RchiOBHm_Chr1g0337761

UPF0496 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0007544
Physical Location & Seq
Reverse (-)
29681784 .. 29683641
1858 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56564

Sequence Viewer

Length: 285 bp
ATGGCCCTTGAATTTTTGGCAGGAGCACCGTTTCAGCTCATGTACGACATGGTTAAGGTAGCGCTCCGGAATACGAAGTTATTCAGGTCTCAACTTAGGCAGCTGGAAAACATACTCAAAATTCTCCAGCCTCAAATTCTTGAGCAGATAAGACAAAACAATGTGCAGCTTCACCTTTCAACCCTACACATAAAAGAGCTCCGGCTGAAAATTGAAGACGGTTTAATGCTCCTCGAAAAATTAGGAAGTATTAGCAATTTTAATGTGCACGTTTGGGGTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF677

Protein Analysis

94

Amino Acids

10.94

Weight (kDa)

9.6

Isoelectric Point (pI)

58.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 8 - 90 2.1e-06 Arabidopsis broad-spectrum mildew resistance protein RPW8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 66
AcsI RAATTY 3 cut(s) 11, 120, 135
AfaI GTAC 1 cut(s) 44
AfeI AGCGCT 1 cut(s) 63
AgsI TTSAA 3 cut(s) 11, 180, 215
AluBI AGCT 4 cut(s) 37, 103, 169, 199
AluI AGCT 4 cut(s) 37, 103, 169, 199
Alw21I GWGCWC 3 cut(s) 28, 201, 270
Alw26I GTCTC 1 cut(s) 93
Alw44I GTGCAC 1 cut(s) 266
Aor13HI TCCGGA 1 cut(s) 66
Aor51HI AGCGCT 1 cut(s) 63
AoxI GGCC 1 cut(s) 3
ApaLI GTGCAC 1 cut(s) 266
ApeKI GCWGC 2 cut(s) 100, 166
ApoI RAATTY 3 cut(s) 11, 120, 135
Asp700I GAANNNNTTC 1 cut(s) 80
AspLEI GCGC 1 cut(s) 64
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 164
BaeGI GKGCMC 1 cut(s) 270
BanII GRGCYC 1 cut(s) 201
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 3 cut(s) 28, 201, 270
BbvI GCAGC 2 cut(s) 112, 178
BcoDI GTCTC 1 cut(s) 93
BfoI RGCGCY 1 cut(s) 65
BisI GCNGC 2 cut(s) 101, 167
BlsI GCNGC 2 cut(s) 102, 168
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 280
BpiI GAAGAC 1 cut(s) 222
BpmI CTGGAG 1 cut(s) 110
BpuEI CTTGAG 1 cut(s) 161
BsaI GGTCTC 1 cut(s) 93
BsaWI WCCGGW 1 cut(s) 66
BseAI TCCGGA 1 cut(s) 66
BseRI GAGGAG 1 cut(s) 221
BseSI GKGCMC 1 cut(s) 270
BseXI GCAGC 2 cut(s) 112, 178
BsgI GTGCAG 1 cut(s) 185
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 3 cut(s) 28, 201, 270
BsiSI CCGG 2 cut(s) 67, 202
BsmAI GTCTC 1 cut(s) 93
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 93
Bsp1286I GDGCHC 3 cut(s) 28, 201, 270
Bsp13I TCCGGA 1 cut(s) 66
BspANI GGCC 1 cut(s) 5
BspEI TCCGGA 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 280
BspTNI GGTCTC 1 cut(s) 93
Bst4CI ACNGT 2 cut(s) 30, 221
BstDEI CTNAG 1 cut(s) 95
BstH2I RGCGCY 1 cut(s) 65
BstHHI GCGC 1 cut(s) 64
BstMAI GTCTC 1 cut(s) 93
BstSLI GKGCMC 1 cut(s) 270
BstV1I GCAGC 2 cut(s) 112, 178
BstV2I GAAGAC 1 cut(s) 222
BsuRI GGCC 1 cut(s) 5
CfoI GCGC 1 cut(s) 64
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 43
CviAII CATG 2 cut(s) 40, 49
CviJI RGCY 7 cut(s) 5, 37, 103, 130, 169, 199, 205
CviKI_1 RGCY 7 cut(s) 5, 37, 103, 130, 169, 199, 205
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 1 cut(s) 95
Ecl136II GAGCTC 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 201
Eco31I GGTCTC 1 cut(s) 93
Eco47III AGCGCT 1 cut(s) 63
Eco53kI GAGCTC 1 cut(s) 199
EcoICRI GAGCTC 1 cut(s) 199
EcoT38I GRGCYC 1 cut(s) 201
FaeI CATG 2 cut(s) 43, 52
FaiI YATR 4 cut(s) 41, 50, 113, 191
FatI CATG 2 cut(s) 39, 48
Fnu4HI GCNGC 2 cut(s) 101, 167
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 2 cut(s) 101, 167
GlaI GCGC 1 cut(s) 63
GluI GCNGC 2 cut(s) 101, 167
GsuI CTGGAG 1 cut(s) 110
HaeII RGCGCY 1 cut(s) 65
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 67, 202
HhaI GCGC 1 cut(s) 64
Hin1II CATG 2 cut(s) 43, 52
Hin6I GCGC 1 cut(s) 62
HinP1I GCGC 1 cut(s) 62
HpaII CCGG 2 cut(s) 67, 202
HphI GGTGA 1 cut(s) 164
Hpy166II GTNNAC 1 cut(s) 268
Hpy188III TCNNGA 3 cut(s) 67, 140, 282
Hpy8I GTNNAC 1 cut(s) 268
HpyCH4III ACNGT 2 cut(s) 30, 221
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 2 cut(s) 166, 268
HpyF3I CTNAG 1 cut(s) 95
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 2 cut(s) 43, 52
HspAI GCGC 1 cut(s) 62
Kpn2I TCCGGA 1 cut(s) 66
LmnI GCTCC 4 cut(s) 23, 69, 204, 234
LpnPI CCDG 6 cut(s) 6, 70, 80, 89, 140, 215
Lsp1109I GCAGC 2 cut(s) 112, 178
MaeII ACGT 1 cut(s) 270
MboII GAAGA 1 cut(s) 227
MhlI GDGCHC 3 cut(s) 28, 201, 270
MluCI AATT 6 cut(s) 11, 120, 135, 210, 239, 256
MnlI CCTC 2 cut(s) 141, 242
MroI TCCGGA 1 cut(s) 66
MroXI GAANNNNTTC 1 cut(s) 80
MseI TTAA 3 cut(s) 54, 224, 261
MspA1I CMGCKG 1 cut(s) 103
MspI CCGG 2 cut(s) 67, 202
NlaIII CATG 2 cut(s) 43, 52
NlaIV GGNNCC 1 cut(s) 280
PdmI GAANNNNTTC 1 cut(s) 80
PkrI GCNGC 2 cut(s) 102, 168
Psp124BI GAGCTC 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 280
PspPI GGNCC 1 cut(s) 4
PvuII CAGCTG 1 cut(s) 103
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SacI GAGCTC 1 cut(s) 201
SaqAI TTAA 3 cut(s) 54, 224, 261
SatI GCNGC 2 cut(s) 101, 167
Sau96I GGNCC 1 cut(s) 4
SduI GDGCHC 3 cut(s) 28, 201, 270
SetI ASST 8 cut(s) 39, 60, 89, 105, 171, 177, 201, 273
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 6 cut(s) 11, 120, 135, 210, 239, 256
SstI GAGCTC 1 cut(s) 201
TaaI ACNGT 2 cut(s) 30, 221
TaiI ACGT 1 cut(s) 273
TaqI TCGA 1 cut(s) 234
TasI AATT 6 cut(s) 11, 120, 135, 210, 239, 256
Tru1I TTAA 3 cut(s) 54, 224, 261
Tru9I TTAA 3 cut(s) 54, 224, 261
TseI GCWGC 2 cut(s) 100, 166
VneI GTGCAC 1 cut(s) 266
XapI RAATTY 3 cut(s) 11, 120, 135
XmnI GAANNNNTTC 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.