Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004474

Physical Location & Seq

Genomic Coordinates Reverse (-)

56108754 .. 56111152

Gene Structure 2399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCTCAATCAGTTACCGGAATTCAGGTCGAAGCGACCACGTTTCCTCCCGCCGTCAAGCCTCCGGGCTCCGCCAACACTCTGTTCCTCGCCGGCGCAGGGGCGAGGGGGCTGGAGATACAGGGGAATTTCGTTAAGTTCACGGCGATTGGAGTCTACTTGGAGGATAAGGCCGTGCCGGCGCTCGCCGTTAAGTGGAAGGGTAAGACGGCCGAGGAGTTGACGGAGTCCGTTGAATTCTTCAGGGAGATCGTTACAGGTCCATTTGAGAAATTCACACAGGTGACGATGATACTGCCATTGACTGGCCAGCAATACTCGGAGAAGGTTTCAGAGAATTGTGTTGCCATTTGGAAAAAATTTGGAATTTATACTGATGCAGAAGCCAAAGCCATTGAAAAGTTTGTGGAGGTCTTCAAAGATCAGACCTTCCCACCTGGTGCTTCTATTCTCTTCACACAATCACCAAATGGATCATTGACGATTGGCTTCTCCAAAGATGGTTCCATACCAGCAGTTGGAAATGCGGTGATTGAAAACAAGCTACTTTCAGAGTCAGTTCTCGAGTCAATCATTGGAAAGCAAGGAGTTTCTCCTGAAGCAAGGAAATGTGTGGCTACAAGGCTATCAGAATTGTTGAAAGAGAGTGATGATTGCGTGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009812 GO:0009813 GO:0012505 GO:0016853 GO:0016872 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045430 GO:0050896 GO:0071704 GO:0080167 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Chalcone

Protein Analysis

221

Amino Acids

23.7

Weight (kDa)

5.12

Isoelectric Point (pI)

34.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chalcone	PF02431	10 - 212	2.2e-105	Chalcone-flavanone isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55120
fragaria_vesca	FvH4_7g20870
malus_domestica	MD01G1117800.v1.1 MD01G1118000.v1.1 MD01G1118100.v1.1 MD01G1118300.v1.1 MD07G1186300.v1.1 MD07G1186400.v1.1
prunus_persica	Prupe.2G225200_v2.0.a1
pyrus_communis	pycom01g14550 pycom07g17740 pycom07g17750 pycom07g17760 pycom07g17770
rosa_chinensis	RchiOBHm_Chr1g0365111 RchiOBHm_Chr7g0221421 RchiOBHm_Chr7g0221431
rosa_laevigata	RLG00000027441
rosa_multiflora	Rmu_co8490591.1_g000001 Rmu_sc0001688.1_g000009 Rmu_sc0024062.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291420 Rroxscaffold_4G00291930
rosa_rugosa	Rorug01G0319900
rosa_samantha	Rh1AG328600 Rh1BG290200 Rh1CG306900 Rh1DG321800 Rh7AG342300 Rh7CG359900
rosa_wichuraiana	Rw1G029160 Rw7G029060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	305, 518
AccI	GTMKAC	1 cut(s)	156
AciI	CCGC	3 cut(s)	51, 72, 527
AclWI	GGATC	1 cut(s)	481
AcoI	YGGCCR	2 cut(s)	210, 307
AcsI	RAATTY	6 cut(s)	21, 127, 236, 272, 359, 366
AcuI	CTGAAG	2 cut(s)	226, 618
AdeI	CACNNNGTG	1 cut(s)	440
AfiI	CCNNNNNNNGG	4 cut(s)	99, 195, 305, 518
AgsI	TTSAA	5 cut(s)	236, 398, 418, 536, 640
AjnI	CCWGG	1 cut(s)	436
AjuI	GAANNNNNNNTTGG	2 cut(s)	68, 100
AleI	CACNNNNGTG	1 cut(s)	281
AluBI	AGCT	1 cut(s)	544
AluI	AGCT	1 cut(s)	544
AlwI	GGATC	1 cut(s)	481
Ama87I	CYCGRG	1 cut(s)	563
AoxI	GGCC	4 cut(s)	171, 210, 307, 660
ApoI	RAATTY	6 cut(s)	21, 127, 236, 272, 359, 366
AspLEI	GCGC	2 cut(s)	98, 184
AspS9I	GGNCC	1 cut(s)	260
AsuC2I	CCSGG	1 cut(s)	66
AsuHPI	GGTGA	3 cut(s)	295, 456, 541
AvaI	CYCGRG	1 cut(s)	563
AvaII	GGWCC	1 cut(s)	260
BalI	TGGCCA	1 cut(s)	309
BanII	GRGCYC	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	406
BccI	CCATC	1 cut(s)	494
BceAI	ACGGC	5 cut(s)	38, 158, 159, 173, 225
BcgI	CGANNNNNNTGC	2 cut(s)	277, 311
BciT130I	CCWGG	1 cut(s)	438
BcnI	CCSGG	1 cut(s)	66
BfoI	RGCGCY	1 cut(s)	185
BglI	GCCNNNNNGGC	1 cut(s)	179
Bme1390I	CCNGG	2 cut(s)	66, 438
Bme18I	GGWCC	1 cut(s)	260
BmeT110I	CYCGRG	1 cut(s)	563
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	2 cut(s)	70, 505
BmrFI	CCNGG	2 cut(s)	66, 438
BmsI	GCATC	1 cut(s)	367
BpiI	GAAGAC	1 cut(s)	406
BpmI	CTGGAG	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	213
BsaWI	WCCGGW	1 cut(s)	17
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bsc4I	CCNNNNNNNGG	4 cut(s)	99, 195, 305, 518
Bse118I	RCCGGY	2 cut(s)	92, 178
Bse1I	ACTGG	1 cut(s)	310
BseBI	CCWGG	1 cut(s)	438
BseDI	CCNNGG	1 cut(s)	213
BseLI	CCNNNNNNNGG	4 cut(s)	99, 195, 305, 518
BseNI	ACTGG	1 cut(s)	310
BseRI	GAGGAG	1 cut(s)	230
BseX3I	CGGCCG	1 cut(s)	210
Bsh1285I	CGRYCG	1 cut(s)	213
BshFI	GGCC	4 cut(s)	173, 212, 309, 662
BsiEI	CGRYCG	1 cut(s)	213
BsiHKCI	CYCGRG	1 cut(s)	563
BsiSI	CCGG	4 cut(s)	18, 65, 93, 179
BslI	CCNNNNNNNGG	4 cut(s)	99, 195, 305, 518
BsnI	GGCC	4 cut(s)	173, 212, 309, 662
BsoBI	CYCGRG	1 cut(s)	563
Bsp1286I	GDGCHC	1 cut(s)	71
Bsp143I	GATC	3 cut(s)	249, 421, 473
BspACI	CCGC	3 cut(s)	51, 72, 527
BspANI	GGCC	4 cut(s)	173, 212, 309, 662
BspLI	GGNNCC	2 cut(s)	70, 505
BspPI	GGATC	1 cut(s)	481
BsrFI	RCCGGY	2 cut(s)	92, 178
BsrI	ACTGG	1 cut(s)	310
BssAI	RCCGGY	2 cut(s)	92, 178
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	3 cut(s)	249, 421, 473
Bst2UI	CCWGG	1 cut(s)	438
Bst6I	CTCTTC	1 cut(s)	458
BstC8I	GCNNGC	4 cut(s)	94, 180, 186, 311
BstH2I	RGCGCY	1 cut(s)	185
BstHHI	GCGC	2 cut(s)	98, 184
BstKTI	GATC	3 cut(s)	252, 424, 476
BstMBI	GATC	3 cut(s)	249, 421, 473
BstMCI	CGRYCG	1 cut(s)	213
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstNI	CCWGG	1 cut(s)	438
BstSCI	CCNGG	2 cut(s)	64, 436
BstV2I	GAAGAC	1 cut(s)	406
BstZI	CGGCCG	1 cut(s)	210
BsuRI	GGCC	4 cut(s)	173, 212, 309, 662
Cac8I	GCNNGC	4 cut(s)	94, 180, 186, 311
CfoI	GCGC	2 cut(s)	98, 184
Cfr10I	RCCGGY	2 cut(s)	92, 178
Cfr13I	GGNCC	1 cut(s)	260
CsiI	ACCWGGT	1 cut(s)	436
DpnI	GATC	3 cut(s)	251, 423, 475
DpnII	GATC	3 cut(s)	249, 421, 473
DraIII	CACNNNGTG	1 cut(s)	440
EaeI	YGGCCR	2 cut(s)	210, 307
EagI	CGGCCG	1 cut(s)	210
Eam1104I	CTCTTC	1 cut(s)	458
EarI	CTCTTC	1 cut(s)	458
EciI	GGCGGA	1 cut(s)	61
EclXI	CGGCCG	1 cut(s)	210
Eco24I	GRGCYC	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	260
Eco52I	CGGCCG	1 cut(s)	210
Eco57I	CTGAAG	2 cut(s)	226, 618
Eco88I	CYCGRG	1 cut(s)	563
EcoRI	GAATTC	2 cut(s)	21, 236
EcoRII	CCWGG	1 cut(s)	436
EcoT38I	GRGCYC	1 cut(s)	71
FaiI	YATR	2 cut(s)	372, 509
FauI	CCCGC	1 cut(s)	58
FblI	GTMKAC	1 cut(s)	156
FriOI	GRGCYC	1 cut(s)	71
GlaI	GCGC	2 cut(s)	97, 183
GsuI	CTGGAG	1 cut(s)	134
HaeII	RGCGCY	1 cut(s)	185
HaeIII	GGCC	4 cut(s)	173, 212, 309, 662
HapII	CCGG	4 cut(s)	18, 65, 93, 179
HhaI	GCGC	2 cut(s)	98, 184
Hin6I	GCGC	2 cut(s)	96, 182
HinP1I	GCGC	2 cut(s)	96, 182
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HinfI	GANTC	4 cut(s)	153, 227, 554, 566
HpaII	CCGG	4 cut(s)	18, 65, 93, 179
HphI	GGTGA	3 cut(s)	295, 456, 541
Hpy166II	GTNNAC	3 cut(s)	141, 157, 222
Hpy188I	TCNGA	5 cut(s)	322, 334, 426, 553, 631
Hpy188III	TCNNGA	2 cut(s)	563, 596
Hpy8I	GTNNAC	3 cut(s)	141, 157, 222
HpyAV	CCTTC	3 cut(s)	193, 319, 439
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	1 cut(s)	380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpySE526I	ACGT	1 cut(s)	41
HspAI	GCGC	2 cut(s)	96, 182
KroI	GCCGGC	2 cut(s)	92, 178
KroNI	GCCGGC	2 cut(s)	94, 180
Kzo9I	GATC	3 cut(s)	249, 421, 473
LmnI	GCTCC	1 cut(s)	74
LweI	GCATC	1 cut(s)	367
MabI	ACCWGGT	1 cut(s)	436
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	3 cut(s)	13, 253, 283
MalI	GATC	3 cut(s)	251, 423, 475
MboI	GATC	3 cut(s)	249, 421, 473
MboII	GAAGA	3 cut(s)	232, 406, 445
MhlI	GDGCHC	1 cut(s)	71
MlsI	TGGCCA	1 cut(s)	309
MluCI	AATT	8 cut(s)	21, 127, 236, 272, 337, 359, 366, 632
MluNI	TGGCCA	1 cut(s)	309
MlyI	GAGTC	4 cut(s)	162, 236, 563, 575
MmeI	TCCRAC	1 cut(s)	499
MnlI	CCTC	7 cut(s)	57, 72, 98, 99, 157, 208, 403
Mox20I	TGGCCA	1 cut(s)	309
MreI	CGCCGGCG	1 cut(s)	92
MroNI	GCCGGC	2 cut(s)	92, 178
MscI	TGGCCA	1 cut(s)	309
MseI	TTAA	2 cut(s)	135, 192
MslI	CAYNNNNRTG	1 cut(s)	281
Msp20I	TGGCCA	1 cut(s)	309
MspI	CCGG	4 cut(s)	18, 65, 93, 179
MspR9I	CCNGG	2 cut(s)	66, 438
MvaI	CCWGG	1 cut(s)	438
MwoI	GCNNNNNNNGC	1 cut(s)	179
NaeI	GCCGGC	2 cut(s)	94, 180
NciI	CCSGG	1 cut(s)	66
NdeII	GATC	3 cut(s)	249, 421, 473
NgoMIV	GCCGGC	2 cut(s)	92, 178
NlaIV	GGNNCC	2 cut(s)	70, 505
NmeAIII	GCCGAG	1 cut(s)	238
NmuCI	GTSAC	1 cut(s)	283
OliI	CACNNNNGTG	1 cut(s)	281
PaeR7I	CTCGAG	1 cut(s)	563
PdiI	GCCGGC	2 cut(s)	94, 180
PflFI	GACNNNGTC	1 cut(s)	226
PflMI	CCANNNNNTGG	2 cut(s)	305, 518
PleI	GAGTC	4 cut(s)	161, 235, 562, 574
PpsI	GAGTC	4 cut(s)	161, 235, 562, 574
Psp6I	CCWGG	1 cut(s)	436
PspGI	CCWGG	1 cut(s)	436
PspN4I	GGNNCC	2 cut(s)	70, 505
PspPI	GGNCC	1 cut(s)	260
PsyI	GACNNNGTC	1 cut(s)	226
RseI	CAYNNNNRTG	1 cut(s)	281
SaqAI	TTAA	2 cut(s)	135, 192
Sau3AI	GATC	3 cut(s)	249, 421, 473
Sau96I	GGNCC	1 cut(s)	260
SchI	GAGTC	4 cut(s)	162, 236, 563, 575
ScrFI	CCNGG	2 cut(s)	66, 438
SduI	GDGCHC	1 cut(s)	71
SetI	ASST	9 cut(s)	30, 44, 262, 285, 330, 414, 431, 439, 546
SexAI	ACCWGGT	1 cut(s)	436
SfaNI	GCATC	1 cut(s)	367
Sfr274I	CTCGAG	1 cut(s)	563
SgrAI	CRCCGGYG	1 cut(s)	92
SinI	GGWCC	1 cut(s)	260
SlaI	CTCGAG	1 cut(s)	563
SmiMI	CAYNNNNRTG	1 cut(s)	281
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
Sse9I	AATT	8 cut(s)	21, 127, 236, 272, 337, 359, 366, 632
SsiI	CCGC	3 cut(s)	51, 72, 527
StyD4I	CCNGG	2 cut(s)	64, 436
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	2 cut(s)	30, 564
TasI	AATT	8 cut(s)	21, 127, 236, 272, 337, 359, 366, 632
Tru1I	TTAA	2 cut(s)	135, 192
Tru9I	TTAA	2 cut(s)	135, 192
TseFI	GTSAC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	283
TspGWI	ACGGA	2 cut(s)	220, 239
Tth111I	GACNNNGTC	1 cut(s)	226
Van91I	CCANNNNNTGG	2 cut(s)	305, 518
VpaK11BI	GGWCC	1 cut(s)	260
XapI	RAATTY	6 cut(s)	21, 127, 236, 272, 359, 366
XhoI	CTCGAG	1 cut(s)	563
XmiI	GTMKAC	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.