Rh1CG107600

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0007544
Physical Location & Seq
Forward (+)
21851784 .. 21856423
4640 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG107600.1

Sequence Viewer

Length: 576 bp
ATGGTGGAAAATTTGGCGAAACAAGTAAATGATGTCTCGATGAATTTGGAGAAGGCAGAAGAGAGGGCCAATGAAATAAGAGCTCTGTTAGCTGGGCTTAATGGCAGTAGTCCAGGAGGAGGGGATGGGGCGGCTGCCCTCCTTGTAGACTTTAAGAATTTGATCGAAGCTCAAGGCGTTAAAACTGAAGGACCAGCTGCAACAAGGGGGGAAAGGAAAGCAAAGGAGTGTTCTAGTTTATGTGAGATACAAGTGGCTTCTGCTGTCACACCTTCATCAACCTCTGGTAAAGGAGCACAAGTTGGCTGCAGGATTGTGACCAAAGCTGCAAATCAGACTACATTGAATGTTAAATGGAGACCACCTACTGTACCAAATTTGAAGTTGAATGTGGATGCAGCGGTGGATGGTAAGAATAAGAAGTCCGGTCTTGGTATGGTGGTTCGGGATGGAGAGGCGAATTTGAAAGGTGCTGCTCAAGTGGTAATCCCTGGATTCCCATCTGTTGTTGCAATTGAAGCTTTGGCTGTTTATCATGGCTTAAAGATGTGTCTAGAAGAAGCTACAAGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

191

Amino Acids

19.77

Weight (kDa)

8.67

Isoelectric Point (pI)

27.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 147
AciI CCGC 2 cut(s) 131, 401
AcsI RAATTY 5 cut(s) 10, 43, 157, 376, 460
AcuI CTGAAG 1 cut(s) 207
AfaI GTAC 1 cut(s) 372
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 5 cut(s) 346, 382, 388, 466, 518
AjnI CCWGG 2 cut(s) 112, 490
AluBI AGCT 7 cut(s) 83, 92, 170, 197, 326, 521, 563
AluI AGCT 7 cut(s) 83, 92, 170, 197, 326, 521, 563
Alw21I GWGCWC 2 cut(s) 85, 298
Alw26I GTCTC 2 cut(s) 40, 352
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 6 cut(s) 134, 197, 306, 326, 398, 473
ApoI RAATTY 5 cut(s) 10, 43, 157, 376, 460
AspS9I GGNCC 2 cut(s) 66, 191
AvaII GGWCC 1 cut(s) 191
BanII GRGCYC 1 cut(s) 85
Bbv12I GWGCWC 2 cut(s) 85, 298
BbvI GCAGC 6 cut(s) 121, 184, 293, 313, 410, 460
BccI CCATC 4 cut(s) 119, 401, 443, 508
BciT130I CCWGG 2 cut(s) 114, 492
BcoDI GTCTC 2 cut(s) 40, 352
BfaI CTAG 2 cut(s) 234, 554
BfmI CTRYAG 1 cut(s) 307
BisI GCNGC 7 cut(s) 132, 135, 198, 307, 327, 399, 474
BlsI GCNGC 7 cut(s) 133, 136, 199, 308, 328, 400, 475
Bme1390I CCNGG 2 cut(s) 114, 492
Bme18I GGWCC 1 cut(s) 191
BmgT120I GGNCC 2 cut(s) 66, 191
BmrFI CCNGG 2 cut(s) 114, 492
BmsI GCATC 1 cut(s) 385
BpuEI CTTGAG 2 cut(s) 156, 462
BsaBI GATNNNNATC 1 cut(s) 499
BsaI GGTCTC 1 cut(s) 352
BsaJI CCNNGG 1 cut(s) 490
BsaWI WCCGGW 1 cut(s) 425
BsaXI ACNNNNNCTCC 2 cut(s) 285, 315
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse8I GATNNNNATC 1 cut(s) 499
BseBI CCWGG 2 cut(s) 114, 492
BseDI CCNNGG 1 cut(s) 490
BseGI GGATG 4 cut(s) 130, 400, 412, 454
BseJI GATNNNNATC 1 cut(s) 499
BseLI CCNNNNNNNGG 1 cut(s) 119
BseRI GAGGAG 1 cut(s) 132
BseXI GCAGC 6 cut(s) 121, 184, 293, 313, 410, 460
BseYI CCCAGC 1 cut(s) 92
BshFI GGCC 1 cut(s) 68
BsiHKAI GWGCWC 2 cut(s) 85, 298
BsiSI CCGG 1 cut(s) 426
BslI CCNNNNNNNGG 1 cut(s) 119
BsmAI GTCTC 2 cut(s) 40, 352
BsnI GGCC 1 cut(s) 68
Bso31I GGTCTC 1 cut(s) 352
Bsp1286I GDGCHC 2 cut(s) 85, 298
Bsp143I GATC 1 cut(s) 162
BspACI CCGC 2 cut(s) 131, 401
BspANI GGCC 1 cut(s) 68
BspMAI CTGCAG 1 cut(s) 311
BspTNI GGTCTC 1 cut(s) 352
BssECI CCNNGG 1 cut(s) 490
BssMI GATC 1 cut(s) 162
Bst2UI CCWGG 2 cut(s) 114, 492
Bst4CI ACNGT 1 cut(s) 370
Bst6I CTCTTC 1 cut(s) 54
BstF5I GGATG 4 cut(s) 130, 400, 412, 454
BstKTI GATC 1 cut(s) 165
BstMAI GTCTC 2 cut(s) 40, 352
BstMBI GATC 1 cut(s) 162
BstMWI GCNNNNNNNGC 2 cut(s) 89, 518
BstNI CCWGG 2 cut(s) 114, 492
BstSCI CCNGG 2 cut(s) 112, 490
BstSFI CTRYAG 1 cut(s) 307
BstV1I GCAGC 6 cut(s) 121, 184, 293, 313, 410, 460
BsuRI GGCC 1 cut(s) 68
BtsCI GGATG 4 cut(s) 130, 400, 412, 454
Cfr13I GGNCC 2 cut(s) 66, 191
Csp6I GTAC 1 cut(s) 371
CviAII CATG 1 cut(s) 536
CviQI GTAC 1 cut(s) 371
DpnI GATC 1 cut(s) 164
DpnII GATC 1 cut(s) 162
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Ecl136II GAGCTC 1 cut(s) 83
Eco24I GRGCYC 1 cut(s) 85
Eco31I GGTCTC 1 cut(s) 352
Eco47I GGWCC 1 cut(s) 191
Eco53kI GAGCTC 1 cut(s) 83
Eco57I CTGAAG 1 cut(s) 207
EcoICRI GAGCTC 1 cut(s) 83
EcoRII CCWGG 2 cut(s) 112, 490
EcoT38I GRGCYC 1 cut(s) 85
FaeI CATG 1 cut(s) 539
FaiI YATR 3 cut(s) 241, 437, 537
FatI CATG 1 cut(s) 535
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 7 cut(s) 132, 135, 198, 307, 327, 399, 474
FokI GGATG 4 cut(s) 137, 407, 419, 461
FriOI GRGCYC 1 cut(s) 85
Fsp4HI GCNGC 7 cut(s) 132, 135, 198, 307, 327, 399, 474
FspBI CTAG 2 cut(s) 234, 554
GluI GCNGC 7 cut(s) 132, 135, 198, 307, 327, 399, 474
GsaI CCCAGC 1 cut(s) 96
HaeIII GGCC 1 cut(s) 68
HapII CCGG 1 cut(s) 426
Hin1II CATG 1 cut(s) 539
HindIII AAGCTT 1 cut(s) 519
HinfI GANTC 1 cut(s) 495
HpaII CCGG 1 cut(s) 426
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 1 cut(s) 336
Hpy188III TCNNGA 3 cut(s) 37, 446, 554
Hpy8I GTNNAC 1 cut(s) 148
HpyAV CCTTC 3 cut(s) 46, 182, 282
HpyCH4III ACNGT 1 cut(s) 370
HpyCH4V TGCA 5 cut(s) 200, 309, 329, 398, 512
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 518
Hsp92II CATG 1 cut(s) 539
Kzo9I GATC 1 cut(s) 162
LmnI GCTCC 1 cut(s) 293
LpnPI CCDG 9 cut(s) 78, 99, 126, 207, 270, 295, 439, 477, 504
Lsp1109I GCAGC 6 cut(s) 121, 184, 293, 313, 410, 460
LweI GCATC 1 cut(s) 385
MaeI CTAG 2 cut(s) 234, 554
MaeIII GTNAC 2 cut(s) 265, 316
MalI GATC 1 cut(s) 164
MboI GATC 1 cut(s) 162
MboII GAAGA 2 cut(s) 71, 569
MfeI CAATTG 1 cut(s) 513
MhlI GDGCHC 2 cut(s) 85, 298
MluCI AATT 6 cut(s) 10, 43, 157, 376, 460, 513
MnlI CCTC 6 cut(s) 57, 110, 113, 149, 292, 448
MseI TTAA 5 cut(s) 99, 153, 180, 351, 542
MspA1I CMGCKG 2 cut(s) 197, 401
MspI CCGG 1 cut(s) 426
MspR9I CCNGG 2 cut(s) 114, 492
MunI CAATTG 1 cut(s) 513
MvaI CCWGG 2 cut(s) 114, 492
MwoI GCNNNNNNNGC 2 cut(s) 89, 518
NdeII GATC 1 cut(s) 162
NlaIII CATG 1 cut(s) 539
NmuCI GTSAC 2 cut(s) 265, 316
PfeI GAWTC 1 cut(s) 495
PfoI TCCNGGA 1 cut(s) 112
PkrI GCNGC 7 cut(s) 133, 136, 199, 308, 328, 400, 475
Psp124BI GAGCTC 1 cut(s) 85
Psp6I CCWGG 2 cut(s) 112, 490
PspFI CCCAGC 1 cut(s) 92
PspGI CCWGG 2 cut(s) 112, 490
PspPI GGNCC 2 cut(s) 66, 191
PstI CTGCAG 1 cut(s) 311
PvuII CAGCTG 1 cut(s) 197
RsaI GTAC 1 cut(s) 372
RsaNI GTAC 1 cut(s) 371
SacI GAGCTC 1 cut(s) 85
SaqAI TTAA 5 cut(s) 99, 153, 180, 351, 542
SatI GCNGC 7 cut(s) 132, 135, 198, 307, 327, 399, 474
Sau3AI GATC 1 cut(s) 162
Sau96I GGNCC 2 cut(s) 66, 191
ScrFI CCNGG 2 cut(s) 114, 492
SduI GDGCHC 2 cut(s) 85, 298
SfaNI GCATC 1 cut(s) 385
SfcI CTRYAG 1 cut(s) 307
SinI GGWCC 1 cut(s) 191
SmlI CTYRAG 2 cut(s) 171, 477
SmoI CTYRAG 2 cut(s) 171, 477
Sse9I AATT 6 cut(s) 10, 43, 157, 376, 460, 513
SsiI CCGC 2 cut(s) 131, 401
SspMI CTAG 2 cut(s) 234, 554
SstI GAGCTC 1 cut(s) 85
StyD4I CCNGG 2 cut(s) 112, 490
TaaI ACNGT 1 cut(s) 370
TaqI TCGA 2 cut(s) 38, 165
TasI AATT 6 cut(s) 10, 43, 157, 376, 460, 513
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 1 cut(s) 495
Tru1I TTAA 5 cut(s) 99, 153, 180, 351, 542
Tru9I TTAA 5 cut(s) 99, 153, 180, 351, 542
TseFI GTSAC 2 cut(s) 265, 316
TseI GCWGC 6 cut(s) 134, 197, 306, 326, 398, 473
Tsp45I GTSAC 2 cut(s) 265, 316
TspDTI ATGAA 3 cut(s) 56, 87, 264
VpaK11BI GGWCC 1 cut(s) 191
XapI RAATTY 5 cut(s) 10, 43, 157, 376, 460
XbaI TCTAGA 1 cut(s) 553
XmiI GTMKAC 1 cut(s) 147
XspI CTAG 2 cut(s) 234, 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.