Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0007544

Physical Location & Seq

Genomic Coordinates Reverse (-)

39564363 .. 39565194

Gene Structure 832 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029499

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGACTTCTGTCATTTTGAACTTCATTGGGGGAGTGCCGTTTCAGGCTTTATATGTAGCGGTTAAGGCCGCCATTAAGAGCACTCATCGGTTCAAAGCGGAACTACAAGATCTTGAATTTGCATTGCGTTGCTTCAGACCGGAAGCCCTCCGGGAGATGGAGGCCATCAGTAGCAGAATAAATCTCTCCACCGAGACGGTAAGAGATTTGGAGAAGAAACTAATTGAAGGTAGAGCTATAGTTGAGAAGCTGTCCAAGCTCAGCTGTTGGAATTTTCGGATTATAAGTGACTGTTGTGGAGATAGCTATGCAGAGAAGCTTAATGGCATCACTATGTCTCTTCGGAGGTTGGCTTTGATGCTAGGGATGGATGGGCTGATACACGTGATGGAGATCTTGGAGTTAACAAGGAGATCCAAGGACGATGATGATGACGACAGAAAACAATTGAACAATGTGCTGAGGATGGTGGAAAATCTGGCAAAACAAGTAAATGATATCTCGATGAAGTTGGAGAAGGCAGAAGAGAGGGCCAATGAAATAAGAGCTCTGTTAGCTGGGCTTTATGGCAGTAGTCTAGGAGGAGGGGATAGGGCTGCCCTCCTTGTAGACTTTAAGAATTTGATCGAAGCTCAAGGTGGTGAACACTTTTTCAACATCTTCTCTCAGCTTCTAGATAAAATTTTGAAGCTTGAGCAGAATGCCTTTACATTGACAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002237 GO:0002239 GO:0002682 GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009889 GO:0009987 GO:0010033 GO:0010112 GO:0010224 GO:0010337 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032350 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0043902 GO:0044424 GO:0044464 GO:0045088 GO:0046885 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071216 GO:0071219 GO:0080090 GO:0080134 GO:0080142 GO:0097159 GO:0098542 GO:0140110 GO:1900424 GO:1900426 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Calmodulin_bind

Protein Analysis

241

Amino Acids

27.1

Weight (kDa)

5.8

Isoelectric Point (pI)

41.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	11 - 116	1.2e-07	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007544)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0337761 RchiOBHm_Chr1g0337831
rosa_laevigata	RLG00000015780 RLG00000029499 RLG00000029520 RLG00000029773
rosa_multiflora	Rmu_sc0002899.1_g000001 Rmu_sc0003367.1_g000022 Rmu_sc0006537.1_g000039
rosa_roxburghii	Rroxscaffold_1G00022150 Rroxscaffold_4G00328560
rosa_samantha	Rh1AG111900 Rh1CG099600 Rh1CG107600 Rh1CG108700 Rh1DG106800 Rh1DG115000 Rh1DG116400 Rh2AG020700 Rh2AG020800 Rh2CG021700 Rh2CG158100 Rh2DG021400 Rh2DG021500 Rh7AG065400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	284
AccI	GTMKAC	1 cut(s)	609
AciI	CCGC	3 cut(s)	59, 69, 98
AclWI	GGATC	1 cut(s)	408
AcsI	RAATTY	4 cut(s)	116, 271, 619, 681
AcuI	CTGAAG	1 cut(s)	118
AcvI	CACGTG	1 cut(s)	385
AfiI	CCNNNNNNNGG	1 cut(s)	157
AflIII	ACRYGT	1 cut(s)	382
AgsI	TTSAA	7 cut(s)	19, 94, 116, 227, 451, 655, 688
Alw21I	GWGCWC	2 cut(s)	83, 550
Alw26I	GTCTC	2 cut(s)	188, 342
AlwI	GGATC	1 cut(s)	408
AoxI	GGCC	3 cut(s)	66, 162, 531
ApeKI	GCWGC	1 cut(s)	596
ApoI	RAATTY	4 cut(s)	116, 271, 619, 681
AspS9I	GGNCC	1 cut(s)	531
AsuC2I	CCSGG	1 cut(s)	152
AsuHPI	GGTGA	1 cut(s)	653
BanII	GRGCYC	1 cut(s)	550
BbrPI	CACGTG	1 cut(s)	385
Bbv12I	GWGCWC	2 cut(s)	83, 550
BbvCI	CCTCAGC	1 cut(s)	461
BbvI	GCAGC	1 cut(s)	583
BccI	CCATC	6 cut(s)	151, 173, 361, 365, 382, 460
BceAI	ACGGC	1 cut(s)	22
BcnI	CCSGG	1 cut(s)	152
BcoDI	GTCTC	2 cut(s)	188, 342
BfaI	CTAG	3 cut(s)	362, 578, 674
BfmI	CTRYAG	1 cut(s)	237
BglII	AGATCT	2 cut(s)	109, 393
BisI	GCNGC	2 cut(s)	69, 597
BlpI	GCTNAGC	1 cut(s)	260
BlsI	GCNGC	2 cut(s)	70, 598
Bme1390I	CCNGG	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	531
BmrFI	CCNGG	1 cut(s)	152
BmsI	GCATC	2 cut(s)	336, 348
BoxI	GACNNNNGTC	1 cut(s)	8
Bpu10I	CCTNAGC	1 cut(s)	461
Bpu1102I	GCTNAGC	1 cut(s)	260
BpuEI	CTTGAG	2 cut(s)	618, 713
BpuMI	CCSGG	1 cut(s)	152
BsaAI	YACGTR	1 cut(s)	385
BsaBI	GATNNNNATC	1 cut(s)	392
BsaJI	CCNNGG	1 cut(s)	417
BsaWI	WCCGGW	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
Bse3DI	GCAATG	1 cut(s)	122
Bse8I	GATNNNNATC	1 cut(s)	392
BseDI	CCNNGG	1 cut(s)	417
BseGI	GGATG	3 cut(s)	372, 376, 471
BseJI	GATNNNNATC	1 cut(s)	392
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseMI	GCAATG	1 cut(s)	122
BseMII	CTCAG	3 cut(s)	274, 452, 680
BseRI	GAGGAG	1 cut(s)	597
BseXI	GCAGC	1 cut(s)	583
BseYI	CCCAGC	1 cut(s)	557
BshFI	GGCC	3 cut(s)	68, 164, 533
BsiHKAI	GWGCWC	2 cut(s)	83, 550
BsiSI	CCGG	2 cut(s)	140, 151
BslI	CCNNNNNNNGG	1 cut(s)	157
BsmAI	GTCTC	2 cut(s)	188, 342
BsmBI	CGTCTC	1 cut(s)	188
BsmI	GAATGC	1 cut(s)	706
BsnI	GGCC	3 cut(s)	68, 164, 533
Bsp1286I	GDGCHC	2 cut(s)	83, 550
Bsp143I	GATC	4 cut(s)	109, 393, 413, 624
Bsp1720I	GCTNAGC	1 cut(s)	260
BspACI	CCGC	3 cut(s)	59, 69, 98
BspANI	GGCC	3 cut(s)	68, 164, 533
BspCNI	CTCAG	3 cut(s)	273, 453, 679
BspPI	GGATC	1 cut(s)	408
BsrDI	GCAATG	1 cut(s)	122
BssECI	CCNNGG	1 cut(s)	417
BssMI	GATC	4 cut(s)	109, 393, 413, 624
BssT1I	CCWWGG	1 cut(s)	417
Bst4CI	ACNGT	2 cut(s)	199, 293
Bst6I	CTCTTC	2 cut(s)	345, 519
BstBAI	YACGTR	1 cut(s)	385
BstDEI	CTNAG	3 cut(s)	260, 461, 666
BstF5I	GGATG	3 cut(s)	372, 376, 471
BstKTI	GATC	4 cut(s)	112, 396, 416, 627
BstMAI	GTCTC	2 cut(s)	188, 342
BstMBI	GATC	4 cut(s)	109, 393, 413, 624
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 256, 554
BstPAI	GACNNNNGTC	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	150
BstSFI	CTRYAG	1 cut(s)	237
BstV1I	GCAGC	1 cut(s)	583
BstX2I	RGATCY	3 cut(s)	109, 393, 413
BstYI	RGATCY	3 cut(s)	109, 393, 413
BsuRI	GGCC	3 cut(s)	68, 164, 533
BtsCI	GGATG	3 cut(s)	372, 376, 471
Cfr13I	GGNCC	1 cut(s)	531
DdeI	CTNAG	3 cut(s)	260, 461, 666
DpnI	GATC	4 cut(s)	111, 395, 415, 626
DpnII	GATC	4 cut(s)	109, 393, 413, 624
Eam1104I	CTCTTC	2 cut(s)	345, 519
EarI	CTCTTC	2 cut(s)	345, 519
Ecl136II	GAGCTC	1 cut(s)	548
Eco130I	CCWWGG	1 cut(s)	417
Eco24I	GRGCYC	1 cut(s)	550
Eco32I	GATATC	1 cut(s)	499
Eco53kI	GAGCTC	1 cut(s)	548
Eco57I	CTGAAG	1 cut(s)	118
Eco72I	CACGTG	1 cut(s)	385
EcoICRI	GAGCTC	1 cut(s)	548
EcoRV	GATATC	1 cut(s)	499
EcoT14I	CCWWGG	1 cut(s)	417
EcoT38I	GRGCYC	1 cut(s)	550
ErhI	CCWWGG	1 cut(s)	417
Esp3I	CGTCTC	1 cut(s)	188
FaiI	YATR	7 cut(s)	52, 54, 239, 284, 309, 335, 567
FblI	GTMKAC	1 cut(s)	609
Fnu4HI	GCNGC	2 cut(s)	69, 597
FokI	GGATG	3 cut(s)	379, 383, 478
FriOI	GRGCYC	1 cut(s)	550
Fsp4HI	GCNGC	2 cut(s)	69, 597
FspBI	CTAG	3 cut(s)	362, 578, 674
GluI	GCNGC	2 cut(s)	69, 597
GsaI	CCCAGC	1 cut(s)	561
HaeIII	GGCC	3 cut(s)	68, 164, 533
HapII	CCGG	2 cut(s)	140, 151
HincII	GTYRAC	1 cut(s)	405
HindII	GTYRAC	1 cut(s)	405
HindIII	AAGCTT	2 cut(s)	317, 689
HpaI	GTTAAC	1 cut(s)	405
HpaII	CCGG	2 cut(s)	140, 151
HphI	GGTGA	1 cut(s)	653
Hpy166II	GTNNAC	3 cut(s)	405, 610, 644
Hpy188I	TCNGA	3 cut(s)	137, 279, 345
Hpy188III	TCNNGA	3 cut(s)	113, 502, 674
Hpy8I	GTNNAC	3 cut(s)	405, 610, 644
HpyAV	CCTTC	2 cut(s)	221, 511
HpyCH4III	ACNGT	2 cut(s)	199, 293
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	2 cut(s)	122, 311
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 256, 554
HpyF3I	CTNAG	3 cut(s)	260, 461, 666
HpySE526I	ACGT	1 cut(s)	384
KspAI	GTTAAC	1 cut(s)	405
Kzo9I	GATC	4 cut(s)	109, 393, 413, 624
LpnPI	CCDG	5 cut(s)	29, 153, 164, 464, 543
Lsp1109I	GCAGC	1 cut(s)	583
LweI	GCATC	2 cut(s)	336, 348
MaeI	CTAG	3 cut(s)	362, 578, 674
MaeII	ACGT	1 cut(s)	384
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	4 cut(s)	111, 395, 415, 626
MboI	GATC	4 cut(s)	109, 393, 413, 624
MboII	GAAGA	4 cut(s)	226, 332, 536, 652
MfeI	CAATTG	1 cut(s)	446
MflI	RGATCY	3 cut(s)	109, 393, 413
MhlI	GDGCHC	2 cut(s)	83, 550
MluCI	AATT	6 cut(s)	116, 222, 271, 446, 619, 681
MmeI	TCCRAC	2 cut(s)	248, 492
MnlI	CCTC	8 cut(s)	154, 158, 339, 456, 522, 575, 578, 611
MseI	TTAA	5 cut(s)	63, 75, 321, 404, 615
MslI	CAYNNNNRTG	1 cut(s)	332
MspA1I	CMGCKG	1 cut(s)	264
MspI	CCGG	2 cut(s)	140, 151
MspR9I	CCNGG	1 cut(s)	152
MunI	CAATTG	1 cut(s)	446
Mva1269I	GAATGC	1 cut(s)	706
MwoI	GCNNNNNNNGC	3 cut(s)	65, 256, 554
NciI	CCSGG	1 cut(s)	152
NdeII	GATC	4 cut(s)	109, 393, 413, 624
NmuCI	GTSAC	1 cut(s)	287
PctI	GAATGC	1 cut(s)	706
PfoI	TCCNGGA	1 cut(s)	150
PkrI	GCNGC	2 cut(s)	70, 598
PmaCI	CACGTG	1 cut(s)	385
PmlI	CACGTG	1 cut(s)	385
Ppu21I	YACGTR	1 cut(s)	385
PshAI	GACNNNNGTC	1 cut(s)	8
PsiI	TTATAA	1 cut(s)	284
Psp124BI	GAGCTC	1 cut(s)	550
PspCI	CACGTG	1 cut(s)	385
PspFI	CCCAGC	1 cut(s)	557
PspPI	GGNCC	1 cut(s)	531
PsuI	RGATCY	3 cut(s)	109, 393, 413
PvuII	CAGCTG	1 cut(s)	264
RseI	CAYNNNNRTG	1 cut(s)	332
SacI	GAGCTC	1 cut(s)	550
SaqAI	TTAA	5 cut(s)	63, 75, 321, 404, 615
SatI	GCNGC	2 cut(s)	69, 597
Sau3AI	GATC	4 cut(s)	109, 393, 413, 624
Sau96I	GGNCC	1 cut(s)	531
ScrFI	CCNGG	1 cut(s)	152
SduI	GDGCHC	2 cut(s)	83, 550
SfaNI	GCATC	2 cut(s)	336, 348
SfcI	CTRYAG	1 cut(s)	237
SmiMI	CAYNNNNRTG	1 cut(s)	332
SmlI	CTYRAG	2 cut(s)	633, 692
SmoI	CTYRAG	2 cut(s)	633, 692
Sse9I	AATT	6 cut(s)	116, 222, 271, 446, 619, 681
SsiI	CCGC	3 cut(s)	59, 69, 98
SspMI	CTAG	3 cut(s)	362, 578, 674
SstI	GAGCTC	1 cut(s)	550
StyD4I	CCNGG	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	2 cut(s)	199, 293
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	2 cut(s)	503, 627
TasI	AATT	6 cut(s)	116, 222, 271, 446, 619, 681
TauI	GCSGC	1 cut(s)	71
Tru1I	TTAA	5 cut(s)	63, 75, 321, 404, 615
Tru9I	TTAA	5 cut(s)	63, 75, 321, 404, 615
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	1 cut(s)	596
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	3 cut(s)	13, 521, 552
XapI	RAATTY	4 cut(s)	116, 271, 619, 681
XbaI	TCTAGA	1 cut(s)	673
XmiI	GTMKAC	1 cut(s)	609
XspI	CTAG	3 cut(s)	362, 578, 674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.