Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007544

Physical Location & Seq

Genomic Coordinates Reverse (-)

1512011 .. 1512589

Gene Structure 579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG020700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGATGGAACGGGGAAAAATCAGGTTAGCATGCAATCAGCCCAATGATATAATTGGCCAAGATGTTTCGGCAAGAGAAGGGCCTGCTGCTCCTTCTCTGATATCACAACTTCTGAGTGCATTTCGTGCCTTCTCCGATGCCCTACAAGGAAATTCGAAAAGTTGCAAGATTTATACACTGCTGGAACTGAGTCTAAAGTGTCTGGAACCATTGCTGTTACTGCTATCTACATATGGAAAGGCCTTCCATTCAAAGGAAGAACTGTTGAAGGAACTACATTTGTGCCTATCTACACAGCTTGTTGGCAAATTTTGGAATAGGTACAATAGTGATTACAAGGACAAGCTTTCTCAGTTAGACTTTGATCTCCAAGACCTCTTCCTTATACTGTTCTTGGAAATTGAAAATGATTTAAAGAGCTTGCAATGGGAGATCGATCAGCAGCGTGCTTTGGTTCCAGCATGTGAAGGGCAATCAGTCTCTGAAGTTGACACTGTAGCAGCGGAATCAGTCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

172

Amino Acids

19.33

Weight (kDa)

4.86

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0007544)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0337761 RchiOBHm_Chr1g0337831
rosa_laevigata	RLG00000015780 RLG00000029499 RLG00000029520 RLG00000029773
rosa_multiflora	Rmu_sc0002899.1_g000001 Rmu_sc0003367.1_g000022 Rmu_sc0006537.1_g000039
rosa_roxburghii	Rroxscaffold_1G00022150 Rroxscaffold_4G00328560
rosa_samantha	Rh1AG111900 Rh1CG099600 Rh1CG107600 Rh1CG108700 Rh1DG106800 Rh1DG115000 Rh1DG116400 Rh2AG020700 Rh2AG020800 Rh2CG021700 Rh2CG158100 Rh2DG021400 Rh2DG021500 Rh7AG065400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	503
AcoI	YGGCCR	1 cut(s)	55
AcsI	RAATTY	2 cut(s)	151, 308
AcuI	CTGAAG	1 cut(s)	504
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	1 cut(s)	253
AgsI	TTSAA	3 cut(s)	252, 268, 404
AluBI	AGCT	3 cut(s)	298, 346, 420
AluI	AGCT	3 cut(s)	298, 346, 420
Alw26I	GTCTC	1 cut(s)	484
AlwNI	CAGNNNCTG	1 cut(s)	482
AoxI	GGCC	3 cut(s)	55, 80, 240
ApeKI	GCWGC	3 cut(s)	86, 442, 500
ApoI	RAATTY	2 cut(s)	151, 308
AspS9I	GGNCC	1 cut(s)	80
AsuII	TTCGAA	1 cut(s)	155
BaeI	ACNNNNGTAYC	2 cut(s)	313, 346
BalI	TGGCCA	1 cut(s)	57
BbvI	GCAGC	3 cut(s)	73, 454, 512
BcoDI	GTCTC	1 cut(s)	484
BfmI	CTRYAG	1 cut(s)	495
BisI	GCNGC	3 cut(s)	87, 443, 501
BlsI	GCNGC	3 cut(s)	88, 444, 502
BmgT120I	GGNCC	1 cut(s)	80
BmiI	GGNNCC	2 cut(s)	207, 456
BmsI	GCATC	1 cut(s)	127
Bpu14I	TTCGAA	1 cut(s)	155
Bsa29I	ATCGAT	1 cut(s)	435
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse3DI	GCAATG	2 cut(s)	209, 431
BseCI	ATCGAT	1 cut(s)	435
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseMI	GCAATG	2 cut(s)	209, 431
BseMII	CTCAG	3 cut(s)	104, 179, 365
BseXI	GCAGC	3 cut(s)	73, 454, 512
BshFI	GGCC	3 cut(s)	57, 82, 242
BshVI	ATCGAT	1 cut(s)	435
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmAI	GTCTC	1 cut(s)	484
BsnI	GGCC	3 cut(s)	57, 82, 242
Bsp119I	TTCGAA	1 cut(s)	155
Bsp143I	GATC	3 cut(s)	364, 432, 436
BspACI	CCGC	1 cut(s)	503
BspANI	GGCC	3 cut(s)	57, 82, 242
BspCNI	CTCAG	3 cut(s)	105, 180, 364
BspDI	ATCGAT	1 cut(s)	435
BspLI	GGNNCC	2 cut(s)	207, 456
BspT104I	TTCGAA	1 cut(s)	155
BsrDI	GCAATG	2 cut(s)	209, 431
BssMI	GATC	3 cut(s)	364, 432, 436
Bst4CI	ACNGT	3 cut(s)	264, 390, 496
Bst6I	CTCTTC	1 cut(s)	383
BstAPI	GCANNNNNTGC	1 cut(s)	125
BstBI	TTCGAA	1 cut(s)	155
BstC8I	GCNNGC	4 cut(s)	31, 84, 422, 447
BstDEI	CTNAG	3 cut(s)	113, 188, 351
BstKTI	GATC	3 cut(s)	367, 435, 439
BstMAI	GTCTC	1 cut(s)	484
BstMBI	GATC	3 cut(s)	364, 432, 436
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 220
BstNSI	RCATGY	2 cut(s)	33, 465
BstSFI	CTRYAG	1 cut(s)	495
BstV1I	GCAGC	3 cut(s)	73, 454, 512
Bsu15I	ATCGAT	1 cut(s)	435
BsuRI	GGCC	3 cut(s)	57, 82, 242
BsuTUI	ATCGAT	1 cut(s)	435
BtsI	GCAGTG	1 cut(s)	176
BtsIMutI	CAGTG	2 cut(s)	176, 492
Cac8I	GCNNGC	4 cut(s)	31, 84, 422, 447
CaiI	CAGNNNCTG	1 cut(s)	482
Cfr13I	GGNCC	1 cut(s)	80
ClaI	ATCGAT	1 cut(s)	435
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	2 cut(s)	30, 462
CviJI	RGCY	7 cut(s)	40, 57, 82, 242, 298, 346, 420
CviKI_1	RGCY	7 cut(s)	40, 57, 82, 242, 298, 346, 420
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	3 cut(s)	113, 188, 351
DpnI	GATC	3 cut(s)	366, 434, 438
DpnII	GATC	3 cut(s)	364, 432, 436
DraI	TTTAAA	1 cut(s)	414
EaeI	YGGCCR	1 cut(s)	55
Eam1104I	CTCTTC	1 cut(s)	383
EarI	CTCTTC	1 cut(s)	383
Eco147I	AGGCCT	1 cut(s)	242
Eco32I	GATATC	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	504
EcoO109I	RGGNCCY	1 cut(s)	80
EcoRV	GATATC	1 cut(s)	102
FaeI	CATG	2 cut(s)	33, 465
FaiI	YATR	7 cut(s)	31, 50, 174, 232, 234, 386, 463
FatI	CATG	2 cut(s)	29, 461
FauNDI	CATATG	1 cut(s)	232
Fnu4HI	GCNGC	3 cut(s)	87, 443, 501
Fsp4HI	GCNGC	3 cut(s)	87, 443, 501
GluI	GCNGC	3 cut(s)	87, 443, 501
HaeIII	GGCC	3 cut(s)	57, 82, 242
Hin1II	CATG	2 cut(s)	33, 465
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	2 cut(s)	190, 506
Hpy166II	GTNNAC	1 cut(s)	490
Hpy188I	TCNGA	4 cut(s)	99, 114, 136, 484
Hpy188III	TCNNGA	1 cut(s)	203
Hpy8I	GTNNAC	1 cut(s)	490
HpyAV	CCTTC	6 cut(s)	71, 102, 139, 253, 262, 461
HpyCH4III	ACNGT	3 cut(s)	264, 390, 496
HpyCH4V	TGCA	4 cut(s)	33, 119, 165, 424
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 220
HpyF3I	CTNAG	3 cut(s)	113, 188, 351
Hsp92II	CATG	2 cut(s)	33, 465
Kzo9I	GATC	3 cut(s)	364, 432, 436
LmnI	GCTCC	1 cut(s)	94
LpnPI	CCDG	5 cut(s)	7, 96, 167, 188, 471
Lsp1109I	GCAGC	3 cut(s)	73, 454, 512
LweI	GCATC	1 cut(s)	127
MaeIII	GTNAC	1 cut(s)	216
MalI	GATC	3 cut(s)	366, 434, 438
MboI	GATC	3 cut(s)	364, 432, 436
MboII	GAAGA	2 cut(s)	269, 370
MlsI	TGGCCA	1 cut(s)	57
MluCI	AATT	4 cut(s)	51, 151, 308, 399
MluNI	TGGCCA	1 cut(s)	57
MlyI	GAGTC	1 cut(s)	199
MnlI	CCTC	1 cut(s)	386
Mox20I	TGGCCA	1 cut(s)	57
MscI	TGGCCA	1 cut(s)	57
MseI	TTAA	2 cut(s)	413, 517
Msp20I	TGGCCA	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	503
MwoI	GCNNNNNNNGC	2 cut(s)	125, 220
NdeI	CATATG	1 cut(s)	232
NdeII	GATC	3 cut(s)	364, 432, 436
NlaIII	CATG	2 cut(s)	33, 465
NlaIV	GGNNCC	2 cut(s)	207, 456
NspI	RCATGY	2 cut(s)	33, 465
NspV	TTCGAA	1 cut(s)	155
PaeI	GCATGC	1 cut(s)	33
PceI	AGGCCT	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	506
PkrI	GCNGC	3 cut(s)	88, 444, 502
PleI	GAGTC	1 cut(s)	198
PpsI	GAGTC	1 cut(s)	198
PspN4I	GGNNCC	2 cut(s)	207, 456
PspPI	GGNCC	1 cut(s)	80
PstNI	CAGNNNCTG	1 cut(s)	482
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
SaqAI	TTAA	2 cut(s)	413, 517
SatI	GCNGC	3 cut(s)	87, 443, 501
Sau3AI	GATC	3 cut(s)	364, 432, 436
Sau96I	GGNCC	1 cut(s)	80
SchI	GAGTC	1 cut(s)	199
SetI	ASST	6 cut(s)	26, 300, 323, 348, 378, 422
SfaNI	GCATC	1 cut(s)	127
SfcI	CTRYAG	1 cut(s)	495
SfuI	TTCGAA	1 cut(s)	155
SphI	GCATGC	1 cut(s)	33
Sse9I	AATT	4 cut(s)	51, 151, 308, 399
SseBI	AGGCCT	1 cut(s)	242
SsiI	CCGC	1 cut(s)	503
StuI	AGGCCT	1 cut(s)	242
TaaI	ACNGT	3 cut(s)	264, 390, 496
TaqI	TCGA	2 cut(s)	155, 435
TasI	AATT	4 cut(s)	51, 151, 308, 399
TfiI	GAWTC	1 cut(s)	506
Tru1I	TTAA	2 cut(s)	413, 517
Tru9I	TTAA	2 cut(s)	413, 517
TscAI	CASTG	2 cut(s)	183, 499
TseI	GCWGC	3 cut(s)	86, 442, 500
TspRI	CASTG	2 cut(s)	183, 499
XapI	RAATTY	2 cut(s)	151, 308
XceI	RCATGY	2 cut(s)	33, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.