Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004037

Physical Location & Seq

Genomic Coordinates Reverse (-)

57891595 .. 57891867

Gene Structure 273 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGTCTCCTCTCCATATCAAGAGCGTGGATTGGGACAACCCAGATGGCATAAAATGTGCCAAAGAGACCACTCCAATCCTGAACAGAACGACGCCGTTAGAAGTGGGCACAGACAGAAGGCTCTTTGTGATTTCGAGCGACATAGTGAAAGCAATGAAAGTGCCTGTTTACCTTCTCAATATTACTACTCTATCCGAGTTTCGTAAAGATGCACATACCTCGGTCCATACCATCAGGCAAAGGCAAGATAATGATGCCGGAGCAGCAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010383 GO:0010410 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:0080090 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990538 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

90

Amino Acids

10.05

Weight (kDa)

7.93

Isoelectric Point (pI)

37.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	1 - 83	2.7e-15	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40150 AT2G40160 AT2G40160 AT2G40160 AT3G55990
fragaria_vesca	FvH4_7g24620
malus_domestica	MD01G1154500.v1.1 MD07G1223300.v1.1
prunus_persica	Prupe.2G251900_v2.0.a1
pyrus_communis	pycom01g17170 pycom07g20190 pycom07g20200
rosa_chinensis	RchiOBHm_Chr1g0367551 RchiOBHm_Chr1g0370451
rosa_laevigata	RLG00000004529 RLG00000004557 RLG00000008944 RLG00000027040 RLG00000036183
rosa_multiflora	Rmu_sc0005656.1_g000014
rosa_roxburghii	Rroxscaffold_4G00286550
rosa_rugosa	Rorug01G0356900
rosa_samantha	Rh1BG328300 Rh1CG341400 Rh2CG472100 Rh2CG472200 Rh2DG621700 Rh7DG249300 Rh7DG249400 Rh7DG445600
rosa_wichuraiana	Rw1G010640 Rw1G032200 Rw6G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcyI	GRCGYC	1 cut(s)	92
AluBI	AGCT	1 cut(s)	270
AluI	AGCT	1 cut(s)	270
Alw26I	GTCTC	2 cut(s)	9, 59
ApeKI	GCWGC	1 cut(s)	263
AspS9I	GGNCC	1 cut(s)	223
AvaII	GGWCC	1 cut(s)	223
BaeGI	GKGCMC	1 cut(s)	110
BccI	CCATC	2 cut(s)	38, 239
BceAI	ACGGC	1 cut(s)	79
BcgI	CGANNNNNNTGC	2 cut(s)	201, 235
BcoDI	GTCTC	2 cut(s)	9, 59
BisI	GCNGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	265
Bme18I	GGWCC	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	223
BmsI	GCATC	2 cut(s)	199, 244
BsaHI	GRCGYC	1 cut(s)	92
BsaI	GGTCTC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	219
Bse3DI	GCAATG	1 cut(s)	159
BseDI	CCNNGG	1 cut(s)	219
BseMI	GCAATG	1 cut(s)	159
BseSI	GKGCMC	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	258
BslFI	GGGAC	1 cut(s)	47
BsmAI	GTCTC	2 cut(s)	9, 59
BsmFI	GGGAC	1 cut(s)	47
Bso31I	GGTCTC	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	110
BspTNI	GGTCTC	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	159
BssECI	CCNNGG	1 cut(s)	219
BssNI	GRCGYC	1 cut(s)	92
BstACI	GRCGYC	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	268
BstMAI	GTCTC	2 cut(s)	9, 59
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstSLI	GKGCMC	1 cut(s)	110
Cac8I	GCNNGC	1 cut(s)	268
Cfr13I	GGNCC	1 cut(s)	223
CseI	GACGC	1 cut(s)	100
CviJI	RGCY	2 cut(s)	121, 270
CviKI_1	RGCY	2 cut(s)	121, 270
Eco31I	GGTCTC	1 cut(s)	59
Eco47I	GGWCC	1 cut(s)	223
FaiI	YATR	5 cut(s)	15, 50, 143, 216, 228
FaqI	GGGAC	1 cut(s)	47
Fnu4HI	GCNGC	1 cut(s)	264
Fsp4HI	GCNGC	1 cut(s)	264
GluI	GCNGC	1 cut(s)	264
HapII	CCGG	1 cut(s)	258
HgaI	GACGC	1 cut(s)	100
Hin1I	GRCGYC	1 cut(s)	92
HpaII	CCGG	1 cut(s)	258
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	1 cut(s)	196
Hpy188III	TCNNGA	2 cut(s)	19, 79
Hpy8I	GTNNAC	1 cut(s)	169
Hpy99I	CGWCG	1 cut(s)	94
HpyAV	CCTTC	2 cut(s)	111, 182
HpyCH4V	TGCA	1 cut(s)	212
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
Hsp92I	GRCGYC	1 cut(s)	92
LmnI	GCTCC	1 cut(s)	260
LpnPI	CCDG	4 cut(s)	54, 92, 177, 220
LweI	GCATC	2 cut(s)	199, 244
MhlI	GDGCHC	1 cut(s)	110
MnlI	CCTC	2 cut(s)	18, 229
MspI	CCGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	1 cut(s)	263
PkrI	GCNGC	1 cut(s)	265
PspPI	GGNCC	1 cut(s)	223
SatI	GCNGC	1 cut(s)	264
Sau96I	GGNCC	1 cut(s)	223
SduI	GDGCHC	1 cut(s)	110
SetI	ASST	3 cut(s)	174, 221, 272
SfaNI	GCATC	2 cut(s)	199, 244
SinI	GGWCC	1 cut(s)	223
SspI	AATATT	1 cut(s)	181
TaqI	TCGA	1 cut(s)	134
TaqII	GACCGA	1 cut(s)	211
TseI	GCWGC	1 cut(s)	263
TspDTI	ATGAA	1 cut(s)	170
VpaK11BI	GGWCC	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.