Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0007544

Physical Location & Seq

Genomic Coordinates Reverse (-)

4558962 .. 4559267

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG065400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGACGTCTCTGGCTCTAACCTTTCTGGGAGGAGCCCCTTTTCAACTGCTGTATGAAGGCGTTAAGATAGCTATTCGCAAAAGTAACAAGTTTAGAACTCACCTCGAAAATCTGGAAATGACGCTAGGCTGTTTGCAACCATGGATCATTCAACAGATAAGAGCAAATAATGTGCAACTGAATCTCCCAAACAATTTGATACAAGATCTTGAAATAAAAATGGAGGAGGGCAAAGAGCTGTTTACAAGTTATCAAGGCTTGGCGTTTGGAACATCCGTGTCTGGGGAAATTGCTACAATTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002237 GO:0002239 GO:0002682 GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009889 GO:0009987 GO:0010033 GO:0010112 GO:0010224 GO:0010337 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032350 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0043902 GO:0044424 GO:0044464 GO:0045088 GO:0046885 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071216 GO:0071219 GO:0080090 GO:0080134 GO:0080142 GO:0097159 GO:0098542 GO:0140110 GO:1900424 GO:1900426 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Calmodulin_bind

Protein Analysis

101

Amino Acids

11.28

Weight (kDa)

5.74

Isoelectric Point (pI)

33.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	11 - 88	8.4e-08	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007544)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0337761 RchiOBHm_Chr1g0337831
rosa_laevigata	RLG00000015780 RLG00000029499 RLG00000029520 RLG00000029773
rosa_multiflora	Rmu_sc0002899.1_g000001 Rmu_sc0003367.1_g000022 Rmu_sc0006537.1_g000039
rosa_roxburghii	Rroxscaffold_1G00022150 Rroxscaffold_4G00328560
rosa_samantha	Rh1AG111900 Rh1CG099600 Rh1CG107600 Rh1CG108700 Rh1DG106800 Rh1DG115000 Rh1DG116400 Rh2AG020700 Rh2AG020800 Rh2CG021700 Rh2CG158100 Rh2DG021400 Rh2DG021500 Rh7AG065400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	8
AclWI	GGATC	1 cut(s)	152
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	282
AgsI	TTSAA	3 cut(s)	44, 152, 212
AluBI	AGCT	2 cut(s)	71, 238
AluI	AGCT	2 cut(s)	71, 238
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	1 cut(s)	152
AsuHPI	GGTGA	1 cut(s)	92
BanII	GRGCYC	1 cut(s)	37
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	1 cut(s)	125
BglII	AGATCT	1 cut(s)	205
BmiI	GGNNCC	1 cut(s)	34
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	140
BsaXI	ACNNNNNCTCC	2 cut(s)	168, 198
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	140
BseGI	GGATG	1 cut(s)	272
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseRI	GAGGAG	2 cut(s)	45, 239
BslI	CCNNNNNNNGG	1 cut(s)	282
BsmAI	GTCTC	1 cut(s)	12
BsmBI	CGTCTC	1 cut(s)	12
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp143I	GATC	2 cut(s)	144, 205
Bsp19I	CCATGG	1 cut(s)	140
BspLI	GGNNCC	1 cut(s)	34
BspPI	GGATC	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	140
BssMI	GATC	2 cut(s)	144, 205
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	140
BstACI	GRCGYC	1 cut(s)	5
BstDSI	CCRYGG	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	272
BstKTI	GATC	2 cut(s)	147, 208
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	2 cut(s)	144, 205
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BtgI	CCRYGG	1 cut(s)	140
BtsCI	GGATG	1 cut(s)	272
CseI	GACGC	1 cut(s)	130
CviAII	CATG	1 cut(s)	141
CviJI	RGCY	6 cut(s)	14, 35, 71, 129, 238, 258
CviKI_1	RGCY	6 cut(s)	14, 35, 71, 129, 238, 258
DpnI	GATC	2 cut(s)	146, 207
DpnII	GATC	2 cut(s)	144, 205
Eco130I	CCWWGG	1 cut(s)	140
Eco24I	GRGCYC	1 cut(s)	37
EcoT14I	CCWWGG	1 cut(s)	140
EcoT38I	GRGCYC	1 cut(s)	37
ErhI	CCWWGG	1 cut(s)	140
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	1 cut(s)	144
FaiI	YATR	3 cut(s)	54, 142, 304
FatI	CATG	1 cut(s)	140
FokI	GGATG	1 cut(s)	259
FriOI	GRGCYC	1 cut(s)	37
FspBI	CTAG	1 cut(s)	125
HgaI	GACGC	1 cut(s)	130
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	144
HinfI	GANTC	1 cut(s)	181
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	1 cut(s)	243
Hpy188III	TCNNGA	2 cut(s)	113, 209
Hpy8I	GTNNAC	1 cut(s)	243
HpyAV	CCTTC	1 cut(s)	50
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	2 cut(s)	136, 175
HpySE526I	ACGT	1 cut(s)	5
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	144
Kzo9I	GATC	2 cut(s)	144, 205
LmnI	GCTCC	1 cut(s)	32
LpnPI	CCDG	3 cut(s)	11, 98, 267
MaeI	CTAG	1 cut(s)	125
MaeII	ACGT	1 cut(s)	5
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	2 cut(s)	146, 207
MboI	GATC	2 cut(s)	144, 205
MfeI	CAATTG	1 cut(s)	297
MflI	RGATCY	1 cut(s)	205
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	3 cut(s)	193, 288, 297
MnlI	CCTC	4 cut(s)	23, 113, 217, 220
MseI	TTAA	1 cut(s)	63
MunI	CAATTG	1 cut(s)	297
NcoI	CCATGG	1 cut(s)	140
NdeII	GATC	2 cut(s)	144, 205
NlaIII	CATG	1 cut(s)	144
NlaIV	GGNNCC	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	181
PspN4I	GGNNCC	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	205
SaqAI	TTAA	1 cut(s)	63
Sau3AI	GATC	2 cut(s)	144, 205
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	5 cut(s)	8, 23, 73, 105, 240
Sse9I	AATT	3 cut(s)	193, 288, 297
SspMI	CTAG	1 cut(s)	125
StyI	CCWWGG	1 cut(s)	140
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	1 cut(s)	105
TasI	AATT	3 cut(s)	193, 288, 297
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TspDTI	ATGAA	1 cut(s)	69
TspGWI	ACGGA	1 cut(s)	265
XspI	CTAG	1 cut(s)	125
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.