Rh2CG158100

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0007544
Physical Location & Seq
Forward (+)
13761355 .. 13764716
3362 bp
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UTR
Exon/CDS
Intron
Rh2CG158100.1

Sequence Viewer

Length: 390 bp
ATGCATGCCGGTTTTGAGGAAAAGCTAGTTCTGGTGAACAAATTGTCCTTCAGGCTAAAGAGTACTTTCATGGGGCAAATTCAAGGTCTGTACCTATTTTGTCTTCTGCTCCTTCAATTATGTATTCTATTAATTCCAACTCCTAGTTCGTGCACTAATGACAAGTGGATTCCACCGAAGCCTCCTTTCCTCAAACTAAATGTTGATGCTGCAATTGACCATAAGAGGAGTAAAGTTGGGTTGGGTGGAGTGGTCAGAGATGAGAATGGAAGAGTTAAAAGGGCATTTATGCATAATATGTTGGGATGCCTTTCAGCCCACTCTAGTGAAGCCTTAGCTGTTCTATTTGGTATGAGGTTTTGCTTGATGGAAGAGTTTAAGCTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

129

Amino Acids

14.52

Weight (kDa)

9.4

Isoelectric Point (pI)

50.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 67 - 126 2.2e-08 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 78
AcuI CTGAAG 1 cut(s) 34
AfaI GTAC 2 cut(s) 64, 92
AgsI TTSAA 2 cut(s) 83, 116
AjuI GAANNNNNNNTTGG 2 cut(s) 130, 162
AleI CACNNNNGTG 1 cut(s) 324
AloI GAACNNNNNNTCC 2 cut(s) 29, 61
AluBI AGCT 3 cut(s) 25, 338, 382
AluI AGCT 3 cut(s) 25, 338, 382
Alw21I GWGCWC 1 cut(s) 155
Alw44I GTGCAC 1 cut(s) 151
ApaLI GTGCAC 1 cut(s) 151
ApeKI GCWGC 1 cut(s) 209
ApoI RAATTY 1 cut(s) 78
ArsI GACNNNNNNTTYG 2 cut(s) 70, 102
AseI ATTAAT 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 46
BaeGI GKGCMC 1 cut(s) 155
BbsI GAAGAC 1 cut(s) 95
Bbv12I GWGCWC 1 cut(s) 155
BbvI GCAGC 1 cut(s) 196
BccI CCATC 1 cut(s) 361
BfaI CTAG 3 cut(s) 26, 144, 324
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
BmcAI AGTACT 1 cut(s) 64
BmsI GCATC 2 cut(s) 196, 296
BpiI GAAGAC 1 cut(s) 95
Bpu10I CCTNAGC 1 cut(s) 334
Bse118I RCCGGY 1 cut(s) 8
BseGI GGATG 1 cut(s) 311
BseRI GAGGAG 1 cut(s) 241
BseSI GKGCMC 1 cut(s) 155
BseXI GCAGC 1 cut(s) 196
BsiHKAI GWGCWC 1 cut(s) 155
BsiSI CCGG 1 cut(s) 9
Bsp1286I GDGCHC 1 cut(s) 155
BsrFI RCCGGY 1 cut(s) 8
BssAI RCCGGY 1 cut(s) 8
Bst6I CTCTTC 2 cut(s) 265, 366
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 334
BstF5I GGATG 1 cut(s) 311
BstNSI RCATGY 1 cut(s) 8
BstSLI GKGCMC 1 cut(s) 155
BstV1I GCAGC 1 cut(s) 196
BstV2I GAAGAC 1 cut(s) 95
BtsCI GGATG 1 cut(s) 311
Cac8I GCNNGC 1 cut(s) 6
Cfr10I RCCGGY 1 cut(s) 8
Csp6I GTAC 2 cut(s) 63, 91
CviAII CATG 2 cut(s) 5, 70
CviJI RGCY 7 cut(s) 25, 55, 181, 317, 332, 338, 382
CviKI_1 RGCY 7 cut(s) 25, 55, 181, 317, 332, 338, 382
CviQI GTAC 2 cut(s) 63, 91
DdeI CTNAG 1 cut(s) 334
Eam1104I CTCTTC 2 cut(s) 265, 366
EarI CTCTTC 2 cut(s) 265, 366
Eco57I CTGAAG 1 cut(s) 34
EcoT22I ATGCAT 2 cut(s) 6, 294
FaeI CATG 2 cut(s) 8, 73
FaiI YATR 8 cut(s) 6, 71, 121, 222, 290, 294, 299, 353
FatI CATG 2 cut(s) 4, 69
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 1 cut(s) 318
Fsp4HI GCNGC 1 cut(s) 210
FspBI CTAG 3 cut(s) 26, 144, 324
GluI GCNGC 1 cut(s) 210
HapII CCGG 1 cut(s) 9
Hin1II CATG 2 cut(s) 8, 73
HinfI GANTC 1 cut(s) 169
HpaII CCGG 1 cut(s) 9
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 2 cut(s) 37, 153
Hpy188I TCNGA 1 cut(s) 257
Hpy8I GTNNAC 2 cut(s) 37, 153
HpyAV CCTTC 2 cut(s) 58, 122
HpyCH4V TGCA 4 cut(s) 4, 153, 212, 292
HpyF3I CTNAG 1 cut(s) 334
Hsp92II CATG 2 cut(s) 8, 73
LmnI GCTCC 1 cut(s) 114
LpnPI CCDG 3 cut(s) 17, 22, 37
Lsp1109I GCAGC 1 cut(s) 196
LweI GCATC 2 cut(s) 196, 296
MaeI CTAG 3 cut(s) 26, 144, 324
MboII GAAGA 3 cut(s) 95, 282, 383
MfeI CAATTG 1 cut(s) 213
MhlI GDGCHC 1 cut(s) 155
MluCI AATT 5 cut(s) 41, 78, 116, 132, 213
MmeI TCCRAC 1 cut(s) 161
MnlI CCTC 5 cut(s) 10, 192, 200, 219, 348
Mph1103I ATGCAT 2 cut(s) 6, 294
MseI TTAA 3 cut(s) 131, 276, 378
MslI CAYNNNNRTG 1 cut(s) 324
MspI CCGG 1 cut(s) 9
MunI CAATTG 1 cut(s) 213
NlaIII CATG 2 cut(s) 8, 73
NsiI ATGCAT 2 cut(s) 6, 294
NspI RCATGY 1 cut(s) 8
OliI CACNNNNGTG 1 cut(s) 324
PaeI GCATGC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 169
PkrI GCNGC 1 cut(s) 211
PshBI ATTAAT 1 cut(s) 131
RsaI GTAC 2 cut(s) 64, 92
RsaNI GTAC 2 cut(s) 63, 91
RseI CAYNNNNRTG 1 cut(s) 324
SaqAI TTAA 3 cut(s) 131, 276, 378
SatI GCNGC 1 cut(s) 210
ScaI AGTACT 1 cut(s) 64
SduI GDGCHC 1 cut(s) 155
SetI ASST 6 cut(s) 27, 88, 96, 340, 359, 384
SfaNI GCATC 2 cut(s) 196, 296
SmiMI CAYNNNNRTG 1 cut(s) 324
SphI GCATGC 1 cut(s) 8
Sse9I AATT 5 cut(s) 41, 78, 116, 132, 213
SspMI CTAG 3 cut(s) 26, 144, 324
TasI AATT 5 cut(s) 41, 78, 116, 132, 213
TatI WGTACW 1 cut(s) 62
TfiI GAWTC 1 cut(s) 169
Tru1I TTAA 3 cut(s) 131, 276, 378
Tru9I TTAA 3 cut(s) 131, 276, 378
TseI GCWGC 1 cut(s) 209
TspDTI ATGAA 1 cut(s) 58
VneI GTGCAC 1 cut(s) 151
VspI ATTAAT 1 cut(s) 131
XapI RAATTY 1 cut(s) 78
XceI RCATGY 1 cut(s) 8
XspI CTAG 3 cut(s) 26, 144, 324
ZrmI AGTACT 1 cut(s) 64
Zsp2I ATGCAT 2 cut(s) 6, 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.