Rh1CG099600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0007544
Physical Location & Seq
Reverse (-)
20968415 .. 20975040
6626 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG099600.1

Sequence Viewer

Length: 1134 bp
ATGGACGCCATCAGTAGCAGAATAAATCTCTCCACCGAGACGGTAAGATATTTGGAGAAGAAACTAATTGAAGGTAGAGCTATAGTTGAGAAGCTGTCCAAACTCAGCTGTTGGAATTTTCGGATTATAAGTGACTGTTGCGGAGGTAGCTATGCAGAGAAGCTCAATGACATCACTACGTTTCTTCGAAGGTTGGCTTTGATGCTAGGGATGGATGGGCTGAGGCACGTGCTGGAGATCTTAGAGTTAACCAGGAGATCCAAGGACGATGATGAGGAGCAAAGAAAACAATTGAACAAGGTGCTGAGTATAGTTGAAAATGTGGCCAAACAAGTAAATGATGTCTCGATGAAGTTGGAGAAGGCAGAAGAGAGGGCCAATGAAATAAGAGCTCTGTTAGCTGGGCTTAATGGCAGTAGTCTAGGAGGAGGGGATGGGGCTGCCCTCCTTGTAGACTTTAAGAATTTGATCGAAGCTCAGGGCGGTGAAGACTTTTTCAACAGCTTCTCTCAGCTTCTGGATAAAATTTTGAAGCTCGAGCAGAATGGTGTGGTGGAGGATAGCAAACAGATCATTTGGAATGCCAAGGCGTGGCTTACTAATTTTCAGAGAGCACAAGTTGGCTGCAGGATTGTGACCAAAGCTGCAAATCAGACTACACTGAATGTTAAATGGAGACCACCTACTGTACCAAATTTGAAGTTGAATGCGGATGCAGCGGTGGATGGTAAGAAAAAGAAGTCTGGTCTTGGTATGGTGGTTCGGGATGGAGAGGGGAATTTGAAAGGTGCTGCTCAAGTGTTTGTCAAAGTTAAAACTGAAAAAGGCACTGTGTCAAGGAGGAAACTCAAAGGGAAACAGAACAATGGAGGTTCAAGCTTGCCCTTGGTTGATAACAGGACATCAAGAGAAGTTGTGAACCTATGTGAGATGCAAGTGGCCGCTGCAGCCTGTGATGAAAAACATACTGTGGAGCTCGATCAAGTTCAGGTCATGGAAAACAACATTGATCTATTGTCTGGTCTTTCCGATGGTGATGATGTAAAGCTGGTTGAATCTTGTGGGGAGGGTTCAAACAAGGAGACTCCTAGCAAAGAGCTTTCCCAAGAAGGTTGCTTGCCGCAAGTCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4477

Protein Analysis

377

Amino Acids

41.41

Weight (kDa)

7.48

Isoelectric Point (pI)

34.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 128
AccB7I CCANNNNNTGG 1 cut(s) 591
AccI GTMKAC 1 cut(s) 453
AciI CCGC 6 cut(s) 141, 483, 710, 719, 942, 1121
AclWI GGATC 1 cut(s) 252
AcoI YGGCCR 2 cut(s) 324, 939
AcsI RAATTY 5 cut(s) 115, 463, 525, 694, 778
AcvI CACGTG 1 cut(s) 229
AcyI GRCGYC 1 cut(s) 6
AfaI GTAC 1 cut(s) 690
AfiI CCNNNNNNNGG 1 cut(s) 591
AjnI CCWGG 1 cut(s) 251
Alw21I GWGCWC 3 cut(s) 394, 616, 978
Alw26I GTCTC 4 cut(s) 32, 349, 670, 1076
AlwI GGATC 1 cut(s) 252
AlwNI CAGNNNCTG 1 cut(s) 517
Ama87I CYCGRG 1 cut(s) 536
AoxI GGCC 3 cut(s) 324, 375, 939
ApeKI GCWGC 7 cut(s) 440, 624, 644, 716, 791, 944, 947
ApoI RAATTY 5 cut(s) 115, 463, 525, 694, 778
AspS9I GGNCC 1 cut(s) 375
AsuHPI GGTGA 2 cut(s) 497, 1046
AsuII TTCGAA 1 cut(s) 187
AvaI CYCGRG 1 cut(s) 536
BalI TGGCCA 1 cut(s) 326
BanII GRGCYC 2 cut(s) 394, 978
BbrPI CACGTG 1 cut(s) 229
BbsI GAAGAC 1 cut(s) 495
Bbv12I GWGCWC 3 cut(s) 394, 616, 978
BbvCI CCTCAGC 1 cut(s) 221
BbvI GCAGC 7 cut(s) 427, 611, 631, 728, 778, 931, 959
BccI CCATC 7 cut(s) 17, 205, 209, 428, 719, 761, 1025
BciT130I CCWGG 1 cut(s) 253
BcoDI GTCTC 4 cut(s) 32, 349, 670, 1076
BfaI CTAG 3 cut(s) 206, 422, 1089
BfmI CTRYAG 3 cut(s) 81, 625, 945
BglII AGATCT 1 cut(s) 237
BisI GCNGC 9 cut(s) 441, 625, 645, 717, 792, 942, 945, 948, 1121
BlsI GCNGC 9 cut(s) 442, 626, 646, 718, 793, 943, 946, 949, 1122
Bme1390I CCNGG 1 cut(s) 253
BmeT110I CYCGRG 1 cut(s) 536
BmgT120I GGNCC 1 cut(s) 375
BmrFI CCNGG 1 cut(s) 253
BmsI GCATC 3 cut(s) 192, 703, 921
BpiI GAAGAC 1 cut(s) 495
BpmI CTGGAG 1 cut(s) 254
Bpu10I CCTNAGC 2 cut(s) 221, 477
Bpu14I TTCGAA 1 cut(s) 187
BpuEI CTTGAG 1 cut(s) 780
BsaAI YACGTR 1 cut(s) 229
BsaHI GRCGYC 1 cut(s) 6
BsaI GGTCTC 1 cut(s) 670
BsaJI CCNNGG 3 cut(s) 261, 585, 885
Bsc4I CCNNNNNNNGG 1 cut(s) 591
BseBI CCWGG 1 cut(s) 253
BseDI CCNNGG 3 cut(s) 261, 585, 885
BseGI GGATG 6 cut(s) 216, 220, 439, 718, 730, 772
BseLI CCNNNNNNNGG 1 cut(s) 591
BseMII CTCAG 5 cut(s) 118, 212, 296, 491, 524
BseRI GAGGAG 2 cut(s) 290, 441
BseXI GCAGC 7 cut(s) 427, 611, 631, 728, 778, 931, 959
BseYI CCCAGC 1 cut(s) 401
BshFI GGCC 3 cut(s) 326, 377, 941
BsiHKAI GWGCWC 3 cut(s) 394, 616, 978
BsiHKCI CYCGRG 1 cut(s) 536
BslFI GGGAC 1 cut(s) 1112
BslI CCNNNNNNNGG 1 cut(s) 591
BsmAI GTCTC 4 cut(s) 32, 349, 670, 1076
BsmBI CGTCTC 1 cut(s) 32
BsmFI GGGAC 1 cut(s) 1112
BsmI GAATGC 2 cut(s) 586, 712
BsnI GGCC 3 cut(s) 326, 377, 941
Bso31I GGTCTC 1 cut(s) 670
BsoBI CYCGRG 1 cut(s) 536
Bsp119I TTCGAA 1 cut(s) 187
Bsp1286I GDGCHC 3 cut(s) 394, 616, 978
Bsp143I GATC 6 cut(s) 237, 257, 468, 570, 979, 1009
BspACI CCGC 6 cut(s) 141, 483, 710, 719, 942, 1121
BspANI GGCC 3 cut(s) 326, 377, 941
BspCNI CTCAG 5 cut(s) 117, 213, 297, 490, 523
BspMAI CTGCAG 2 cut(s) 629, 949
BspPI GGATC 1 cut(s) 252
BspT104I TTCGAA 1 cut(s) 187
BspTNI GGTCTC 1 cut(s) 670
BssECI CCNNGG 3 cut(s) 261, 585, 885
BssMI GATC 6 cut(s) 237, 257, 468, 570, 979, 1009
BssNI GRCGYC 1 cut(s) 6
BssT1I CCWWGG 3 cut(s) 261, 585, 885
Bst2UI CCWGG 1 cut(s) 253
Bst4CI ACNGT 5 cut(s) 43, 137, 688, 832, 970
Bst6I CTCTTC 1 cut(s) 363
BstACI GRCGYC 1 cut(s) 6
BstBAI YACGTR 1 cut(s) 229
BstBI TTCGAA 1 cut(s) 187
BstC8I GCNNGC 2 cut(s) 881, 1118
BstDEI CTNAG 6 cut(s) 104, 221, 241, 305, 477, 510
BstF5I GGATG 6 cut(s) 216, 220, 439, 718, 730, 772
BstKTI GATC 6 cut(s) 240, 260, 471, 573, 982, 1012
BstMAI GTCTC 4 cut(s) 32, 349, 670, 1076
BstMBI GATC 6 cut(s) 237, 257, 468, 570, 979, 1009
BstMWI GCNNNNNNNGC 4 cut(s) 147, 398, 716, 947
BstNI CCWGG 1 cut(s) 253
BstSCI CCNGG 1 cut(s) 251
BstSFI CTRYAG 3 cut(s) 81, 625, 945
BstV1I GCAGC 7 cut(s) 427, 611, 631, 728, 778, 931, 959
BstV2I GAAGAC 1 cut(s) 495
BstX2I RGATCY 2 cut(s) 237, 257
BstYI RGATCY 2 cut(s) 237, 257
BsuRI GGCC 3 cut(s) 326, 377, 941
BtsCI GGATG 6 cut(s) 216, 220, 439, 718, 730, 772
BtsIMutI CAGTG 2 cut(s) 659, 828
Cac8I GCNNGC 2 cut(s) 881, 1118
CaiI CAGNNNCTG 1 cut(s) 517
Cfr13I GGNCC 1 cut(s) 375
CseI GACGC 1 cut(s) 14
Csp6I GTAC 1 cut(s) 689
CviAII CATG 1 cut(s) 994
CviQI GTAC 1 cut(s) 689
DdeI CTNAG 6 cut(s) 104, 221, 241, 305, 477, 510
DpnI GATC 6 cut(s) 239, 259, 470, 572, 981, 1011
DpnII GATC 6 cut(s) 237, 257, 468, 570, 979, 1009
EaeI YGGCCR 2 cut(s) 324, 939
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Ecl136II GAGCTC 2 cut(s) 392, 976
Eco130I CCWWGG 3 cut(s) 261, 585, 885
Eco24I GRGCYC 2 cut(s) 394, 978
Eco31I GGTCTC 1 cut(s) 670
Eco53kI GAGCTC 2 cut(s) 392, 976
Eco72I CACGTG 1 cut(s) 229
Eco88I CYCGRG 1 cut(s) 536
EcoICRI GAGCTC 2 cut(s) 392, 976
EcoRII CCWGG 1 cut(s) 251
EcoT14I CCWWGG 3 cut(s) 261, 585, 885
EcoT38I GRGCYC 2 cut(s) 394, 978
ErhI CCWWGG 3 cut(s) 261, 585, 885
Esp3I CGTCTC 1 cut(s) 32
FaeI CATG 1 cut(s) 997
FaiI YATR 8 cut(s) 83, 128, 153, 311, 755, 925, 966, 995
FalI AAGNNNNNCTT 2 cut(s) 181, 213
FaqI GGGAC 1 cut(s) 1112
FatI CATG 1 cut(s) 993
FblI GTMKAC 1 cut(s) 453
Fnu4HI GCNGC 9 cut(s) 441, 625, 645, 717, 792, 942, 945, 948, 1121
FokI GGATG 6 cut(s) 223, 227, 446, 725, 737, 779
FriOI GRGCYC 2 cut(s) 394, 978
Fsp4HI GCNGC 9 cut(s) 441, 625, 645, 717, 792, 942, 945, 948, 1121
FspBI CTAG 3 cut(s) 206, 422, 1089
GluI GCNGC 9 cut(s) 441, 625, 645, 717, 792, 942, 945, 948, 1121
GsaI CCCAGC 1 cut(s) 405
GsuI CTGGAG 1 cut(s) 254
HaeIII GGCC 3 cut(s) 326, 377, 941
HgaI GACGC 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 6
Hin1II CATG 1 cut(s) 997
HincII GTYRAC 1 cut(s) 249
HindII GTYRAC 1 cut(s) 249
HindIII AAGCTT 1 cut(s) 877
HinfI GANTC 2 cut(s) 1055, 1084
HpaI GTTAAC 1 cut(s) 249
HphI GGTGA 2 cut(s) 497, 1046
Hpy166II GTNNAC 3 cut(s) 249, 454, 919
Hpy188I TCNGA 4 cut(s) 123, 609, 654, 1030
Hpy188III TCNNGA 4 cut(s) 346, 518, 764, 906
Hpy8I GTNNAC 3 cut(s) 249, 454, 919
HpyAV CCTTC 4 cut(s) 65, 183, 355, 1103
HpyCH4III ACNGT 5 cut(s) 43, 137, 688, 832, 970
HpyCH4IV ACGT 2 cut(s) 179, 228
HpyCH4V TGCA 6 cut(s) 155, 627, 647, 716, 934, 947
HpyF10VI GCNNNNNNNGC 4 cut(s) 147, 398, 716, 947
HpyF3I CTNAG 6 cut(s) 104, 221, 241, 305, 477, 510
HpySE526I ACGT 2 cut(s) 179, 228
Hsp92I GRCGYC 1 cut(s) 6
Hsp92II CATG 1 cut(s) 997
KspAI GTTAAC 1 cut(s) 249
Kzo9I GATC 6 cut(s) 237, 257, 468, 570, 979, 1009
LmnI GCTCC 2 cut(s) 277, 973
Lsp1109I GCAGC 7 cut(s) 427, 611, 631, 728, 778, 931, 959
LweI GCATC 3 cut(s) 192, 703, 921
MaeI CTAG 3 cut(s) 206, 422, 1089
MaeII ACGT 2 cut(s) 179, 228
MaeIII GTNAC 2 cut(s) 131, 634
MalI GATC 6 cut(s) 239, 259, 470, 572, 981, 1011
MboI GATC 6 cut(s) 237, 257, 468, 570, 979, 1009
MboII GAAGA 4 cut(s) 70, 176, 380, 500
MfeI CAATTG 1 cut(s) 290
MflI RGATCY 2 cut(s) 237, 257
MhlI GDGCHC 3 cut(s) 394, 616, 978
MlsI TGGCCA 1 cut(s) 326
MluCI AATT 8 cut(s) 66, 115, 290, 463, 525, 601, 694, 778
MluNI TGGCCA 1 cut(s) 326
MlyI GAGTC 1 cut(s) 1078
MmeI TCCRAC 2 cut(s) 92, 336
Mox20I TGGCCA 1 cut(s) 326
MscI TGGCCA 1 cut(s) 326
MseI TTAA 5 cut(s) 248, 408, 459, 669, 813
Msp20I TGGCCA 1 cut(s) 326
MspA1I CMGCKG 3 cut(s) 108, 719, 944
MspR9I CCNGG 1 cut(s) 253
MunI CAATTG 1 cut(s) 290
Mva1269I GAATGC 2 cut(s) 586, 712
MvaI CCWGG 1 cut(s) 253
MwoI GCNNNNNNNGC 4 cut(s) 147, 398, 716, 947
NdeII GATC 6 cut(s) 237, 257, 468, 570, 979, 1009
NlaIII CATG 1 cut(s) 997
NmuCI GTSAC 2 cut(s) 131, 634
NspV TTCGAA 1 cut(s) 187
PaeR7I CTCGAG 1 cut(s) 536
PctI GAATGC 2 cut(s) 586, 712
PfeI GAWTC 1 cut(s) 1055
PflMI CCANNNNNTGG 1 cut(s) 591
PkrI GCNGC 9 cut(s) 442, 626, 646, 718, 793, 943, 946, 949, 1122
PleI GAGTC 1 cut(s) 1078
PmaCI CACGTG 1 cut(s) 229
PmlI CACGTG 1 cut(s) 229
PpsI GAGTC 1 cut(s) 1078
Ppu21I YACGTR 1 cut(s) 229
PsiI TTATAA 1 cut(s) 128
Psp124BI GAGCTC 2 cut(s) 394, 978
Psp6I CCWGG 1 cut(s) 251
PspCI CACGTG 1 cut(s) 229
PspFI CCCAGC 1 cut(s) 401
PspGI CCWGG 1 cut(s) 251
PspPI GGNCC 1 cut(s) 375
PspXI VCTCGAGB 1 cut(s) 536
PstI CTGCAG 2 cut(s) 629, 949
PstNI CAGNNNCTG 1 cut(s) 517
PsuI RGATCY 2 cut(s) 237, 257
PvuII CAGCTG 1 cut(s) 108
RsaI GTAC 1 cut(s) 690
RsaNI GTAC 1 cut(s) 689
SacI GAGCTC 2 cut(s) 394, 978
SaqAI TTAA 5 cut(s) 248, 408, 459, 669, 813
SatI GCNGC 9 cut(s) 441, 625, 645, 717, 792, 942, 945, 948, 1121
Sau3AI GATC 6 cut(s) 237, 257, 468, 570, 979, 1009
Sau96I GGNCC 1 cut(s) 375
SchI GAGTC 1 cut(s) 1078
ScrFI CCNGG 1 cut(s) 253
SduI GDGCHC 3 cut(s) 394, 616, 978
SfaNI GCATC 3 cut(s) 192, 703, 921
SfcI CTRYAG 3 cut(s) 81, 625, 945
Sfr274I CTCGAG 1 cut(s) 536
SfuI TTCGAA 1 cut(s) 187
SlaI CTCGAG 1 cut(s) 536
SmlI CTYRAG 2 cut(s) 536, 795
SmoI CTYRAG 2 cut(s) 536, 795
Sse9I AATT 8 cut(s) 66, 115, 290, 463, 525, 601, 694, 778
SsiI CCGC 6 cut(s) 141, 483, 710, 719, 942, 1121
SspMI CTAG 3 cut(s) 206, 422, 1089
SstI GAGCTC 2 cut(s) 394, 978
StyD4I CCNGG 1 cut(s) 251
StyI CCWWGG 3 cut(s) 261, 585, 885
TaaI ACNGT 5 cut(s) 43, 137, 688, 832, 970
TaiI ACGT 2 cut(s) 182, 231
TaqI TCGA 5 cut(s) 187, 347, 471, 537, 978
TasI AATT 8 cut(s) 66, 115, 290, 463, 525, 601, 694, 778
TauI GCSGC 2 cut(s) 944, 1123
TfiI GAWTC 1 cut(s) 1055
Tru1I TTAA 5 cut(s) 248, 408, 459, 669, 813
Tru9I TTAA 5 cut(s) 248, 408, 459, 669, 813
TscAI CASTG 2 cut(s) 666, 835
TseFI GTSAC 2 cut(s) 131, 634
TseI GCWGC 7 cut(s) 440, 624, 644, 716, 791, 944, 947
Tsp45I GTSAC 2 cut(s) 131, 634
TspDTI ATGAA 3 cut(s) 365, 396, 972
TspRI CASTG 2 cut(s) 666, 835
Van91I CCANNNNNTGG 1 cut(s) 591
XapI RAATTY 5 cut(s) 115, 463, 525, 694, 778
XhoI CTCGAG 1 cut(s) 536
XmiI GTMKAC 1 cut(s) 453
XspI CTAG 3 cut(s) 206, 422, 1089
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.