RchiOBHm_Chr1g0383541

Belongs to the eukaryotic ribosomal protein eL13 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001375
Physical Location & Seq
Reverse (-)
67806727 .. 67808985
2259 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 624 bp
ATGGTGAAGCACAATAATGTTATCCCTGGGGAGCACTTCAGGAAGCACTGGCAGAACTATGTCAAGACCTGGTTTAACCAACCAGCAAGGAAGACCAGGAGGAGAAATGCTCGCCAGGCAAAGGCTGTGAAAATCTTTCCCAGGCCTACTGCTGGACCTCTCCGTCCAGTTGTTCGTGGACAGACATTGAAGTATAACATGAAGGTCAGGGCTGGTCGTGGCTTCACTCTGGAAGAGCTGAAGGCTGCTGGAATTCCAAGGAAACTTGCACCAACCATCGGTATCTCGGTTGATCATCGCAGGAAGAACCGTTCTCTTGAGGGGTTTCAAACTAATGTGCTTCGCTTGAAGACATACAAGCAGAAGTTGGTTGTCTTTCCAAGGCGCGCTGGCAAGTTCAAGGCTGGTGATTCTGCAGCAGAGGAGCTAGCAAATGCAACCCAGCTCCAAGGTCCTCTCTTGGCAATTCAACAGGAGAAACCAGTCACTGAGCTTGTGAAGGTCACTGCAGATATGAAGAAAGTCAATGCATATGACAAGCTCCGTATTGAGCGGGTCAATGTCCGTCATGTTGGGGCCAGGGCAAAGAAGGCTGCTGAGGCTGAGAAGGAAGAAAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L13e

Protein Analysis

207

Amino Acids

23.63

Weight (kDa)

11.07

Isoelectric Point (pI)

36.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L13e PF01294 7 - 185 1.5e-77 Ribosomal protein L13e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 162
AccBSI CCGCTC 1 cut(s) 553
AccII CGCG 1 cut(s) 387
AciI CCGC 1 cut(s) 553
AcsI RAATTY 1 cut(s) 252
AcuI CTGAAG 2 cut(s) 22, 260
AfiI CCNNNNNNNGG 3 cut(s) 121, 152, 278
AgsI TTSAA 5 cut(s) 190, 329, 349, 400, 470
AjnI CCWGG 6 cut(s) 25, 68, 95, 114, 140, 578
AloI GAACNNNNNNTCC 2 cut(s) 295, 327
AluBI AGCT 5 cut(s) 238, 427, 445, 493, 541
AluI AGCT 5 cut(s) 238, 427, 445, 493, 541
Alw21I GWGCWC 1 cut(s) 36
AlwNI CAGNNNCTG 1 cut(s) 488
AoxI GGCC 2 cut(s) 143, 576
ApeKI GCWGC 3 cut(s) 245, 416, 593
ApoI RAATTY 1 cut(s) 252
AspLEI GCGC 2 cut(s) 387, 389
AspS9I GGNCC 3 cut(s) 155, 452, 576
AsuHPI GGTGA 2 cut(s) 16, 419
AsuNHI GCTAGC 1 cut(s) 427
AvaII GGWCC 2 cut(s) 155, 452
BbsI GAAGAC 2 cut(s) 98, 356
Bbv12I GWGCWC 1 cut(s) 36
BbvCI CCTCAGC 1 cut(s) 597
BbvI GCAGC 3 cut(s) 232, 428, 580
BccI CCATC 1 cut(s) 284
BciT130I CCWGG 6 cut(s) 27, 70, 97, 116, 142, 580
BclI TGATCA 1 cut(s) 292
BfaI CTAG 1 cut(s) 428
BfmI CTRYAG 2 cut(s) 414, 507
BisI GCNGC 3 cut(s) 246, 417, 594
BlsI GCNGC 3 cut(s) 247, 418, 595
Bme1390I CCNGG 6 cut(s) 27, 70, 97, 116, 142, 580
Bme18I GGWCC 2 cut(s) 155, 452
BmgT120I GGNCC 3 cut(s) 155, 452, 576
BmiI GGNNCC 1 cut(s) 577
BmrFI CCNGG 6 cut(s) 27, 70, 97, 116, 142, 580
BmtI GCTAGC 1 cut(s) 431
BpiI GAAGAC 2 cut(s) 98, 356
BplI GAGNNNNNCTC 2 cut(s) 94, 126
Bpu10I CCTNAGC 1 cut(s) 597
BpuEI CTTGAG 1 cut(s) 338
BsaJI CCNNGG 7 cut(s) 25, 26, 140, 257, 380, 448, 579
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 152, 278
Bse1I ACTGG 3 cut(s) 53, 167, 482
BseBI CCWGG 6 cut(s) 27, 70, 97, 116, 142, 580
BseDI CCNNGG 7 cut(s) 25, 26, 140, 257, 380, 448, 579
BseLI CCNNNNNNNGG 3 cut(s) 121, 152, 278
BseMII CTCAG 3 cut(s) 480, 588, 594
BseNI ACTGG 3 cut(s) 53, 167, 482
BsePI GCGCGC 1 cut(s) 385
BseRI GAGGAG 2 cut(s) 115, 437
BseXI GCAGC 3 cut(s) 232, 428, 580
BseYI CCCAGC 1 cut(s) 441
Bsh1236I CGCG 1 cut(s) 387
BshFI GGCC 2 cut(s) 145, 578
BsiHKAI GWGCWC 1 cut(s) 36
BslI CCNNNNNNNGG 3 cut(s) 121, 152, 278
BsnI GGCC 2 cut(s) 145, 578
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 1 cut(s) 292
BspACI CCGC 1 cut(s) 553
BspANI GGCC 2 cut(s) 145, 578
BspCNI CTCAG 3 cut(s) 481, 589, 595
BspFNI CGCG 1 cut(s) 387
BspLI GGNNCC 1 cut(s) 577
BspMAI CTGCAG 2 cut(s) 418, 511
BspOI GCTAGC 1 cut(s) 431
BspQI GCTCTTC 1 cut(s) 228
BsrBI CCGCTC 1 cut(s) 553
BsrI ACTGG 3 cut(s) 53, 167, 482
BssECI CCNNGG 7 cut(s) 25, 26, 140, 257, 380, 448, 579
BssHII GCGCGC 1 cut(s) 385
BssMI GATC 1 cut(s) 292
BssT1I CCWWGG 3 cut(s) 257, 380, 448
Bst2UI CCWGG 6 cut(s) 27, 70, 97, 116, 142, 580
Bst4CI ACNGT 1 cut(s) 311
Bst6I CTCTTC 1 cut(s) 228
BstC8I GCNNGC 4 cut(s) 112, 387, 391, 429
BstDEI CTNAG 3 cut(s) 489, 597, 603
BstFNI CGCG 1 cut(s) 387
BstHHI GCGC 2 cut(s) 387, 389
BstKTI GATC 1 cut(s) 295
BstMBI GATC 1 cut(s) 292
BstMWI GCNNNNNNNGC 3 cut(s) 116, 590, 599
BstNI CCWGG 6 cut(s) 27, 70, 97, 116, 142, 580
BstSCI CCNGG 6 cut(s) 25, 68, 95, 114, 140, 578
BstSFI CTRYAG 2 cut(s) 414, 507
BstUI CGCG 1 cut(s) 387
BstV1I GCAGC 3 cut(s) 232, 428, 580
BstV2I GAAGAC 2 cut(s) 98, 356
BsuRI GGCC 2 cut(s) 145, 578
BtgZI GCGATG 1 cut(s) 281
BtsI GCAGTG 1 cut(s) 504
BtsIMutI CAGTG 3 cut(s) 46, 486, 504
Cac8I GCNNGC 4 cut(s) 112, 387, 391, 429
CaiI CAGNNNCTG 1 cut(s) 488
CfoI GCGC 2 cut(s) 387, 389
Cfr13I GGNCC 3 cut(s) 155, 452, 576
CsiI ACCWGGT 1 cut(s) 68
CviAII CATG 2 cut(s) 199, 569
DdeI CTNAG 3 cut(s) 489, 597, 603
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
DrdI GACNNNNNNGTC 1 cut(s) 162
DseDI GACNNNNNNGTC 1 cut(s) 162
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Eco130I CCWWGG 3 cut(s) 257, 380, 448
Eco147I AGGCCT 1 cut(s) 145
Eco47I GGWCC 2 cut(s) 155, 452
Eco57I CTGAAG 2 cut(s) 22, 260
EcoO109I RGGNCCY 1 cut(s) 452
EcoRI GAATTC 1 cut(s) 252
EcoRII CCWGG 6 cut(s) 25, 68, 95, 114, 140, 578
EcoT14I CCWWGG 3 cut(s) 257, 380, 448
EcoT22I ATGCAT 1 cut(s) 532
ErhI CCWWGG 3 cut(s) 257, 380, 448
FaeI CATG 2 cut(s) 202, 572
FaiI YATR 8 cut(s) 60, 195, 200, 355, 515, 532, 534, 570
FatI CATG 2 cut(s) 198, 568
FauI CCCGC 1 cut(s) 546
FauNDI CATATG 1 cut(s) 532
FbaI TGATCA 1 cut(s) 292
Fnu4HI GCNGC 3 cut(s) 246, 417, 594
Fsp4HI GCNGC 3 cut(s) 246, 417, 594
FspBI CTAG 1 cut(s) 428
GlaI GCGC 2 cut(s) 386, 388
GluI GCNGC 3 cut(s) 246, 417, 594
GsaI CCCAGC 1 cut(s) 445
HaeIII GGCC 2 cut(s) 145, 578
HhaI GCGC 2 cut(s) 387, 389
Hin1II CATG 2 cut(s) 202, 572
Hin6I GCGC 2 cut(s) 385, 387
HinP1I GCGC 2 cut(s) 385, 387
HinfI GANTC 1 cut(s) 410
HphI GGTGA 2 cut(s) 16, 419
Hpy166II GTNNAC 1 cut(s) 179
Hpy188III TCNNGA 4 cut(s) 40, 64, 230, 317
Hpy8I GTNNAC 1 cut(s) 179
HpyAV CCTTC 5 cut(s) 196, 235, 493, 583, 601
HpyCH4III ACNGT 1 cut(s) 311
HpyCH4V TGCA 5 cut(s) 269, 416, 437, 509, 530
HpyF10VI GCNNNNNNNGC 3 cut(s) 116, 590, 599
HpyF3I CTNAG 3 cut(s) 489, 597, 603
Hsp92II CATG 2 cut(s) 202, 572
HspAI GCGC 2 cut(s) 385, 387
Ksp22I TGATCA 1 cut(s) 292
Kzo9I GATC 1 cut(s) 292
LguI GCTCTTC 1 cut(s) 228
LmnI GCTCC 4 cut(s) 31, 424, 450, 546
Lsp1109I GCAGC 3 cut(s) 232, 428, 580
MabI ACCWGGT 1 cut(s) 68
MaeI CTAG 1 cut(s) 428
MaeIII GTNAC 2 cut(s) 484, 502
MalI GATC 1 cut(s) 294
MbiI CCGCTC 1 cut(s) 553
MboI GATC 1 cut(s) 292
MboII GAAGA 6 cut(s) 103, 245, 316, 361, 529, 623
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 2 cut(s) 252, 465
MnlI CCTC 6 cut(s) 93, 168, 313, 415, 465, 592
Mph1103I ATGCAT 1 cut(s) 532
MseI TTAA 1 cut(s) 75
MslI CAYNNNNRTG 1 cut(s) 15
MspR9I CCNGG 6 cut(s) 27, 70, 97, 116, 142, 580
MvaI CCWGG 6 cut(s) 27, 70, 97, 116, 142, 580
MvnI CGCG 1 cut(s) 387
MwoI GCNNNNNNNGC 3 cut(s) 116, 590, 599
NdeI CATATG 1 cut(s) 532
NdeII GATC 1 cut(s) 292
NheI GCTAGC 1 cut(s) 427
NlaIII CATG 2 cut(s) 202, 572
NlaIV GGNNCC 1 cut(s) 577
NmuCI GTSAC 2 cut(s) 484, 502
NsiI ATGCAT 1 cut(s) 532
PasI CCCWGGG 1 cut(s) 26
PauI GCGCGC 1 cut(s) 385
PceI AGGCCT 1 cut(s) 145
PciSI GCTCTTC 1 cut(s) 228
PfeI GAWTC 1 cut(s) 410
PkrI GCNGC 3 cut(s) 247, 418, 595
PpuMI RGGWCCY 1 cut(s) 452
Psp5II RGGWCCY 1 cut(s) 452
Psp6I CCWGG 6 cut(s) 25, 68, 95, 114, 140, 578
PspFI CCCAGC 1 cut(s) 441
PspGI CCWGG 6 cut(s) 25, 68, 95, 114, 140, 578
PspN4I GGNNCC 1 cut(s) 577
PspPI GGNCC 3 cut(s) 155, 452, 576
PspPPI RGGWCCY 1 cut(s) 452
PstI CTGCAG 2 cut(s) 418, 511
PstNI CAGNNNCTG 1 cut(s) 488
PteI GCGCGC 1 cut(s) 385
RseI CAYNNNNRTG 1 cut(s) 15
SapI GCTCTTC 1 cut(s) 228
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 3 cut(s) 246, 417, 594
Sau3AI GATC 1 cut(s) 292
Sau96I GGNCC 3 cut(s) 155, 452, 576
ScrFI CCNGG 6 cut(s) 27, 70, 97, 116, 142, 580
SduI GDGCHC 1 cut(s) 36
SexAI ACCWGGT 1 cut(s) 68
SfcI CTRYAG 2 cut(s) 414, 507
SinI GGWCC 2 cut(s) 155, 452
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
Sse9I AATT 2 cut(s) 252, 465
SseBI AGGCCT 1 cut(s) 145
SsiI CCGC 1 cut(s) 553
SspMI CTAG 1 cut(s) 428
StuI AGGCCT 1 cut(s) 145
StyD4I CCNGG 6 cut(s) 25, 68, 95, 114, 140, 578
StyI CCWWGG 3 cut(s) 257, 380, 448
TaaI ACNGT 1 cut(s) 311
TasI AATT 2 cut(s) 252, 465
TfiI GAWTC 1 cut(s) 410
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TscAI CASTG 3 cut(s) 53, 493, 511
TseFI GTSAC 2 cut(s) 484, 502
TseI GCWGC 3 cut(s) 245, 416, 593
Tsp45I GTSAC 2 cut(s) 484, 502
TspDTI ATGAA 2 cut(s) 215, 530
TspGWI ACGGA 3 cut(s) 152, 533, 554
TspRI CASTG 3 cut(s) 53, 493, 511
VpaK11BI GGWCC 2 cut(s) 155, 452
XapI RAATTY 1 cut(s) 252
XspI CTAG 1 cut(s) 428
Zsp2I ATGCAT 1 cut(s) 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.