RchiOBHm_Chr1g0337831

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0007544
Physical Location & Seq
Reverse (-)
29789989 .. 29792813
2825 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56571

Sequence Viewer

Length: 318 bp
ATGCTCCTCAAAAAATTAGGAAGTATTAGCAATTTTAATGTGCACGTTTGGGGTTCCTGTGTAAAGCCTAGTTATGCAGATCAGCTTGAGGATTTAATCATAGAGCTGAAAAATCTTCGAAGAATCATTGAGTTGGAGAATCAATCACTACTTGGCCGGCTCACTCTTTCTGCAGAGGCAACCGAGGGCAAACTTGATGAGGTGAGCAGCAATCTGAAACTTCTCACTCTTTCCGTGGAGTCAACCGAGGGCAAACTTGATGAGATTGCTGCTCACCTCATCAAGTTTGCCCCTCGGTTGACTCCGCGGAAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.74

Weight (kDa)

6.13

Isoelectric Point (pI)

33.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 307
AciI CCGC 2 cut(s) 305, 307
AcoI YGGCCR 1 cut(s) 154
AluBI AGCT 2 cut(s) 85, 106
AluI AGCT 2 cut(s) 85, 106
Alw21I GWGCWC 1 cut(s) 45
Alw44I GTGCAC 1 cut(s) 41
AoxI GGCC 1 cut(s) 154
ApaLI GTGCAC 1 cut(s) 41
ApeKI GCWGC 2 cut(s) 207, 269
AsuHPI GGTGA 2 cut(s) 214, 266
AsuII TTCGAA 1 cut(s) 118
BaeGI GKGCMC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 45
BbvI GCAGC 2 cut(s) 219, 256
BfaI CTAG 1 cut(s) 69
BfmI CTRYAG 1 cut(s) 171
BisI GCNGC 2 cut(s) 208, 270
BlsI GCNGC 2 cut(s) 209, 271
BmiI GGNNCC 1 cut(s) 55
Bpu14I TTCGAA 1 cut(s) 118
BpuEI CTTGAG 1 cut(s) 107
BsaJI CCNNGG 5 cut(s) 183, 234, 246, 293, 305
Bse118I RCCGGY 1 cut(s) 156
BseDI CCNNGG 5 cut(s) 183, 234, 246, 293, 305
BseSI GKGCMC 1 cut(s) 45
BseXI GCAGC 2 cut(s) 219, 256
Bsh1236I CGCG 1 cut(s) 307
BshFI GGCC 1 cut(s) 156
BsiHKAI GWGCWC 1 cut(s) 45
BsiSI CCGG 1 cut(s) 157
BsnI GGCC 1 cut(s) 156
Bsp119I TTCGAA 1 cut(s) 118
Bsp1286I GDGCHC 1 cut(s) 45
Bsp143I GATC 1 cut(s) 79
BspACI CCGC 2 cut(s) 305, 307
BspANI GGCC 1 cut(s) 156
BspFNI CGCG 1 cut(s) 307
BspLI GGNNCC 1 cut(s) 55
BspMAI CTGCAG 1 cut(s) 175
BspT104I TTCGAA 1 cut(s) 118
BsrFI RCCGGY 1 cut(s) 156
BssAI RCCGGY 1 cut(s) 156
BssECI CCNNGG 5 cut(s) 183, 234, 246, 293, 305
BssMI GATC 1 cut(s) 79
BstBI TTCGAA 1 cut(s) 118
BstC8I GCNNGC 1 cut(s) 158
BstDSI CCRYGG 2 cut(s) 234, 305
BstFNI CGCG 1 cut(s) 307
BstKTI GATC 1 cut(s) 82
BstMBI GATC 1 cut(s) 79
BstSFI CTRYAG 1 cut(s) 171
BstSLI GKGCMC 1 cut(s) 45
BstUI CGCG 1 cut(s) 307
BstV1I GCAGC 2 cut(s) 219, 256
BsuRI GGCC 1 cut(s) 156
BtgI CCRYGG 2 cut(s) 234, 305
Cac8I GCNNGC 1 cut(s) 158
Cfr10I RCCGGY 1 cut(s) 156
Cfr42I CCGCGG 1 cut(s) 308
CviJI RGCY 5 cut(s) 67, 85, 106, 156, 160
CviKI_1 RGCY 5 cut(s) 67, 85, 106, 156, 160
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
EaeI YGGCCR 1 cut(s) 154
FaiI YATR 2 cut(s) 75, 101
Fnu4HI GCNGC 2 cut(s) 208, 270
Fsp4HI GCNGC 2 cut(s) 208, 270
FspBI CTAG 1 cut(s) 69
GluI GCNGC 2 cut(s) 208, 270
HaeIII GGCC 1 cut(s) 156
HapII CCGG 1 cut(s) 157
HincII GTYRAC 2 cut(s) 243, 300
HindII GTYRAC 2 cut(s) 243, 300
HinfI GANTC 4 cut(s) 123, 139, 239, 301
HpaII CCGG 1 cut(s) 157
HphI GGTGA 2 cut(s) 214, 266
Hpy166II GTNNAC 3 cut(s) 43, 243, 300
Hpy188I TCNGA 1 cut(s) 216
Hpy8I GTNNAC 3 cut(s) 43, 243, 300
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 3 cut(s) 43, 77, 173
HpySE526I ACGT 1 cut(s) 45
KroI GCCGGC 1 cut(s) 156
KroNI GCCGGC 1 cut(s) 158
KspI CCGCGG 1 cut(s) 308
Kzo9I GATC 1 cut(s) 79
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 2 cut(s) 70, 170
Lsp1109I GCAGC 2 cut(s) 219, 256
MaeI CTAG 1 cut(s) 69
MaeII ACGT 1 cut(s) 45
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MboII GAAGA 2 cut(s) 107, 132
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 2 cut(s) 14, 31
MlyI GAGTC 2 cut(s) 248, 295
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 8 cut(s) 17, 82, 169, 178, 193, 241, 287, 303
MroNI GCCGGC 1 cut(s) 156
MseI TTAA 2 cut(s) 36, 95
MspA1I CMGCKG 1 cut(s) 307
MspI CCGG 1 cut(s) 157
MvnI CGCG 1 cut(s) 307
NaeI GCCGGC 1 cut(s) 158
NdeII GATC 1 cut(s) 79
NgoMIV GCCGGC 1 cut(s) 156
NlaIV GGNNCC 1 cut(s) 55
NspV TTCGAA 1 cut(s) 118
PdiI GCCGGC 1 cut(s) 158
PfeI GAWTC 2 cut(s) 123, 139
PkrI GCNGC 2 cut(s) 209, 271
PleI GAGTC 2 cut(s) 247, 295
PpsI GAGTC 2 cut(s) 247, 295
PspN4I GGNNCC 1 cut(s) 55
PstI CTGCAG 1 cut(s) 175
SacII CCGCGG 1 cut(s) 308
SaqAI TTAA 2 cut(s) 36, 95
SatI GCNGC 2 cut(s) 208, 270
Sau3AI GATC 1 cut(s) 79
SchI GAGTC 2 cut(s) 248, 295
SduI GDGCHC 1 cut(s) 45
SetI ASST 5 cut(s) 48, 87, 108, 204, 279
SfcI CTRYAG 1 cut(s) 171
Sfr303I CCGCGG 1 cut(s) 308
SfuI TTCGAA 1 cut(s) 118
SgrBI CCGCGG 1 cut(s) 308
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 2 cut(s) 14, 31
SsiI CCGC 2 cut(s) 305, 307
SspMI CTAG 1 cut(s) 69
TaiI ACGT 1 cut(s) 48
TaqI TCGA 1 cut(s) 118
TasI AATT 2 cut(s) 14, 31
TfiI GAWTC 2 cut(s) 123, 139
Tru1I TTAA 2 cut(s) 36, 95
Tru9I TTAA 2 cut(s) 36, 95
TseI GCWGC 2 cut(s) 207, 269
TspGWI ACGGA 1 cut(s) 223
VneI GTGCAC 1 cut(s) 41
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.