Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0007544

Physical Location & Seq

Genomic Coordinates Reverse (-)

1704231 .. 1704860

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG021700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGATACTTATGAGACAGATTGCCATTTGGACCAAGGCACTATACGACGACCGGGATGATGGAACGGGGAAAAATCAGGTTAGCAATCAGCCTAATGATATAATTGGCCAAGGTGTTTCGGCAAGAGAAGGGTCTGCTGCTCCTTCTCTGATATCACAACTTCTGAGTGCATTTCGTGCCTTCTCCGATGCCCTACAAGGAAGTTCGAAAAGTTGCAAGATTTATACACGCCTGGAACTGATTCTAAAATGTCTGGAACCATTGCTGTTACTGCTATCTACATATGGTAAGGCCTTCCATTCAAAGGAAGAACTGTTGAAGGAACTACGTTTGTGCCTATCTACACAGCTTGTTGGCAAATTTTGGAATATGTACAATAGTGATTACAAGGACAAGCTTTCTCAGTTAGACTTTGATCTCCAAGACCTCTTCCTTATACTGTTCTTGGAAATTGAAAATGATTTAAAGAGCTTGCAATGGGAGATCGATCAGCAGCGTGCTTTGGTTCCAGCATGTGAAGGGCAATTAGTCTCTGAAGTTGACGCTGTAGCAGCGGAATCAGTCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

189

Amino Acids

21.22

Weight (kDa)

4.78

Isoelectric Point (pI)

38.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007544)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0337761 RchiOBHm_Chr1g0337831
rosa_laevigata	RLG00000015780 RLG00000029499 RLG00000029520 RLG00000029773
rosa_multiflora	Rmu_sc0002899.1_g000001 Rmu_sc0003367.1_g000022 Rmu_sc0006537.1_g000039
rosa_roxburghii	Rroxscaffold_1G00022150 Rroxscaffold_4G00328560
rosa_samantha	Rh1AG111900 Rh1CG099600 Rh1CG107600 Rh1CG108700 Rh1DG106800 Rh1DG115000 Rh1DG116400 Rh2AG020700 Rh2AG020800 Rh2CG021700 Rh2CG158100 Rh2DG021400 Rh2DG021500 Rh7AG065400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	554
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	1 cut(s)	359
AcuI	CTGAAG	1 cut(s)	555
AfaI	GTAC	1 cut(s)	374
AfiI	CCNNNNNNNGG	1 cut(s)	304
AgsI	TTSAA	3 cut(s)	303, 319, 455
AjnI	CCWGG	1 cut(s)	231
AluBI	AGCT	3 cut(s)	349, 397, 471
AluI	AGCT	3 cut(s)	349, 397, 471
Alw26I	GTCTC	2 cut(s)	7, 535
AoxI	GGCC	2 cut(s)	106, 291
ApeKI	GCWGC	3 cut(s)	137, 493, 551
ApoI	RAATTY	1 cut(s)	359
Asp700I	GAANNNNTTC	1 cut(s)	240
AspS9I	GGNCC	1 cut(s)	30
AsuC2I	CCSGG	1 cut(s)	53
AsuII	TTCGAA	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	30
BalI	TGGCCA	1 cut(s)	108
BbvI	GCAGC	3 cut(s)	124, 505, 563
BccI	CCATC	1 cut(s)	53
BciT130I	CCWGG	1 cut(s)	233
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	2 cut(s)	7, 535
BfmI	CTRYAG	1 cut(s)	546
BisI	GCNGC	3 cut(s)	138, 494, 552
BlsI	GCNGC	3 cut(s)	139, 495, 553
Bme1390I	CCNGG	2 cut(s)	53, 233
Bme18I	GGWCC	1 cut(s)	30
BmgT120I	GGNCC	1 cut(s)	30
BmiI	GGNNCC	2 cut(s)	258, 507
BmrFI	CCNGG	2 cut(s)	53, 233
BmsI	GCATC	1 cut(s)	178
Bpu14I	TTCGAA	1 cut(s)	206
BpuMI	CCSGG	1 cut(s)	53
Bsa29I	ATCGAT	1 cut(s)	486
BsaJI	CCNNGG	2 cut(s)	33, 109
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
Bse3DI	GCAATG	2 cut(s)	260, 482
BseBI	CCWGG	1 cut(s)	233
BseCI	ATCGAT	1 cut(s)	486
BseDI	CCNNGG	2 cut(s)	33, 109
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseMI	GCAATG	2 cut(s)	260, 482
BseMII	CTCAG	2 cut(s)	155, 416
BseXI	GCAGC	3 cut(s)	124, 505, 563
Bsh1285I	CGRYCG	1 cut(s)	52
BshFI	GGCC	2 cut(s)	108, 293
BshVI	ATCGAT	1 cut(s)	486
BsiEI	CGRYCG	1 cut(s)	52
BsiSI	CCGG	1 cut(s)	52
BslI	CCNNNNNNNGG	1 cut(s)	304
BsmAI	GTCTC	2 cut(s)	7, 535
BsnI	GGCC	2 cut(s)	108, 293
Bsp119I	TTCGAA	1 cut(s)	206
Bsp1407I	TGTACA	1 cut(s)	372
Bsp143I	GATC	3 cut(s)	415, 483, 487
BspACI	CCGC	1 cut(s)	554
BspANI	GGCC	2 cut(s)	108, 293
BspCNI	CTCAG	2 cut(s)	156, 415
BspDI	ATCGAT	1 cut(s)	486
BspLI	GGNNCC	2 cut(s)	258, 507
BspT104I	TTCGAA	1 cut(s)	206
BsrDI	GCAATG	2 cut(s)	260, 482
BsrGI	TGTACA	1 cut(s)	372
BssECI	CCNNGG	2 cut(s)	33, 109
BssMI	GATC	3 cut(s)	415, 483, 487
BssT1I	CCWWGG	2 cut(s)	33, 109
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	2 cut(s)	315, 441
Bst6I	CTCTTC	1 cut(s)	434
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstAUI	TGTACA	1 cut(s)	372
BstBI	TTCGAA	1 cut(s)	206
BstC8I	GCNNGC	2 cut(s)	473, 498
BstDEI	CTNAG	2 cut(s)	164, 402
BstF5I	GGATG	1 cut(s)	61
BstKTI	GATC	3 cut(s)	418, 486, 490
BstMAI	GTCTC	2 cut(s)	7, 535
BstMBI	GATC	3 cut(s)	415, 483, 487
BstMCI	CGRYCG	1 cut(s)	52
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 271, 551
BstNI	CCWGG	1 cut(s)	233
BstNSI	RCATGY	1 cut(s)	516
BstSCI	CCNGG	2 cut(s)	51, 231
BstSFI	CTRYAG	1 cut(s)	546
BstV1I	GCAGC	3 cut(s)	124, 505, 563
Bsu15I	ATCGAT	1 cut(s)	486
BsuRI	GGCC	2 cut(s)	108, 293
BsuTUI	ATCGAT	1 cut(s)	486
BtsCI	GGATG	1 cut(s)	61
Cac8I	GCNNGC	2 cut(s)	473, 498
Cfr13I	GGNCC	1 cut(s)	30
ClaI	ATCGAT	1 cut(s)	486
CseI	GACGC	1 cut(s)	551
Csp6I	GTAC	1 cut(s)	373
CviAII	CATG	1 cut(s)	513
CviJI	RGCY	6 cut(s)	91, 108, 293, 349, 397, 471
CviKI_1	RGCY	6 cut(s)	91, 108, 293, 349, 397, 471
CviQI	GTAC	1 cut(s)	373
DdeI	CTNAG	2 cut(s)	164, 402
DpnI	GATC	3 cut(s)	417, 485, 489
DpnII	GATC	3 cut(s)	415, 483, 487
DraI	TTTAAA	1 cut(s)	465
EaeI	YGGCCR	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	434
EarI	CTCTTC	1 cut(s)	434
Eco130I	CCWWGG	2 cut(s)	33, 109
Eco147I	AGGCCT	1 cut(s)	293
Eco32I	GATATC	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	555
EcoRII	CCWGG	1 cut(s)	231
EcoRV	GATATC	1 cut(s)	153
EcoT14I	CCWWGG	2 cut(s)	33, 109
ErhI	CCWWGG	2 cut(s)	33, 109
FaeI	CATG	1 cut(s)	516
FaiI	YATR	9 cut(s)	11, 43, 101, 225, 283, 285, 371, 437, 514
FatI	CATG	1 cut(s)	512
FauNDI	CATATG	1 cut(s)	283
Fnu4HI	GCNGC	3 cut(s)	138, 494, 552
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	3 cut(s)	138, 494, 552
GluI	GCNGC	3 cut(s)	138, 494, 552
HaeIII	GGCC	2 cut(s)	108, 293
HapII	CCGG	1 cut(s)	52
HgaI	GACGC	1 cut(s)	551
Hin1II	CATG	1 cut(s)	516
HincII	GTYRAC	1 cut(s)	541
HindII	GTYRAC	1 cut(s)	541
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	2 cut(s)	241, 557
HpaII	CCGG	1 cut(s)	52
Hpy166II	GTNNAC	1 cut(s)	541
Hpy188I	TCNGA	4 cut(s)	150, 165, 187, 535
Hpy188III	TCNNGA	1 cut(s)	254
Hpy8I	GTNNAC	1 cut(s)	541
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	6 cut(s)	122, 153, 190, 304, 313, 512
HpyCH4III	ACNGT	2 cut(s)	315, 441
HpyCH4IV	ACGT	1 cut(s)	328
HpyCH4V	TGCA	3 cut(s)	170, 216, 475
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 271, 551
HpyF3I	CTNAG	2 cut(s)	164, 402
HpySE526I	ACGT	1 cut(s)	328
Hsp92II	CATG	1 cut(s)	516
Kzo9I	GATC	3 cut(s)	415, 483, 487
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	6 cut(s)	62, 65, 218, 239, 245, 522
Lsp1109I	GCAGC	3 cut(s)	124, 505, 563
LweI	GCATC	1 cut(s)	178
MaeII	ACGT	1 cut(s)	328
MaeIII	GTNAC	1 cut(s)	267
MalI	GATC	3 cut(s)	417, 485, 489
MboI	GATC	3 cut(s)	415, 483, 487
MboII	GAAGA	2 cut(s)	320, 421
MlsI	TGGCCA	1 cut(s)	108
MluCI	AATT	4 cut(s)	102, 359, 450, 524
MluNI	TGGCCA	1 cut(s)	108
MnlI	CCTC	1 cut(s)	437
Mox20I	TGGCCA	1 cut(s)	108
MroXI	GAANNNNTTC	1 cut(s)	240
MscI	TGGCCA	1 cut(s)	108
MseI	TTAA	2 cut(s)	464, 568
Msp20I	TGGCCA	1 cut(s)	108
MspA1I	CMGCKG	1 cut(s)	554
MspI	CCGG	1 cut(s)	52
MspR9I	CCNGG	2 cut(s)	53, 233
MvaI	CCWGG	1 cut(s)	233
MwoI	GCNNNNNNNGC	3 cut(s)	176, 271, 551
NciI	CCSGG	1 cut(s)	53
NdeI	CATATG	1 cut(s)	283
NdeII	GATC	3 cut(s)	415, 483, 487
NlaIII	CATG	1 cut(s)	516
NlaIV	GGNNCC	2 cut(s)	258, 507
NspI	RCATGY	1 cut(s)	516
NspV	TTCGAA	1 cut(s)	206
PceI	AGGCCT	1 cut(s)	293
PdmI	GAANNNNTTC	1 cut(s)	240
PfeI	GAWTC	2 cut(s)	241, 557
PkrI	GCNGC	3 cut(s)	139, 495, 553
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	2 cut(s)	258, 507
PspPI	GGNCC	1 cut(s)	30
RsaI	GTAC	1 cut(s)	374
RsaNI	GTAC	1 cut(s)	373
SaqAI	TTAA	2 cut(s)	464, 568
SatI	GCNGC	3 cut(s)	138, 494, 552
Sau3AI	GATC	3 cut(s)	415, 483, 487
Sau96I	GGNCC	1 cut(s)	30
ScrFI	CCNGG	2 cut(s)	53, 233
SetI	ASST	7 cut(s)	81, 115, 331, 351, 399, 429, 473
SfaNI	GCATC	1 cut(s)	178
SfcI	CTRYAG	1 cut(s)	546
SfuI	TTCGAA	1 cut(s)	206
SinI	GGWCC	1 cut(s)	30
Sse9I	AATT	4 cut(s)	102, 359, 450, 524
SseBI	AGGCCT	1 cut(s)	293
SsiI	CCGC	1 cut(s)	554
StuI	AGGCCT	1 cut(s)	293
StyD4I	CCNGG	2 cut(s)	51, 231
StyI	CCWWGG	2 cut(s)	33, 109
TaaI	ACNGT	2 cut(s)	315, 441
TaiI	ACGT	1 cut(s)	331
TaqI	TCGA	2 cut(s)	206, 486
TasI	AATT	4 cut(s)	102, 359, 450, 524
TatI	WGTACW	1 cut(s)	372
TfiI	GAWTC	2 cut(s)	241, 557
Tru1I	TTAA	2 cut(s)	464, 568
Tru9I	TTAA	2 cut(s)	464, 568
TseI	GCWGC	3 cut(s)	137, 493, 551
VpaK11BI	GGWCC	1 cut(s)	30
XapI	RAATTY	1 cut(s)	359
XceI	RCATGY	1 cut(s)	516
XmnI	GAANNNNTTC	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.