Rh1AG111900

UPF0496 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0007544
Physical Location & Seq
Reverse (-)
19324281 .. 19324619
339 bp
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UTR
Exon/CDS
Intron
Rh1AG111900.1

Sequence Viewer

Length: 339 bp
ATGGCTTCTGTCATTTTGAACTTTGTTGGGGGAGTGCCGTTTCAGGCTTTATATGAAGCGGTTAAGGCCGCCATCAAGAGCACTCATCAGTTCAAAGCGGAACTACATGATCTTGAATTTGCATTGCGTTGCTTCAGACCGGAAGCCCTCTGGGGGATGGACGCCATCAGTATCAAAATAAATCTCTCCATCGAGACAGTAAGAGATTTGGAGAAGAAACTAATTGAAGGTAGAGCTATAGTTGAGAAGCTGTCCAAGCTCAGCTATTGGAATTTTCGGATTATAAGTGACTGTTGCGGTGGTAGCTATGCAGAGAAGCTCAATGGCATCAGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF677

Protein Analysis

112

Amino Acids

12.49

Weight (kDa)

7.71

Isoelectric Point (pI)

20.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 11 - 92 2.3e-06 Arabidopsis broad-spectrum mildew resistance protein RPW8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 284
AciI CCGC 4 cut(s) 59, 69, 98, 297
AcsI RAATTY 2 cut(s) 116, 271
AcuI CTGAAG 1 cut(s) 118
AcyI GRCGYC 1 cut(s) 162
AfiI CCNNNNNNNGG 1 cut(s) 153
AgsI TTSAA 4 cut(s) 19, 94, 116, 227
AluBI AGCT 6 cut(s) 236, 250, 259, 264, 306, 319
AluI AGCT 6 cut(s) 236, 250, 259, 264, 306, 319
Alw21I GWGCWC 1 cut(s) 83
Alw26I GTCTC 1 cut(s) 188
AoxI GGCC 1 cut(s) 66
ApoI RAATTY 2 cut(s) 116, 271
Bbv12I GWGCWC 1 cut(s) 83
BccI CCATC 4 cut(s) 80, 151, 173, 197
BceAI ACGGC 1 cut(s) 22
BcoDI GTCTC 1 cut(s) 188
BfmI CTRYAG 1 cut(s) 237
BisI GCNGC 1 cut(s) 69
BlpI GCTNAGC 1 cut(s) 260
BlsI GCNGC 1 cut(s) 70
Bpu1102I GCTNAGC 1 cut(s) 260
BsaHI GRCGYC 1 cut(s) 162
BsaWI WCCGGW 1 cut(s) 139
Bsc4I CCNNNNNNNGG 1 cut(s) 153
Bse3DI GCAATG 1 cut(s) 122
BseGI GGATG 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 153
BseMI GCAATG 1 cut(s) 122
BseMII CTCAG 1 cut(s) 274
BshFI GGCC 1 cut(s) 68
BsiHKAI GWGCWC 1 cut(s) 83
BsiSI CCGG 1 cut(s) 140
BslI CCNNNNNNNGG 1 cut(s) 153
BsmAI GTCTC 1 cut(s) 188
BsnI GGCC 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 83
Bsp143I GATC 1 cut(s) 109
Bsp1720I GCTNAGC 1 cut(s) 260
BspACI CCGC 4 cut(s) 59, 69, 98, 297
BspANI GGCC 1 cut(s) 68
BspCNI CTCAG 1 cut(s) 273
BsrDI GCAATG 1 cut(s) 122
BssMI GATC 1 cut(s) 109
BssNI GRCGYC 1 cut(s) 162
Bst4CI ACNGT 2 cut(s) 199, 293
BstACI GRCGYC 1 cut(s) 162
BstDEI CTNAG 1 cut(s) 260
BstF5I GGATG 1 cut(s) 162
BstKTI GATC 1 cut(s) 112
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 1 cut(s) 109
BstMWI GCNNNNNNNGC 3 cut(s) 65, 256, 303
BstSFI CTRYAG 1 cut(s) 237
BsuRI GGCC 1 cut(s) 68
BtsCI GGATG 1 cut(s) 162
BtsIMutI CAGTG 1 cut(s) 337
CseI GACGC 1 cut(s) 170
CviAII CATG 1 cut(s) 107
DdeI CTNAG 1 cut(s) 260
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 118
FaeI CATG 1 cut(s) 110
FaiI YATR 6 cut(s) 52, 54, 108, 239, 284, 309
FatI CATG 1 cut(s) 106
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 1 cut(s) 169
Fsp4HI GCNGC 1 cut(s) 69
GluI GCNGC 1 cut(s) 69
HaeIII GGCC 1 cut(s) 68
HapII CCGG 1 cut(s) 140
HgaI GACGC 1 cut(s) 170
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 1 cut(s) 110
HpaII CCGG 1 cut(s) 140
Hpy188I TCNGA 2 cut(s) 137, 279
Hpy188III TCNNGA 3 cut(s) 76, 113, 193
HpyAV CCTTC 1 cut(s) 221
HpyCH4III ACNGT 2 cut(s) 199, 293
HpyCH4V TGCA 2 cut(s) 122, 311
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 256, 303
HpyF3I CTNAG 1 cut(s) 260
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 1 cut(s) 110
Kzo9I GATC 1 cut(s) 109
LpnPI CCDG 3 cut(s) 29, 136, 153
MaeIII GTNAC 1 cut(s) 287
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 1 cut(s) 226
MhlI GDGCHC 1 cut(s) 83
MluCI AATT 3 cut(s) 116, 222, 271
MnlI CCTC 1 cut(s) 158
MseI TTAA 1 cut(s) 63
MspI CCGG 1 cut(s) 140
MwoI GCNNNNNNNGC 3 cut(s) 65, 256, 303
NdeII GATC 1 cut(s) 109
NlaIII CATG 1 cut(s) 110
NmuCI GTSAC 1 cut(s) 287
PkrI GCNGC 1 cut(s) 70
PsiI TTATAA 1 cut(s) 284
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 1 cut(s) 109
SduI GDGCHC 1 cut(s) 83
SetI ASST 7 cut(s) 232, 238, 252, 261, 266, 308, 321
SfcI CTRYAG 1 cut(s) 237
SgeI CNNG 8 cut(s) 56, 88, 119, 125, 152, 163, 205, 268
Sse9I AATT 3 cut(s) 116, 222, 271
SsiI CCGC 4 cut(s) 59, 69, 98, 297
TaaI ACNGT 2 cut(s) 199, 293
TaqI TCGA 1 cut(s) 192
TasI AATT 3 cut(s) 116, 222, 271
TauI GCSGC 1 cut(s) 71
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 1 cut(s) 337
TseFI GTSAC 1 cut(s) 287
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 1 cut(s) 69
TspRI CASTG 1 cut(s) 337
XapI RAATTY 2 cut(s) 116, 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.