Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0007544

Physical Location & Seq

Genomic Coordinates Reverse (-)

48871205 .. 48875767

Gene Structure 4563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029773

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGCTTCTGTCATTTTGAACTTCGTTGGGGGAGTGCCGTTTCGGGCTTTATATGAAGCGGTTAAGGCCGCCATTAAGAGCAGTCATCAGTTCAAAGCGGAACTACAAGATCTTGAATTTGCATTGCGTTGCTTCAGACCAGAAGCCCTCAAGGAGATGGATGCCATCAGTAGCAGAATAAATCTCTCCACCGAGACGGTAAGAGATTTGGAGAAGAAACTAATTGAAGCTAGCTATGCAGAGAAGCTCAATGGCATCACTATGTCTCTTCGGAGGTTGGCTTTGATGCTAGGGATGGATGGGCTGAGGCACGTGATGGAGATCTTGGAGTTAACCAGGAGATCCAAGGATGATAAATTGAACAAGGTGCTGAGTATAGTTGAAAATGTGGCCAAACAAGTAAATGATGTCTCGATGAAGTTGGAGAAGGCACAAGAGAGGGCCAATGAAATAAGAGCTCTGTTAGCTGGGCTTAATGGCAGTAGTTTAGGAGGAAGGGATGGGGCTGCCCTCCTTGTAGACTTTAAGAATTTGATCGAAGCTCAAGGCGGTGAAGGCTTTTTCAACATCTTCTCTCAGCTTCTGGATAAAATTTTGAAGCTCGAGCAGAATGTTAAAACTGAAGGACCAACTGCAGCAAGGGGGGAAAGGAAAGCAAAGGAAGGTTCTAGTTTATGTGAGATACAAGTGGCTTTCGCTGTCACACCTTCATCAACCTTTGTTAAAACTGAAAAAGGCACCGTGTCAAGGAGGAAACTTAAAGGGAAACAGAACAATGGAGGTTCAAGTTTGTCCTTGGTTGATAACAGGACATCAAGAGAGGTTGTGAACCTATGTGAGATGCAAGTGGCTGCTGCAGCCTGCGTGCTAGCCTCCATGTCCGGCCGCATCCCATTCCCACATCACATAAGAAATCTGAAATTTGGCTTTGGCTGTCTTATTGCAAATCACAGTGTGTTCCACATTGCAGTAATGCAGATAGATGAAGAGTTTAACAAGTCAATTTCTCAGCTGCTTTCGGATTTGCTTGGTCTCCATGGATACTGCAGTCTCGTGATCCTGACTGATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

358

Amino Acids

39.2

Weight (kDa)

8.93

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007544)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0337761 RchiOBHm_Chr1g0337831
rosa_laevigata	RLG00000015780 RLG00000029499 RLG00000029520 RLG00000029773
rosa_multiflora	Rmu_sc0002899.1_g000001 Rmu_sc0003367.1_g000022 Rmu_sc0006537.1_g000039
rosa_roxburghii	Rroxscaffold_1G00022150 Rroxscaffold_4G00328560
rosa_samantha	Rh1AG111900 Rh1CG099600 Rh1CG107600 Rh1CG108700 Rh1DG106800 Rh1DG115000 Rh1DG116400 Rh2AG020700 Rh2AG020800 Rh2CG021700 Rh2CG158100 Rh2DG021400 Rh2DG021500 Rh7AG065400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	737
AccI	GTMKAC	1 cut(s)	519
AciI	CCGC	5 cut(s)	59, 69, 98, 549, 886
AclWI	GGATC	2 cut(s)	336, 1051
AcoI	YGGCCR	2 cut(s)	390, 883
AcsI	RAATTY	4 cut(s)	116, 529, 591, 920
AcuI	CTGAAG	2 cut(s)	118, 642
AcvI	CACGTG	1 cut(s)	313
AdeI	CACNNNGTG	1 cut(s)	955
AfiI	CCNNNNNNNGG	1 cut(s)	747
AgsI	TTSAA	9 cut(s)	19, 94, 116, 227, 361, 383, 565, 598, 786
AjnI	CCWGG	1 cut(s)	335
AluBI	AGCT	9 cut(s)	230, 234, 247, 458, 467, 542, 580, 601, 1012
AluI	AGCT	9 cut(s)	230, 234, 247, 458, 467, 542, 580, 601, 1012
Alw21I	GWGCWC	1 cut(s)	460
Alw26I	GTCTC	5 cut(s)	188, 270, 415, 1037, 1055
AlwI	GGATC	2 cut(s)	336, 1051
AlwNI	CAGNNNCTG	1 cut(s)	583
Ama87I	CYCGRG	1 cut(s)	602
AoxI	GGCC	4 cut(s)	66, 390, 441, 883
ApeKI	GCWGC	6 cut(s)	506, 635, 851, 854, 857, 1012
ApoI	RAATTY	4 cut(s)	116, 529, 591, 920
AspS9I	GGNCC	2 cut(s)	441, 626
AsuHPI	GGTGA	1 cut(s)	563
AsuNHI	GCTAGC	2 cut(s)	230, 868
AvaI	CYCGRG	1 cut(s)	602
AvaII	GGWCC	1 cut(s)	626
BaeI	ACNNNNGTAYC	2 cut(s)	1033, 1066
BalI	TGGCCA	1 cut(s)	392
BanI	GGYRCC	1 cut(s)	737
BanII	GRGCYC	1 cut(s)	460
BauI	CACGAG	1 cut(s)	1052
BbrPI	CACGTG	1 cut(s)	313
Bbv12I	GWGCWC	1 cut(s)	460
BbvCI	CCTCAGC	1 cut(s)	305
BbvI	GCAGC	6 cut(s)	493, 647, 838, 841, 869, 999
BccI	CCATC	6 cut(s)	151, 173, 289, 293, 310, 494
BceAI	ACGGC	1 cut(s)	22
BciT130I	CCWGG	1 cut(s)	337
BciVI	GTATCC	1 cut(s)	1034
BcoDI	GTCTC	5 cut(s)	188, 270, 415, 1037, 1055
BfaI	CTAG	4 cut(s)	231, 290, 669, 869
BfmI	CTRYAG	3 cut(s)	633, 855, 1045
BfuI	GTATCC	1 cut(s)	1034
BglII	AGATCT	2 cut(s)	109, 321
BisI	GCNGC	8 cut(s)	69, 507, 636, 852, 855, 858, 886, 1013
BlsI	GCNGC	8 cut(s)	70, 508, 637, 853, 856, 859, 887, 1014
Bme1390I	CCNGG	1 cut(s)	337
Bme18I	GGWCC	1 cut(s)	626
BmeT110I	CYCGRG	1 cut(s)	602
BmgT120I	GGNCC	2 cut(s)	441, 626
BmiI	GGNNCC	1 cut(s)	739
BmrFI	CCNGG	1 cut(s)	337
BmsI	GCATC	5 cut(s)	151, 264, 276, 831, 897
BmtI	GCTAGC	2 cut(s)	234, 872
Bpu10I	CCTNAGC	1 cut(s)	305
BpuEI	CTTGAG	2 cut(s)	134, 528
BsaAI	YACGTR	1 cut(s)	313
BsaBI	GATNNNNATC	1 cut(s)	320
BsaI	GGTCTC	1 cut(s)	1037
BsaJI	CCNNGG	3 cut(s)	345, 795, 1036
Bsc4I	CCNNNNNNNGG	1 cut(s)	747
Bse3DI	GCAATG	2 cut(s)	122, 963
Bse8I	GATNNNNATC	1 cut(s)	320
BseBI	CCWGG	1 cut(s)	337
BseDI	CCNNGG	3 cut(s)	345, 795, 1036
BseGI	GGATG	6 cut(s)	166, 300, 304, 355, 505, 888
BseJI	GATNNNNATC	1 cut(s)	320
BseLI	CCNNNNNNNGG	1 cut(s)	747
BseMI	GCAATG	2 cut(s)	122, 963
BseMII	CTCAG	4 cut(s)	296, 362, 590, 1022
BseX3I	CGGCCG	1 cut(s)	883
BseXI	GCAGC	6 cut(s)	493, 647, 838, 841, 869, 999
BseYI	CCCAGC	1 cut(s)	467
Bsh1285I	CGRYCG	1 cut(s)	886
BshFI	GGCC	4 cut(s)	68, 392, 443, 885
BshNI	GGYRCC	1 cut(s)	737
BsiEI	CGRYCG	1 cut(s)	886
BsiHKAI	GWGCWC	1 cut(s)	460
BsiHKCI	CYCGRG	1 cut(s)	602
BsiSI	CCGG	1 cut(s)	882
BslI	CCNNNNNNNGG	1 cut(s)	747
BsmAI	GTCTC	5 cut(s)	188, 270, 415, 1037, 1055
BsmBI	CGTCTC	1 cut(s)	188
BsnI	GGCC	4 cut(s)	68, 392, 443, 885
Bso31I	GGTCTC	1 cut(s)	1037
BsoBI	CYCGRG	1 cut(s)	602
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp143I	GATC	5 cut(s)	109, 321, 341, 534, 1056
Bsp19I	CCATGG	1 cut(s)	1036
BspACI	CCGC	5 cut(s)	59, 69, 98, 549, 886
BspANI	GGCC	4 cut(s)	68, 392, 443, 885
BspCNI	CTCAG	4 cut(s)	297, 363, 589, 1021
BspHI	TCATGA	1 cut(s)	1070
BspLI	GGNNCC	1 cut(s)	739
BspMAI	CTGCAG	3 cut(s)	637, 859, 1049
BspOI	GCTAGC	2 cut(s)	234, 872
BspPI	GGATC	2 cut(s)	336, 1051
BspT107I	GGYRCC	1 cut(s)	737
BspTNI	GGTCTC	1 cut(s)	1037
BsrDI	GCAATG	2 cut(s)	122, 963
BssECI	CCNNGG	3 cut(s)	345, 795, 1036
BssMI	GATC	5 cut(s)	109, 321, 341, 534, 1056
BssSI	CACGAG	1 cut(s)	1052
BssT1I	CCWWGG	3 cut(s)	345, 795, 1036
Bst2BI	CACGAG	1 cut(s)	1052
Bst2UI	CCWGG	1 cut(s)	337
Bst4CI	ACNGT	3 cut(s)	199, 742, 953
Bst6I	CTCTTC	2 cut(s)	273, 981
BstBAI	YACGTR	1 cut(s)	313
BstC8I	GCNNGC	4 cut(s)	232, 862, 866, 870
BstDEI	CTNAG	4 cut(s)	305, 371, 576, 1008
BstDSI	CCRYGG	1 cut(s)	1036
BstF5I	GGATG	6 cut(s)	166, 300, 304, 355, 505, 888
BstKTI	GATC	5 cut(s)	112, 324, 344, 537, 1059
BstMAI	GTCTC	5 cut(s)	188, 270, 415, 1037, 1055
BstMBI	GATC	5 cut(s)	109, 321, 341, 534, 1056
BstMCI	CGRYCG	1 cut(s)	886
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 236, 464, 555, 857
BstNI	CCWGG	1 cut(s)	337
BstSCI	CCNGG	1 cut(s)	335
BstSFI	CTRYAG	3 cut(s)	633, 855, 1045
BstV1I	GCAGC	6 cut(s)	493, 647, 838, 841, 869, 999
BstX2I	RGATCY	3 cut(s)	109, 321, 341
BstYI	RGATCY	3 cut(s)	109, 321, 341
BstZI	CGGCCG	1 cut(s)	883
BsuI	GTATCC	1 cut(s)	1034
BsuRI	GGCC	4 cut(s)	68, 392, 443, 885
BtgI	CCRYGG	1 cut(s)	1036
BtsCI	GGATG	6 cut(s)	166, 300, 304, 355, 505, 888
BtsIMutI	CAGTG	1 cut(s)	958
Cac8I	GCNNGC	4 cut(s)	232, 862, 866, 870
CaiI	CAGNNNCTG	1 cut(s)	583
CciI	TCATGA	1 cut(s)	1070
Cfr13I	GGNCC	2 cut(s)	441, 626
CviAII	CATG	3 cut(s)	877, 1037, 1071
DdeI	CTNAG	4 cut(s)	305, 371, 576, 1008
DpnI	GATC	5 cut(s)	111, 323, 343, 536, 1058
DpnII	GATC	5 cut(s)	109, 321, 341, 534, 1056
DraIII	CACNNNGTG	1 cut(s)	955
EaeI	YGGCCR	2 cut(s)	390, 883
EagI	CGGCCG	1 cut(s)	883
Eam1104I	CTCTTC	2 cut(s)	273, 981
EarI	CTCTTC	2 cut(s)	273, 981
Ecl136II	GAGCTC	1 cut(s)	458
EclXI	CGGCCG	1 cut(s)	883
Eco130I	CCWWGG	3 cut(s)	345, 795, 1036
Eco24I	GRGCYC	1 cut(s)	460
Eco31I	GGTCTC	1 cut(s)	1037
Eco47I	GGWCC	1 cut(s)	626
Eco52I	CGGCCG	1 cut(s)	883
Eco53kI	GAGCTC	1 cut(s)	458
Eco57I	CTGAAG	2 cut(s)	118, 642
Eco72I	CACGTG	1 cut(s)	313
Eco88I	CYCGRG	1 cut(s)	602
EcoICRI	GAGCTC	1 cut(s)	458
EcoRII	CCWGG	1 cut(s)	335
EcoT14I	CCWWGG	3 cut(s)	345, 795, 1036
EcoT38I	GRGCYC	1 cut(s)	460
ErhI	CCWWGG	3 cut(s)	345, 795, 1036
Esp3I	CGTCTC	1 cut(s)	188
FaeI	CATG	3 cut(s)	880, 1040, 1074
FatI	CATG	3 cut(s)	876, 1036, 1070
FblI	GTMKAC	1 cut(s)	519
Fnu4HI	GCNGC	8 cut(s)	69, 507, 636, 852, 855, 858, 886, 1013
FokI	GGATG	6 cut(s)	173, 307, 311, 362, 512, 875
FriOI	GRGCYC	1 cut(s)	460
Fsp4HI	GCNGC	8 cut(s)	69, 507, 636, 852, 855, 858, 886, 1013
FspBI	CTAG	4 cut(s)	231, 290, 669, 869
GluI	GCNGC	8 cut(s)	69, 507, 636, 852, 855, 858, 886, 1013
GsaI	CCCAGC	1 cut(s)	471
HaeIII	GGCC	4 cut(s)	68, 392, 443, 885
HapII	CCGG	1 cut(s)	882
Hin1II	CATG	3 cut(s)	880, 1040, 1074
HincII	GTYRAC	1 cut(s)	333
HindII	GTYRAC	1 cut(s)	333
HinfI	GANTC	1 cut(s)	1067
HpaI	GTTAAC	1 cut(s)	333
HpaII	CCGG	1 cut(s)	882
HphI	GGTGA	1 cut(s)	563
Hpy166II	GTNNAC	3 cut(s)	333, 520, 829
Hpy188I	TCNGA	4 cut(s)	137, 273, 918, 1021
Hpy188III	TCNNGA	7 cut(s)	113, 412, 584, 816, 1054, 1060, 1071
Hpy8I	GTNNAC	3 cut(s)	333, 520, 829
HpyAV	CCTTC	6 cut(s)	421, 489, 548, 617, 656, 717
HpyCH4III	ACNGT	3 cut(s)	199, 742, 953
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	9 cut(s)	122, 239, 635, 844, 857, 944, 968, 976, 1047
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 236, 464, 555, 857
HpyF3I	CTNAG	4 cut(s)	305, 371, 576, 1008
HpySE526I	ACGT	1 cut(s)	312
Hsp92II	CATG	3 cut(s)	880, 1040, 1074
KspAI	GTTAAC	1 cut(s)	333
Kzo9I	GATC	5 cut(s)	109, 321, 341, 534, 1056
LpnPI	CCDG	8 cut(s)	153, 322, 349, 453, 569, 793, 874, 895
Lsp1109I	GCAGC	6 cut(s)	493, 647, 838, 841, 869, 999
LweI	GCATC	5 cut(s)	151, 264, 276, 831, 897
MaeI	CTAG	4 cut(s)	231, 290, 669, 869
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	1 cut(s)	700
MalI	GATC	5 cut(s)	111, 323, 343, 536, 1058
MboI	GATC	5 cut(s)	109, 321, 341, 534, 1056
MboII	GAAGA	4 cut(s)	226, 260, 562, 998
MflI	RGATCY	3 cut(s)	109, 321, 341
MhlI	GDGCHC	1 cut(s)	460
MlsI	TGGCCA	1 cut(s)	392
MluCI	AATT	7 cut(s)	116, 222, 356, 529, 591, 920, 1002
MluNI	TGGCCA	1 cut(s)	392
MmeI	TCCRAC	1 cut(s)	402
Mox20I	TGGCCA	1 cut(s)	392
MscI	TGGCCA	1 cut(s)	392
MseI	TTAA	9 cut(s)	63, 75, 332, 474, 525, 615, 723, 759, 993
MslI	CAYNNNNRTG	1 cut(s)	260
Msp20I	TGGCCA	1 cut(s)	392
MspA1I	CMGCKG	1 cut(s)	1012
MspI	CCGG	1 cut(s)	882
MspR9I	CCNGG	1 cut(s)	337
MvaI	CCWGG	1 cut(s)	337
MwoI	GCNNNNNNNGC	5 cut(s)	65, 236, 464, 555, 857
NcoI	CCATGG	1 cut(s)	1036
NdeII	GATC	5 cut(s)	109, 321, 341, 534, 1056
NheI	GCTAGC	2 cut(s)	230, 868
NlaIII	CATG	3 cut(s)	880, 1040, 1074
NlaIV	GGNNCC	1 cut(s)	739
NmuCI	GTSAC	1 cut(s)	700
PaeR7I	CTCGAG	1 cut(s)	602
PagI	TCATGA	1 cut(s)	1070
PfeI	GAWTC	1 cut(s)	1067
PkrI	GCNGC	8 cut(s)	70, 508, 637, 853, 856, 859, 887, 1014
PmaCI	CACGTG	1 cut(s)	313
PmlI	CACGTG	1 cut(s)	313
Ppu21I	YACGTR	1 cut(s)	313
Psp124BI	GAGCTC	1 cut(s)	460
Psp6I	CCWGG	1 cut(s)	335
PspCI	CACGTG	1 cut(s)	313
PspFI	CCCAGC	1 cut(s)	467
PspGI	CCWGG	1 cut(s)	335
PspN4I	GGNNCC	1 cut(s)	739
PspPI	GGNCC	2 cut(s)	441, 626
PspXI	VCTCGAGB	1 cut(s)	602
PstI	CTGCAG	3 cut(s)	637, 859, 1049
PstNI	CAGNNNCTG	1 cut(s)	583
PsuI	RGATCY	3 cut(s)	109, 321, 341
PvuII	CAGCTG	1 cut(s)	1012
RseI	CAYNNNNRTG	1 cut(s)	260
SacI	GAGCTC	1 cut(s)	460
SaqAI	TTAA	9 cut(s)	63, 75, 332, 474, 525, 615, 723, 759, 993
SatI	GCNGC	8 cut(s)	69, 507, 636, 852, 855, 858, 886, 1013
Sau3AI	GATC	5 cut(s)	109, 321, 341, 534, 1056
Sau96I	GGNCC	2 cut(s)	441, 626
ScrFI	CCNGG	1 cut(s)	337
SduI	GDGCHC	1 cut(s)	460
SfaNI	GCATC	5 cut(s)	151, 264, 276, 831, 897
SfcI	CTRYAG	3 cut(s)	633, 855, 1045
Sfr274I	CTCGAG	1 cut(s)	602
SinI	GGWCC	1 cut(s)	626
SlaI	CTCGAG	1 cut(s)	602
SmiMI	CAYNNNNRTG	1 cut(s)	260
SmlI	CTYRAG	3 cut(s)	149, 543, 602
SmoI	CTYRAG	3 cut(s)	149, 543, 602
Sse9I	AATT	7 cut(s)	116, 222, 356, 529, 591, 920, 1002
SsiI	CCGC	5 cut(s)	59, 69, 98, 549, 886
SspMI	CTAG	4 cut(s)	231, 290, 669, 869
SstI	GAGCTC	1 cut(s)	460
StyD4I	CCNGG	1 cut(s)	335
StyI	CCWWGG	3 cut(s)	345, 795, 1036
TaaI	ACNGT	3 cut(s)	199, 742, 953
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	3 cut(s)	413, 537, 603
TasI	AATT	7 cut(s)	116, 222, 356, 529, 591, 920, 1002
TauI	GCSGC	2 cut(s)	71, 888
TfiI	GAWTC	1 cut(s)	1067
Tru1I	TTAA	9 cut(s)	63, 75, 332, 474, 525, 615, 723, 759, 993
Tru9I	TTAA	9 cut(s)	63, 75, 332, 474, 525, 615, 723, 759, 993
TscAI	CASTG	1 cut(s)	958
TseFI	GTSAC	1 cut(s)	700
TseI	GCWGC	6 cut(s)	506, 635, 851, 854, 857, 1012
Tsp45I	GTSAC	1 cut(s)	700
TspDTI	ATGAA	6 cut(s)	69, 431, 462, 699, 999, 1059
TspRI	CASTG	1 cut(s)	958
VpaK11BI	GGWCC	1 cut(s)	626
XapI	RAATTY	4 cut(s)	116, 529, 591, 920
XhoI	CTCGAG	1 cut(s)	602
XmiI	GTMKAC	1 cut(s)	519
XspI	CTAG	4 cut(s)	231, 290, 669, 869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.