Rh1CG108700

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0007544
Physical Location & Seq
Forward (+)
21955837 .. 21957753
1917 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG108700.1

Sequence Viewer

Length: 417 bp
ATGCTAGGGATGGATGGGCTGATGCACGTGATGCAGATCTTTGAGTTTACAAGGAGATCCAAGGCCGATGATGAGGAGGACAGAAAACAATTGAACAATGTGCTGAGGATGGTGAAAAATCTGGCGAACCAAGGAGCACAAGTTGGCCGCAAGATTGTGACCAAAGCTGCAAATCAGACTACACTGAATGTTAAATGGAGACCACCTACTGTACCAAATTTGAAGTTGAATGTGGATGCAGCGGTGGATGGTAAGAATAAGAAGTCCGGTCTTGGTATGGTGGTTCGGGATGGAGAGGGGAATTTGAAAGGTGCTGCTCAAGTGCTAATCCCTGGAAACCCATCTGTTGTTGCAATTGAAGCTTTGGCTGTTTATTATGGCTTAAAGATGTGTCTAGAAGAAGCTACAAACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

138

Amino Acids

15.08

Weight (kDa)

9.59

Isoelectric Point (pI)

29.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 77 - 134 6.5e-06 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 148, 242
AclWI GGATC 1 cut(s) 51
AcoI YGGCCR 1 cut(s) 145
AcsI RAATTY 2 cut(s) 217, 301
AcvI CACGTG 1 cut(s) 28
AfaI GTAC 1 cut(s) 213
AgsI TTSAA 5 cut(s) 94, 223, 229, 307, 359
AjnI CCWGG 1 cut(s) 331
AluBI AGCT 3 cut(s) 167, 362, 404
AluI AGCT 3 cut(s) 167, 362, 404
Alw21I GWGCWC 1 cut(s) 139
Alw26I GTCTC 1 cut(s) 193
AlwI GGATC 1 cut(s) 51
AoxI GGCC 2 cut(s) 63, 145
ApeKI GCWGC 3 cut(s) 167, 239, 314
ApoI RAATTY 2 cut(s) 217, 301
AsuHPI GGTGA 1 cut(s) 124
BbrPI CACGTG 1 cut(s) 28
Bbv12I GWGCWC 1 cut(s) 139
BbvCI CCTCAGC 1 cut(s) 104
BbvI GCAGC 3 cut(s) 154, 251, 301
BccI CCATC 6 cut(s) 4, 8, 103, 242, 284, 349
BciT130I CCWGG 1 cut(s) 333
BcoDI GTCTC 1 cut(s) 193
BfaI CTAG 2 cut(s) 5, 395
BglII AGATCT 1 cut(s) 36
BisI GCNGC 4 cut(s) 148, 168, 240, 315
BlsI GCNGC 4 cut(s) 149, 169, 241, 316
Bme1390I CCNGG 1 cut(s) 333
BmrFI CCNGG 1 cut(s) 333
BmsI GCATC 3 cut(s) 12, 21, 226
Bpu10I CCTNAGC 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 303
BsaAI YACGTR 1 cut(s) 28
BsaBI GATNNNNATC 1 cut(s) 35
BsaI GGTCTC 1 cut(s) 193
BsaJI CCNNGG 3 cut(s) 60, 130, 331
BsaWI WCCGGW 1 cut(s) 266
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
Bse8I GATNNNNATC 1 cut(s) 35
BseBI CCWGG 1 cut(s) 333
BseDI CCNNGG 3 cut(s) 60, 130, 331
BseGI GGATG 6 cut(s) 15, 19, 114, 241, 253, 295
BseJI GATNNNNATC 1 cut(s) 35
BseMII CTCAG 1 cut(s) 95
BseRI GAGGAG 1 cut(s) 89
BseXI GCAGC 3 cut(s) 154, 251, 301
BshFI GGCC 2 cut(s) 65, 147
BsiHKAI GWGCWC 1 cut(s) 139
BsiSI CCGG 1 cut(s) 267
BsmAI GTCTC 1 cut(s) 193
BsnI GGCC 2 cut(s) 65, 147
Bso31I GGTCTC 1 cut(s) 193
Bsp1286I GDGCHC 1 cut(s) 139
Bsp143I GATC 2 cut(s) 36, 56
BspACI CCGC 2 cut(s) 148, 242
BspANI GGCC 2 cut(s) 65, 147
BspCNI CTCAG 1 cut(s) 96
BspPI GGATC 1 cut(s) 51
BspTNI GGTCTC 1 cut(s) 193
BssECI CCNNGG 3 cut(s) 60, 130, 331
BssMI GATC 2 cut(s) 36, 56
BssT1I CCWWGG 2 cut(s) 60, 130
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 1 cut(s) 211
BstAPI GCANNNNNTGC 1 cut(s) 31
BstBAI YACGTR 1 cut(s) 28
BstDEI CTNAG 1 cut(s) 104
BstF5I GGATG 6 cut(s) 15, 19, 114, 241, 253, 295
BstKTI GATC 2 cut(s) 39, 59
BstMAI GTCTC 1 cut(s) 193
BstMBI GATC 2 cut(s) 36, 56
BstMWI GCNNNNNNNGC 2 cut(s) 31, 359
BstNI CCWGG 1 cut(s) 333
BstSCI CCNGG 1 cut(s) 331
BstV1I GCAGC 3 cut(s) 154, 251, 301
BstX2I RGATCY 2 cut(s) 36, 56
BstYI RGATCY 2 cut(s) 36, 56
BsuRI GGCC 2 cut(s) 65, 147
BtsCI GGATG 6 cut(s) 15, 19, 114, 241, 253, 295
BtsIMutI CAGTG 1 cut(s) 182
Csp6I GTAC 1 cut(s) 212
CviJI RGCY 8 cut(s) 19, 65, 147, 167, 362, 368, 381, 404
CviKI_1 RGCY 8 cut(s) 19, 65, 147, 167, 362, 368, 381, 404
CviQI GTAC 1 cut(s) 212
DdeI CTNAG 1 cut(s) 104
DpnI GATC 2 cut(s) 38, 58
DpnII GATC 2 cut(s) 36, 56
EaeI YGGCCR 1 cut(s) 145
Eco130I CCWWGG 2 cut(s) 60, 130
Eco31I GGTCTC 1 cut(s) 193
Eco72I CACGTG 1 cut(s) 28
EcoRII CCWGG 1 cut(s) 331
EcoT14I CCWWGG 2 cut(s) 60, 130
ErhI CCWWGG 2 cut(s) 60, 130
FaiI YATR 2 cut(s) 278, 378
Fnu4HI GCNGC 4 cut(s) 148, 168, 240, 315
FokI GGATG 6 cut(s) 22, 26, 121, 248, 260, 302
Fsp4HI GCNGC 4 cut(s) 148, 168, 240, 315
FspBI CTAG 2 cut(s) 5, 395
GluI GCNGC 4 cut(s) 148, 168, 240, 315
HaeIII GGCC 2 cut(s) 65, 147
HapII CCGG 1 cut(s) 267
HindIII AAGCTT 1 cut(s) 360
HpaII CCGG 1 cut(s) 267
HphI GGTGA 1 cut(s) 124
Hpy166II GTNNAC 1 cut(s) 48
Hpy188I TCNGA 1 cut(s) 177
Hpy188III TCNNGA 2 cut(s) 287, 395
Hpy8I GTNNAC 1 cut(s) 48
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 5 cut(s) 25, 34, 170, 239, 353
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 359
HpyF3I CTNAG 1 cut(s) 104
HpySE526I ACGT 1 cut(s) 27
Kzo9I GATC 2 cut(s) 36, 56
LmnI GCTCC 1 cut(s) 134
LpnPI CCDG 4 cut(s) 107, 280, 318, 345
Lsp1109I GCAGC 3 cut(s) 154, 251, 301
LweI GCATC 3 cut(s) 12, 21, 226
MaeI CTAG 2 cut(s) 5, 395
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 1 cut(s) 157
MalI GATC 2 cut(s) 38, 58
MboI GATC 2 cut(s) 36, 56
MboII GAAGA 1 cut(s) 410
MfeI CAATTG 2 cut(s) 89, 354
MflI RGATCY 2 cut(s) 36, 56
MhlI GDGCHC 1 cut(s) 139
MluCI AATT 4 cut(s) 89, 217, 301, 354
MnlI CCTC 4 cut(s) 67, 70, 99, 289
MseI TTAA 2 cut(s) 192, 383
MspA1I CMGCKG 1 cut(s) 242
MspI CCGG 1 cut(s) 267
MspR9I CCNGG 1 cut(s) 333
MunI CAATTG 2 cut(s) 89, 354
MvaI CCWGG 1 cut(s) 333
MwoI GCNNNNNNNGC 2 cut(s) 31, 359
NdeII GATC 2 cut(s) 36, 56
NmuCI GTSAC 1 cut(s) 157
PkrI GCNGC 4 cut(s) 149, 169, 241, 316
PmaCI CACGTG 1 cut(s) 28
PmlI CACGTG 1 cut(s) 28
Ppu21I YACGTR 1 cut(s) 28
Psp6I CCWGG 1 cut(s) 331
PspCI CACGTG 1 cut(s) 28
PspGI CCWGG 1 cut(s) 331
PsuI RGATCY 2 cut(s) 36, 56
RsaI GTAC 1 cut(s) 213
RsaNI GTAC 1 cut(s) 212
SaqAI TTAA 2 cut(s) 192, 383
SatI GCNGC 4 cut(s) 148, 168, 240, 315
Sau3AI GATC 2 cut(s) 36, 56
ScrFI CCNGG 1 cut(s) 333
SduI GDGCHC 1 cut(s) 139
SetI ASST 6 cut(s) 30, 169, 208, 313, 364, 406
SfaNI GCATC 3 cut(s) 12, 21, 226
SmlI CTYRAG 1 cut(s) 318
SmoI CTYRAG 1 cut(s) 318
Sse9I AATT 4 cut(s) 89, 217, 301, 354
SsiI CCGC 2 cut(s) 148, 242
SspMI CTAG 2 cut(s) 5, 395
StyD4I CCNGG 1 cut(s) 331
StyI CCWWGG 2 cut(s) 60, 130
TaaI ACNGT 1 cut(s) 211
TaiI ACGT 1 cut(s) 30
TasI AATT 4 cut(s) 89, 217, 301, 354
TauI GCSGC 1 cut(s) 150
Tru1I TTAA 2 cut(s) 192, 383
Tru9I TTAA 2 cut(s) 192, 383
TscAI CASTG 1 cut(s) 189
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 3 cut(s) 167, 239, 314
Tsp45I GTSAC 1 cut(s) 157
TspRI CASTG 1 cut(s) 189
XapI RAATTY 2 cut(s) 217, 301
XbaI TCTAGA 1 cut(s) 394
XspI CTAG 2 cut(s) 5, 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.