RchiOBHm_Chr1g0368311

Poly(A) RNA polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001926
Physical Location & Seq
Forward (+)
58489182 .. 58493069
3888 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1383 bp
ATGAATACACTTGTTATGTTGGATAATACTCTCAATCAGATTCTACGAGTTCTTAAACCCTCACTGGAAGATTGGGAAACACGACTGAGAATCCTTCATGAGTTACAAGGAGCTGTTGAATCTGTGGAGGGTTTAAGAGGTGCAACTGTGGAGCCATTTGGATCATTTGTGTCTAATCTGTATGCTTGCTGGGGAGACTTGGATATTTCAATTGAGTTTTCCAAAGGCTCATATATTTCAGAGTATGGGAAAAAGCACAAAGAACAATTACTAGGAGTTGTGATGAGAGCTATGAGACAGAGAGGTGGATGGAAAAGTTTTAAATTTATACCCACTGCAAGAGTTCCCATATTAAAGGTCGAAAGTTATCTCCAAAACATCTCTTGCGATATATCAATCAATAATCTGAAGGGACAAATGAAATCCAAACTCTTGTTTTGTATTGGTGAGATTGATGGGCGCTTCCGAGATATGGTTTTACTGGTAAAGGAATGGGCAAAAGCACAAAATATGAATAATCCAAGACTCGGGTCTTTCAACTCGTACGCCCTCACTTTGCTTGTGGTCTTCCACTTTCAGACATGTACACCTGCAATTTTGCCACCTCTTAAAGATATATATCCAGGGAATCTCACGGATGATCTTCAAGGCTTGAGGGCTGATGCAGAAAAACGTATTGAAGAAACATGTGTTGATAACGTAACAAGGTTTAAATCAGACAAATGTGGAGCAGAAAACAGAAGTTCATTGTCACAGCTTTTCATTTCATTCCTTGAGAAGTTTTCGGACCTTTTTCTGAAAACAAGAAAGTTGGGAATTTGCCCATATACCGGACAGTGGGAAGACATACCAAGCAATATGACATGGTTGCCCCAAACATATACCATAATGATTCAAGATCCCTTTGATCAGCCAGAAAACTCTTCAAGGGCTGTTAGCATGGGAGAATTGACAAGGATATCTGAAGCTTTTAAGATGAGCAGGGACATACTCATGTCAGCTAATCAGAGTGACATTCTTGCCACACTAGTCCGACCCCTAACCTACCGTCTTGTGACAGGAACATCTCACTACCAGTTTGAGCAACGTCATGGAGCTTATCCACAACGTTTCATGACTGAGAGCCCACATTCAAGAACACCAAGGGGGAATTATGTTCCCAGGCAACCACGTCGTCCTCAGGTGCATAAGTGGGCACAGAAACCCTCACAAGTCCAGTCTCAATTTCAGAAGATGACGCCAGAAAACCATCCTGTCAAGCCCACTTTTCAAGAGATGAAGCCAGAAAACCATCCCAACAGGTCCACCCCTGATATCCCAACTCTAGAGACATCTCGGGATTGTGCATGCGGAATGTGTATGCCTGGGGAGTACATTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NTP_transf_2

Protein Analysis

460

Amino Acids

52.68

Weight (kDa)

8.78

Isoelectric Point (pI)

47.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MTPAP-like_central PF22600 7 - 148 5.3e-22 Poly(A) RNA polymerase, mitochondrial-like, central palm domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 598
Acc36I ACCTGC 1 cut(s) 598
AciI CCGC 1 cut(s) 1350
AclI AACGTT 1 cut(s) 1108
AclWI GGATC 2 cut(s) 169, 893
AcsI RAATTY 2 cut(s) 323, 816
AcuI CTGAAG 2 cut(s) 428, 984
AcyI GRCGYC 1 cut(s) 1238
AfaI GTAC 3 cut(s) 545, 586, 1373
AfiI CCNNNNNNNGG 4 cut(s) 472, 527, 830, 837
AflIII ACRYGT 2 cut(s) 581, 686
AgsI TTSAA 9 cut(s) 119, 210, 538, 647, 680, 896, 927, 1134, 1271
AhlI ACTAGT 1 cut(s) 1027
AjiI CACGTC 1 cut(s) 1172
AjnI CCWGG 3 cut(s) 622, 1160, 1363
AluBI AGCT 6 cut(s) 113, 290, 757, 968, 1001, 1097
AluI AGCT 6 cut(s) 113, 290, 757, 968, 1001, 1097
Alw26I GTCTC 4 cut(s) 189, 289, 1224, 1322
AlwI GGATC 2 cut(s) 169, 893
Ama87I CYCGRG 2 cut(s) 527, 1335
ApoI RAATTY 2 cut(s) 323, 816
AspLEI GCGC 1 cut(s) 462
AspS9I GGNCC 2 cut(s) 787, 1302
AsuHPI GGTGA 1 cut(s) 458
AvaI CYCGRG 2 cut(s) 527, 1335
AvaII GGWCC 2 cut(s) 787, 1302
AxyI CCTNAGG 1 cut(s) 1179
BaeGI GKGCMC 1 cut(s) 1198
BanII GRGCYC 1 cut(s) 1127
BbsI GAAGAC 2 cut(s) 559, 849
BccI CCATC 4 cut(s) 303, 449, 1257, 1299
BcgI CGANNNNNNTGC 2 cut(s) 1154, 1188
BciT130I CCWGG 3 cut(s) 624, 1162, 1365
BclI TGATCA 1 cut(s) 907
BcoDI GTCTC 4 cut(s) 189, 289, 1224, 1322
BcuI ACTAGT 1 cut(s) 1027
BfaI CTAG 3 cut(s) 272, 1028, 1325
BfoI RGCGCY 1 cut(s) 463
BfuAI ACCTGC 1 cut(s) 598
Bme1390I CCNGG 3 cut(s) 624, 1162, 1365
Bme18I GGWCC 2 cut(s) 787, 1302
BmeT110I CYCGRG 2 cut(s) 527, 1335
BmgBI CACGTC 1 cut(s) 1172
BmgT120I GGNCC 2 cut(s) 787, 1302
BmiI GGNNCC 1 cut(s) 153
BmrFI CCNGG 3 cut(s) 624, 1162, 1365
BmsI GCATC 1 cut(s) 652
BoxI GACNNNNGTC 1 cut(s) 529
BpiI GAAGAC 2 cut(s) 559, 849
BpuEI CTTGAG 2 cut(s) 673, 794
BsaBI GATNNNNATC 1 cut(s) 618
BsaHI GRCGYC 1 cut(s) 1238
BsaJI CCNNGG 4 cut(s) 623, 1142, 1160, 1364
BsaWI WCCGGW 1 cut(s) 830
Bsc4I CCNNNNNNNGG 4 cut(s) 472, 527, 830, 837
Bse1I ACTGG 4 cut(s) 69, 486, 1075, 1216
Bse21I CCTNAGG 1 cut(s) 1179
Bse8I GATNNNNATC 1 cut(s) 618
BseBI CCWGG 3 cut(s) 624, 1162, 1365
BseDI CCNNGG 4 cut(s) 623, 1142, 1160, 1364
BseGI GGATG 4 cut(s) 314, 643, 1249, 1291
BseJI GATNNNNATC 1 cut(s) 618
BseLI CCNNNNNNNGG 4 cut(s) 472, 527, 830, 837
BseMII CTCAG 3 cut(s) 77, 1110, 1193
BseNI ACTGG 4 cut(s) 69, 486, 1075, 1216
BseSI GKGCMC 1 cut(s) 1198
BseYI CCCAGC 1 cut(s) 189
BsiHKCI CYCGRG 2 cut(s) 527, 1335
BsiSI CCGG 1 cut(s) 831
BsiWI CGTACG 1 cut(s) 543
BslFI GGGAC 2 cut(s) 426, 998
BslI CCNNNNNNNGG 4 cut(s) 472, 527, 830, 837
BsmAI GTCTC 4 cut(s) 189, 289, 1224, 1322
BsmFI GGGAC 2 cut(s) 426, 998
BsoBI CYCGRG 2 cut(s) 527, 1335
Bsp1286I GDGCHC 2 cut(s) 1127, 1198
Bsp1407I TGTACA 1 cut(s) 584
Bsp143I GATC 4 cut(s) 161, 640, 898, 907
BspACI CCGC 1 cut(s) 1350
BspCNI CTCAG 3 cut(s) 78, 1111, 1192
BspHI TCATGA 2 cut(s) 97, 1113
BspLI GGNNCC 1 cut(s) 153
BspMI ACCTGC 1 cut(s) 598
BspPI GGATC 2 cut(s) 169, 893
BsrGI TGTACA 1 cut(s) 584
BsrI ACTGG 4 cut(s) 69, 486, 1075, 1216
BssECI CCNNGG 4 cut(s) 623, 1142, 1160, 1364
BssMI GATC 4 cut(s) 161, 640, 898, 907
BssNI GRCGYC 1 cut(s) 1238
BssT1I CCWWGG 1 cut(s) 1142
Bst2UI CCWGG 3 cut(s) 624, 1162, 1365
Bst4CI ACNGT 3 cut(s) 148, 837, 1049
Bst6I CTCTTC 1 cut(s) 928
BstACI GRCGYC 1 cut(s) 1238
BstAUI TGTACA 1 cut(s) 584
BstC8I GCNNGC 2 cut(s) 187, 1348
BstDEI CTNAG 3 cut(s) 86, 1119, 1179
BstF5I GGATG 4 cut(s) 314, 643, 1249, 1291
BstH2I RGCGCY 1 cut(s) 463
BstHHI GCGC 1 cut(s) 462
BstKTI GATC 4 cut(s) 164, 643, 901, 910
BstMAI GTCTC 4 cut(s) 189, 289, 1224, 1322
BstMBI GATC 4 cut(s) 161, 640, 898, 907
BstNI CCWGG 3 cut(s) 624, 1162, 1365
BstNSI RCATGY 3 cut(s) 585, 690, 1350
BstPAI GACNNNNGTC 1 cut(s) 529
BstSCI CCNGG 3 cut(s) 622, 1160, 1363
BstSLI GKGCMC 1 cut(s) 1198
BstV2I GAAGAC 2 cut(s) 559, 849
BstX2I RGATCY 1 cut(s) 898
BstYI RGATCY 1 cut(s) 898
Bsu36I CCTNAGG 1 cut(s) 1179
BtrI CACGTC 1 cut(s) 1172
BtsCI GGATG 4 cut(s) 314, 643, 1249, 1291
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 3 cut(s) 62, 333, 842
BveI ACCTGC 1 cut(s) 598
Cac8I GCNNGC 2 cut(s) 187, 1348
CciI TCATGA 2 cut(s) 97, 1113
CfoI GCGC 1 cut(s) 462
Cfr13I GGNCC 2 cut(s) 787, 1302
CseI GACGC 1 cut(s) 1246
Csp6I GTAC 3 cut(s) 544, 585, 1372
CviAII CATG 9 cut(s) 98, 582, 687, 864, 940, 994, 1091, 1114, 1347
CviQI GTAC 3 cut(s) 544, 585, 1372
DdeI CTNAG 3 cut(s) 86, 1119, 1179
DpnI GATC 4 cut(s) 163, 642, 900, 909
DpnII GATC 4 cut(s) 161, 640, 898, 907
DraI TTTAAA 2 cut(s) 322, 712
Eam1104I CTCTTC 1 cut(s) 928
EarI CTCTTC 1 cut(s) 928
Eco130I CCWWGG 1 cut(s) 1142
Eco24I GRGCYC 1 cut(s) 1127
Eco32I GATATC 2 cut(s) 960, 1315
Eco47I GGWCC 2 cut(s) 787, 1302
Eco57I CTGAAG 2 cut(s) 428, 984
Eco81I CCTNAGG 1 cut(s) 1179
Eco88I CYCGRG 2 cut(s) 527, 1335
EcoRII CCWGG 3 cut(s) 622, 1160, 1363
EcoRV GATATC 2 cut(s) 960, 1315
EcoT14I CCWWGG 1 cut(s) 1142
EcoT38I GRGCYC 1 cut(s) 1127
ErhI CCWWGG 1 cut(s) 1142
FaeI CATG 9 cut(s) 101, 585, 690, 867, 943, 997, 1094, 1117, 1350
FaqI GGGAC 2 cut(s) 426, 998
FatI CATG 9 cut(s) 97, 581, 686, 863, 939, 993, 1090, 1113, 1346
FbaI TGATCA 1 cut(s) 907
FokI GGATG 4 cut(s) 321, 650, 1236, 1278
FriOI GRGCYC 1 cut(s) 1127
FspBI CTAG 3 cut(s) 272, 1028, 1325
GlaI GCGC 1 cut(s) 461
GsaI CCCAGC 1 cut(s) 193
HaeII RGCGCY 1 cut(s) 463
HapII CCGG 1 cut(s) 831
HgaI GACGC 1 cut(s) 1246
HhaI GCGC 1 cut(s) 462
Hin1I GRCGYC 1 cut(s) 1238
Hin1II CATG 9 cut(s) 101, 585, 690, 867, 943, 997, 1094, 1117, 1350
Hin6I GCGC 1 cut(s) 460
HinP1I GCGC 1 cut(s) 460
HindIII AAGCTT 1 cut(s) 966
HinfI GANTC 6 cut(s) 40, 90, 119, 525, 628, 892
HpaII CCGG 1 cut(s) 831
HphI GGTGA 1 cut(s) 458
Hpy166II GTNNAC 2 cut(s) 587, 1305
Hpy188III TCNNGA 7 cut(s) 98, 896, 1114, 1134, 1271, 1325, 1337
Hpy8I GTNNAC 2 cut(s) 587, 1305
Hpy99I CGWCG 1 cut(s) 1176
HpyAV CCTTC 2 cut(s) 104, 403
HpyCH4III ACNGT 3 cut(s) 148, 837, 1049
HpyCH4IV ACGT 5 cut(s) 673, 699, 1087, 1108, 1171
HpyCH4V TGCA 6 cut(s) 143, 338, 593, 665, 1186, 1346
HpyF3I CTNAG 3 cut(s) 86, 1119, 1179
HpySE526I ACGT 5 cut(s) 673, 699, 1087, 1108, 1171
Hsp92I GRCGYC 1 cut(s) 1238
Hsp92II CATG 9 cut(s) 101, 585, 690, 867, 943, 997, 1094, 1117, 1350
HspAI GCGC 1 cut(s) 460
Ksp22I TGATCA 1 cut(s) 907
Kzo9I GATC 4 cut(s) 161, 640, 898, 907
LmnI GCTCC 4 cut(s) 110, 151, 728, 1094
LweI GCATC 1 cut(s) 652
MaeI CTAG 3 cut(s) 272, 1028, 1325
MaeII ACGT 5 cut(s) 673, 699, 1087, 1108, 1171
MaeIII GTNAC 5 cut(s) 102, 700, 750, 1010, 1054
MalI GATC 4 cut(s) 163, 642, 900, 909
MboI GATC 4 cut(s) 161, 640, 898, 907
MboII GAAGA 7 cut(s) 80, 559, 635, 692, 854, 915, 1243
MfeI CAATTG 1 cut(s) 210
MflI RGATCY 1 cut(s) 898
MhlI GDGCHC 2 cut(s) 1127, 1198
MluCI AATT 8 cut(s) 210, 266, 323, 594, 816, 947, 1150, 1223
MlyI GAGTC 1 cut(s) 519
MmeI TCCRAC 1 cut(s) 1057
MnlI CCTC 9 cut(s) 70, 121, 131, 296, 560, 615, 648, 1188, 1216
MseI TTAA 7 cut(s) 54, 134, 321, 353, 609, 711, 972
MslI CAYNNNNRTG 1 cut(s) 992
MspI CCGG 1 cut(s) 831
MspR9I CCNGG 3 cut(s) 624, 1162, 1365
MunI CAATTG 1 cut(s) 210
MvaI CCWGG 3 cut(s) 624, 1162, 1365
NdeII GATC 4 cut(s) 161, 640, 898, 907
NlaIII CATG 9 cut(s) 101, 585, 690, 867, 943, 997, 1094, 1117, 1350
NlaIV GGNNCC 1 cut(s) 153
NmuCI GTSAC 3 cut(s) 750, 1010, 1054
NspI RCATGY 3 cut(s) 585, 690, 1350
PaeI GCATGC 1 cut(s) 1350
PagI TCATGA 2 cut(s) 97, 1113
PaqCI CACCTGC 1 cut(s) 598
PciI ACATGT 2 cut(s) 581, 686
PfeI GAWTC 5 cut(s) 40, 90, 119, 628, 892
Pfl23II CGTACG 1 cut(s) 543
PleI GAGTC 1 cut(s) 519
PpsI GAGTC 1 cut(s) 519
PscI ACATGT 2 cut(s) 581, 686
PshAI GACNNNNGTC 1 cut(s) 529
Psp1406I AACGTT 1 cut(s) 1108
Psp6I CCWGG 3 cut(s) 622, 1160, 1363
PspFI CCCAGC 1 cut(s) 189
PspGI CCWGG 3 cut(s) 622, 1160, 1363
PspLI CGTACG 1 cut(s) 543
PspN4I GGNNCC 1 cut(s) 153
PspPI GGNCC 2 cut(s) 787, 1302
PsuI RGATCY 1 cut(s) 898
RsaI GTAC 3 cut(s) 545, 586, 1373
RsaNI GTAC 3 cut(s) 544, 585, 1372
RseI CAYNNNNRTG 1 cut(s) 992
SaqAI TTAA 7 cut(s) 54, 134, 321, 353, 609, 711, 972
Sau3AI GATC 4 cut(s) 161, 640, 898, 907
Sau96I GGNCC 2 cut(s) 787, 1302
SchI GAGTC 1 cut(s) 519
ScrFI CCNGG 3 cut(s) 624, 1162, 1365
SduI GDGCHC 2 cut(s) 1127, 1198
SfaNI GCATC 1 cut(s) 652
SinI GGWCC 2 cut(s) 787, 1302
SmiMI CAYNNNNRTG 1 cut(s) 992
SmlI CTYRAG 2 cut(s) 652, 773
SmoI CTYRAG 2 cut(s) 652, 773
SpeI ACTAGT 1 cut(s) 1027
SphI GCATGC 1 cut(s) 1350
Sse9I AATT 8 cut(s) 210, 266, 323, 594, 816, 947, 1150, 1223
SsiI CCGC 1 cut(s) 1350
SspMI CTAG 3 cut(s) 272, 1028, 1325
StyD4I CCNGG 3 cut(s) 622, 1160, 1363
StyI CCWWGG 1 cut(s) 1142
TaaI ACNGT 3 cut(s) 148, 837, 1049
TaiI ACGT 5 cut(s) 676, 702, 1090, 1111, 1174
TaqI TCGA 1 cut(s) 360
TasI AATT 8 cut(s) 210, 266, 323, 594, 816, 947, 1150, 1223
TatI WGTACW 2 cut(s) 584, 1371
TfiI GAWTC 5 cut(s) 40, 90, 119, 628, 892
Tru1I TTAA 7 cut(s) 54, 134, 321, 353, 609, 711, 972
Tru9I TTAA 7 cut(s) 54, 134, 321, 353, 609, 711, 972
TscAI CASTG 3 cut(s) 69, 340, 842
TseFI GTSAC 3 cut(s) 750, 1010, 1054
Tsp45I GTSAC 3 cut(s) 750, 1010, 1054
TspDTI ATGAA 9 cut(s) 17, 86, 434, 527, 735, 751, 756, 1102, 1292
TspGWI ACGGA 1 cut(s) 650
TspRI CASTG 3 cut(s) 69, 340, 842
VpaK11BI GGWCC 2 cut(s) 787, 1302
XapI RAATTY 2 cut(s) 323, 816
XbaI TCTAGA 1 cut(s) 1324
XceI RCATGY 3 cut(s) 585, 690, 1350
XspI CTAG 3 cut(s) 272, 1028, 1325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.