 616, 697, 703, 739, 781
CfoI	GCGC	1 cut(s)	171
Cfr13I	GGNCC	2 cut(s)	128, 909
Csp6I	GTAC	5 cut(s)	191, 536, 922, 1022, 1228
CviQI	GTAC	5 cut(s)	191, 536, 922, 1022, 1228
DdeI	CTNAG	1 cut(s)	247
DpnI	GATC	8 cut(s)	44, 157, 552, 564, 588, 615, 621, 702
DpnII	GATC	8 cut(s)	42, 155, 550, 562, 586, 613, 619, 700
DraIII	CACNNNGTG	1 cut(s)	110
EaeI	YGGCCR	5 cut(s)	568, 574, 592, 598, 817
Eam1104I	CTCTTC	2 cut(s)	60, 209
EarI	CTCTTC	2 cut(s)	60, 209
Eco130I	CCWWGG	6 cut(s)	46, 571, 577, 595, 601, 631
Eco47I	GGWCC	1 cut(s)	128
Eco57I	CTGAAG	1 cut(s)	1194
EcoRII	CCWGG	1 cut(s)	58
EcoT14I	CCWWGG	6 cut(s)	46, 571, 577, 595, 601, 631
ErhI	CCWWGG	6 cut(s)	46, 571, 577, 595, 601, 631
Esp3I	CGTCTC	1 cut(s)	62
FaqI	GGGAC	2 cut(s)	887, 1000
FauNDI	CATATG	2 cut(s)	407, 917
FbaI	TGATCA	6 cut(s)	550, 562, 586, 613, 619, 700
Fnu4HI	GCNGC	6 cut(s)	162, 267, 291, 324, 501, 1112
FokI	GGATG	1 cut(s)	134
Fsp4HI	GCNGC	6 cut(s)	162, 267, 291, 324, 501, 1112
FspBI	CTAG	1 cut(s)	512
FspI	TGCGCA	1 cut(s)	170
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	6 cut(s)	162, 267, 291, 324, 501, 1112
GsaI	CCCAGC	2 cut(s)	334, 423
HaeIII	GGCC	7 cut(s)	546, 570, 576, 594, 600, 819, 911
HapII	CCGG	1 cut(s)	929
HhaI	GCGC	1 cut(s)	171
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HinfI	GANTC	3 cut(s)	8, 143, 376
HpaII	CCGG	1 cut(s)	929
HphI	GGTGA	2 cut(s)	74, 650
Hpy166II	GTNNAC	1 cut(s)	113
Hpy188I	TCNGA	7 cut(s)	13, 121, 283, 469, 486, 1169, 1220
Hpy8I	GTNNAC	1 cut(s)	113
HpyAV	CCTTC	4 cut(s)	764, 869, 1063, 1215
HpyCH4III	ACNGT	5 cut(s)	108, 117, 540, 737, 1132
HpyCH4IV	ACGT	1 cut(s)	843
HpyCH4V	TGCA	8 cut(s)	266, 290, 503, 847, 957, 1055, 1114, 1184
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
HpyF3I	CTNAG	1 cut(s)	247
HpySE526I	ACGT	1 cut(s)	843
HspAI	GCGC	1 cut(s)	169
Ksp22I	TGATCA	6 cut(s)	550, 562, 586, 613, 619, 700
Kzo9I	GATC	8 cut(s)	42, 155, 550, 562, 586, 613, 619, 700
LmnI	GCTCC	2 cut(s)	61, 851
Lsp1109I	GCAGC	6 cut(s)	148, 278, 302, 310, 487, 1098
LweI	GCATC	3 cut(s)	43, 253, 1042
MaeI	CTAG	1 cut(s)	512
MaeII	ACGT	1 cut(s)	843
MaeIII	GTNAC	1 cut(s)	1243
MalI	GATC	8 cut(s)	44, 157, 552, 564, 588, 615, 621, 702
MboI	GATC	8 cut(s)	42, 155, 550, 562, 586, 613, 619, 700
MboII	GAAGA	6 cut(s)	77, 196, 719, 835, 949, 1100
MflI	RGATCY	1 cut(s)	42
MhlI	GDGCHC	2 cut(s)	693, 1037
MlsI	TGGCCA	5 cut(s)	570, 576, 594, 600, 819
MluNI	TGGCCA	5 cut(s)	570, 576, 594, 600, 819
MmeI	TCCRAC	4 cut(s)	99, 106, 424, 1059
MnlI	CCTC	2 cut(s)	664, 999
Mox20I	TGGCCA	5 cut(s)	570, 576, 594, 600, 819
MscI	TGGCCA	5 cut(s)	570, 576, 594, 600, 819
MseI	TTAA	3 cut(s)	456, 519, 1264
Msp20I	TGGCCA	5 cut(s)	570, 576, 594, 600, 819
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	1 cut(s)	929
MspR9I	CCNGG	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	60
MwoI	GCNNNNNNNGC	1 cut(s)	296
NcoI	CCATGG	6 cut(s)	46, 571, 577, 595, 601, 631
NdeI	CATATG	2 cut(s)	407, 917
NdeII	GATC	8 cut(s)	42, 155, 550, 562, 586, 613, 619, 700
NlaIV	GGNNCC	1 cut(s)	910
NmuCI	GTSAC	1 cut(s)	1243
NsbI	TGCGCA	1 cut(s)	170
OliI	CACNNNNGTG	1 cut(s)	759
PagI	TCATGA	7 cut(s)	559, 583, 616, 697, 703, 739, 781
PfeI	GAWTC	3 cut(s)	8, 143, 376
PflMI	CCANNNNNTGG	1 cut(s)	918
PkrI	GCNGC	6 cut(s)	163, 268, 292, 325, 502, 1113
PshBI	ATTAAT	1 cut(s)	456
PsiI	TTATAA	1 cut(s)	750
Psp6I	CCWGG	1 cut(s)	58
PspFI	CCCAGC	2 cut(s)	330, 419
PspGI	CCWGG	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	910
PspPI	GGNCC	2 cut(s)	128, 909
PsrI	GAACNNNNNNTAC	2 cut(s)	183, 215
PsuI	RGATCY	1 cut(s)	42
PvuII	CAGCTG	1 cut(s)	161
RsaI	GTAC	5 cut(s)	192, 537, 923, 1023, 1229
RsaNI	GTAC	5 cut(s)	191, 536, 922, 1022, 1228
SaqAI	TTAA	3 cut(s)	456, 519, 1264
SatI	GCNGC	6 cut(s)	162, 267, 291, 324, 501, 1112
Sau3AI	GATC	8 cut(s)	42, 155, 550, 562, 586, 613, 619, 700
Sau96I	GGNCC	2 cut(s)	128, 909
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	2 cut(s)	693, 1037
SetI	ASST	9 cut(s)	163, 177, 248, 775, 846, 856, 861, 1113, 1174
SfaNI	GCATC	3 cut(s)	43, 253, 1042
SinI	GGWCC	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	1064
SmoI	CTYRAG	1 cut(s)	1064
SspI	AATATT	3 cut(s)	255, 523, 966
SspMI	CTAG	1 cut(s)	512
StyD4I	CCNGG	1 cut(s)	58
StyI	CCWWGG	6 cut(s)	46, 571, 577, 595, 601, 631
TaaI	ACNGT	5 cut(s)	108, 117, 540, 737, 1132
TaiI	ACGT	1 cut(s)	846
TaqI	TCGA	2 cut(s)	680, 1017
TatI	WGTACW	3 cut(s)	535, 1021, 1227
TfiI	GAWTC	3 cut(s)	8, 143, 376
Tru1I	TTAA	3 cut(s)	456, 519, 1264
Tru9I	TTAA	3 cut(s)	456, 519, 1264
TscAI	CASTG	1 cut(s)	192
TseFI	GTSAC	1 cut(s)	1243
TseI	GCWGC	6 cut(s)	161, 266, 290, 323, 500, 1111
Tsp45I	GTSAC	1 cut(s)	1243
TspDTI	ATGAA	6 cut(s)	196, 450, 720, 738, 783, 851
TspGWI	ACGGA	1 cut(s)	847
TspRI	CASTG	1 cut(s)	192
Van91I	CCANNNNNTGG	1 cut(s)	918
VpaK11BI	GGWCC	1 cut(s)	128
VspI	ATTAAT	1 cut(s)	456
XspI	CTAG	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.