Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002899.1

Orthogroup ID

OG0007544

Physical Location & Seq

Genomic Coordinates Reverse (-)

1966 .. 4317

Gene Structure 2352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002899.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atgaaggatattaatgcaagggtagagaggattgaatctaagaatagctcatcagatggacttactgctgtagaaacaaagtccttgagccacgacccaaagagaaatagtccaaaggctaagagtacctgtagggaggtatctctatttggagcggaaactgatccaactgtaaaatttgtagaccctataaaagtttattctgaaaaggaactaataagagaagaggagagaatagcttctacccttgtaccagagaaagactggtcaattcggattgctgcaatgcagagaatagaagggcttgtatatggaggtatctttgccctactctacctctggccaaccgaaaaaagcggtttggttgaggtttgggccttaaaccgaaccgaaccgcaccgcgcccacccctaccactcctcacccgtggcttctgtcattttgaacttcgttgagggagtgccgtttcaggctttatatgaagcggttaaggccgccatcaagagcactcatcagttcaaagcggaactacatgatcttgaatttgcattgcgttgcttcagaccggaagccctctgggggatggacgccatcagtagcaaaataaatctctccatcgagacagtaagagatttggagaagaaactaattgaagctagagctatagatcggaagccctctgggggatggacgccatcagtagcaaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007026 GO:0007049 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009653 GO:0009826 GO:0009987 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030054 GO:0030865 GO:0031023 GO:0031109 GO:0031110 GO:0031111 GO:0031114 GO:0031122 GO:0031647 GO:0032502 GO:0032886 GO:0032989 GO:0033043 GO:0034453 GO:0034622 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043622 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046785 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050821 GO:0051010 GO:0051128 GO:0051129 GO:0051258 GO:0051302 GO:0051493 GO:0051494 GO:0051781 GO:0055044 GO:0060560 GO:0065003 GO:0065007 GO:0065008 GO:0070507 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT Vac14_Fab1_bd

Protein Analysis

236

Amino Acids

26.52

Weight (kDa)

7.77

Isoelectric Point (pI)

36.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007544)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0337761 RchiOBHm_Chr1g0337831
rosa_laevigata	RLG00000015780 RLG00000029499 RLG00000029520 RLG00000029773
rosa_multiflora	Rmu_sc0002899.1_g000001 Rmu_sc0003367.1_g000022 Rmu_sc0006537.1_g000039
rosa_roxburghii	Rroxscaffold_1G00022150 Rroxscaffold_4G00328560
rosa_samantha	Rh1AG111900 Rh1CG099600 Rh1CG107600 Rh1CG108700 Rh1DG106800 Rh1DG115000 Rh1DG116400 Rh2AG020700 Rh2AG020800 Rh2CG021700 Rh2CG158100 Rh2DG021400 Rh2DG021500 Rh7AG065400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	155
AccI	GTMKAC	1 cut(s)	183
AccII	CGCG	1 cut(s)	402
AciI	CCGC	7 cut(s)	155, 357, 395, 400, 485, 495, 524
AclWI	GGATC	1 cut(s)	158
AcoI	YGGCCR	1 cut(s)	341
AcsI	RAATTY	2 cut(s)	176, 542
AcuI	CTGAAG	1 cut(s)	544
AcyI	GRCGYC	2 cut(s)	588, 692
AfaI	GTAC	2 cut(s)	127, 252
AfiI	CCNNNNNNNGG	2 cut(s)	579, 683
AgsI	TTSAA	5 cut(s)	35, 445, 520, 542, 653
AluBI	AGCT	4 cut(s)	48, 239, 656, 662
AluI	AGCT	4 cut(s)	48, 239, 656, 662
Alw21I	GWGCWC	1 cut(s)	509
Alw26I	GTCTC	1 cut(s)	614
AlwI	GGATC	1 cut(s)	158
AoxI	GGCC	3 cut(s)	341, 375, 492
ApeKI	GCWGC	1 cut(s)	281
ApoI	RAATTY	2 cut(s)	176, 542
AseI	ATTAAT	1 cut(s)	12
Asp700I	GAANNNNTTC	1 cut(s)	238
AspLEI	GCGC	1 cut(s)	404
AspS9I	GGNCC	1 cut(s)	375
AsuHPI	GGTGA	1 cut(s)	414
BaeI	ACNNNNGTAYC	2 cut(s)	234, 267
BalI	TGGCCA	1 cut(s)	343
Bbv12I	GWGCWC	1 cut(s)	509
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	7 cut(s)	50, 506, 577, 599, 623, 681, 703
BceAI	ACGGC	1 cut(s)	448
BcoDI	GTCTC	1 cut(s)	614
BfaI	CTAG	1 cut(s)	657
BfmI	CTRYAG	3 cut(s)	69, 130, 663
BisI	GCNGC	2 cut(s)	282, 495
BlsI	GCNGC	2 cut(s)	283, 496
BmgT120I	GGNCC	1 cut(s)	375
BpuEI	CTTGAG	1 cut(s)	106
BsaHI	GRCGYC	2 cut(s)	588, 692
BsaJI	CCNNGG	1 cut(s)	426
BsaWI	WCCGGW	1 cut(s)	565
Bsc4I	CCNNNNNNNGG	2 cut(s)	579, 683
Bse1I	ACTGG	1 cut(s)	269
Bse3DI	GCAATG	2 cut(s)	291, 548
BseDI	CCNNGG	1 cut(s)	426
BseGI	GGATG	2 cut(s)	588, 692
BseLI	CCNNNNNNNGG	2 cut(s)	579, 683
BseMI	GCAATG	2 cut(s)	291, 548
BseNI	ACTGG	1 cut(s)	269
BseRI	GAGGAG	2 cut(s)	242, 409
BseXI	GCAGC	1 cut(s)	268
Bsh1236I	CGCG	1 cut(s)	402
BshFI	GGCC	3 cut(s)	343, 377, 494
BsiHKAI	GWGCWC	1 cut(s)	509
BsiSI	CCGG	1 cut(s)	566
BslI	CCNNNNNNNGG	2 cut(s)	579, 683
BsmAI	GTCTC	1 cut(s)	614
BsnI	GGCC	3 cut(s)	343, 377, 494
Bsp1286I	GDGCHC	1 cut(s)	509
Bsp143I	GATC	3 cut(s)	163, 535, 667
BspACI	CCGC	7 cut(s)	155, 357, 395, 400, 485, 495, 524
BspANI	GGCC	3 cut(s)	343, 377, 494
BspFNI	CGCG	1 cut(s)	402
BspPI	GGATC	1 cut(s)	158
BsrBI	CCGCTC	1 cut(s)	155
BsrDI	GCAATG	2 cut(s)	291, 548
BsrI	ACTGG	1 cut(s)	269
BssECI	CCNNGG	1 cut(s)	426
BssMI	GATC	3 cut(s)	163, 535, 667
BssNI	GRCGYC	2 cut(s)	588, 692
Bst4CI	ACNGT	2 cut(s)	172, 625
Bst6I	CTCTTC	1 cut(s)	219
BstACI	GRCGYC	2 cut(s)	588, 692
BstDEI	CTNAG	2 cut(s)	39, 120
BstDSI	CCRYGG	1 cut(s)	426
BstF5I	GGATG	2 cut(s)	588, 692
BstFNI	CGCG	1 cut(s)	402
BstHHI	GCGC	1 cut(s)	404
BstKTI	GATC	3 cut(s)	166, 538, 670
BstMAI	GTCTC	1 cut(s)	614
BstMBI	GATC	3 cut(s)	163, 535, 667
BstMWI	GCNNNNNNNGC	1 cut(s)	491
BstSFI	CTRYAG	3 cut(s)	69, 130, 663
BstUI	CGCG	1 cut(s)	402
BstV1I	GCAGC	1 cut(s)	268
BsuRI	GGCC	3 cut(s)	343, 377, 494
BtgI	CCRYGG	1 cut(s)	426
BtsCI	GGATG	2 cut(s)	588, 692
CfoI	GCGC	1 cut(s)	404
Cfr13I	GGNCC	1 cut(s)	375
CseI	GACGC	2 cut(s)	596, 700
Csp6I	GTAC	2 cut(s)	126, 251
CviAII	CATG	1 cut(s)	533
CviQI	GTAC	2 cut(s)	126, 251
DdeI	CTNAG	2 cut(s)	39, 120
DpnI	GATC	3 cut(s)	165, 537, 669
DpnII	GATC	3 cut(s)	163, 535, 667
EaeI	YGGCCR	1 cut(s)	341
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Eco57I	CTGAAG	1 cut(s)	544
FaeI	CATG	1 cut(s)	536
FaiI	YATR	7 cut(s)	191, 310, 312, 478, 480, 534, 665
FatI	CATG	1 cut(s)	532
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	2 cut(s)	282, 495
FokI	GGATG	2 cut(s)	595, 699
Fsp4HI	GCNGC	2 cut(s)	282, 495
FspBI	CTAG	1 cut(s)	657
GlaI	GCGC	1 cut(s)	403
GluI	GCNGC	2 cut(s)	282, 495
HaeIII	GGCC	3 cut(s)	343, 377, 494
HapII	CCGG	1 cut(s)	566
HgaI	GACGC	2 cut(s)	596, 700
HhaI	GCGC	1 cut(s)	404
Hin1I	GRCGYC	2 cut(s)	588, 692
Hin1II	CATG	1 cut(s)	536
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HinfI	GANTC	1 cut(s)	35
HpaII	CCGG	1 cut(s)	566
HphI	GGTGA	1 cut(s)	414
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	5 cut(s)	55, 205, 276, 563, 672
Hpy188III	TCNNGA	3 cut(s)	502, 539, 619
Hpy8I	GTNNAC	1 cut(s)	184
HpyAV	CCTTC	1 cut(s)	293
HpyCH4III	ACNGT	2 cut(s)	172, 625
HpyCH4V	TGCA	4 cut(s)	17, 284, 289, 548
HpyF10VI	GCNNNNNNNGC	1 cut(s)	491
HpyF3I	CTNAG	2 cut(s)	39, 120
Hsp92I	GRCGYC	2 cut(s)	588, 692
Hsp92II	CATG	1 cut(s)	536
HspAI	GCGC	1 cut(s)	402
Kzo9I	GATC	3 cut(s)	163, 535, 667
LmnI	GCTCC	1 cut(s)	152
LpnPI	CCDG	8 cut(s)	142, 250, 267, 325, 455, 562, 579, 666
Lsp1109I	GCAGC	1 cut(s)	268
MaeI	CTAG	1 cut(s)	657
MalI	GATC	3 cut(s)	165, 537, 669
MbiI	CCGCTC	1 cut(s)	155
MboI	GATC	3 cut(s)	163, 535, 667
MboII	GAAGA	2 cut(s)	236, 652
MhlI	GDGCHC	1 cut(s)	509
MlsI	TGGCCA	1 cut(s)	343
MluCI	AATT	4 cut(s)	176, 270, 542, 648
MluNI	TGGCCA	1 cut(s)	343
MmeI	TCCRAC	1 cut(s)	191
Mox20I	TGGCCA	1 cut(s)	343
MroXI	GAANNNNTTC	1 cut(s)	238
MscI	TGGCCA	1 cut(s)	343
MseI	TTAA	3 cut(s)	12, 380, 489
Msp20I	TGGCCA	1 cut(s)	343
MspI	CCGG	1 cut(s)	566
MvnI	CGCG	1 cut(s)	402
MwoI	GCNNNNNNNGC	1 cut(s)	491
NdeII	GATC	3 cut(s)	163, 535, 667
NlaIII	CATG	1 cut(s)	536
PdmI	GAANNNNTTC	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	35
PkrI	GCNGC	2 cut(s)	283, 496
PshBI	ATTAAT	1 cut(s)	12
PspPI	GGNCC	1 cut(s)	375
RsaI	GTAC	2 cut(s)	127, 252
RsaNI	GTAC	2 cut(s)	126, 251
SaqAI	TTAA	3 cut(s)	12, 380, 489
SatI	GCNGC	2 cut(s)	282, 495
Sau3AI	GATC	3 cut(s)	163, 535, 667
Sau96I	GGNCC	1 cut(s)	375
SduI	GDGCHC	1 cut(s)	509
SetI	ASST	9 cut(s)	50, 131, 141, 241, 319, 339, 372, 658, 664
SfcI	CTRYAG	3 cut(s)	69, 130, 663
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
Sse9I	AATT	4 cut(s)	176, 270, 542, 648
SsiI	CCGC	7 cut(s)	155, 357, 395, 400, 485, 495, 524
SspMI	CTAG	1 cut(s)	657
TaaI	ACNGT	2 cut(s)	172, 625
TaqI	TCGA	1 cut(s)	618
TasI	AATT	4 cut(s)	176, 270, 542, 648
TauI	GCSGC	1 cut(s)	497
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	3 cut(s)	12, 380, 489
Tru9I	TTAA	3 cut(s)	12, 380, 489
TseI	GCWGC	1 cut(s)	281
TspDTI	ATGAA	2 cut(s)	17, 495
VspI	ATTAAT	1 cut(s)	12
XapI	RAATTY	2 cut(s)	176, 542
XcmI	CCANNNNNNNNNTGG	1 cut(s)	261
XmiI	GTMKAC	1 cut(s)	183
XmnI	GAANNNNTTC	1 cut(s)	238
XspI	CTAG	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.