Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007544

Physical Location & Seq

Genomic Coordinates Reverse (-)

1394467 .. 1394985

Gene Structure 519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015780

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAACGACGGTGTTCAGCTTCTTAGCGAAATGGCAAGTGTTAGCGGTTTAAATGTGCACAAAGGCTTAGGGTGGAGACTTACGAGACAGATTGGAATTTGGGCGAAGACACTATACGACAACCGGGATGATGGAACGGGGAAAAATCAGGTCAGCATTAATGAGATAATTGACCAAGGTGTTGCGGCGGCAAGAGAACCTCCTTCTCTGATATCACGAGTTCTGGCTGCATTTGGTGCCTTCTCCGATGCCCTGCAAGGAAATTCGAAAAGTTGCAAGATTTGTACACGTCTGGATCTAAGTCGTCTAAAGTGTCTGGAAACCATTGTTGTTGCTGCTTTCTACACACGGCAAGTCCTTCCATACAAAGGAAGAAGTGTTGAACCAAATCCATTTGTGCCTATCTACACAGACACAGCTTGTTGGCCCATTTTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

16.04

Weight (kDa)

8.39

Isoelectric Point (pI)

39.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007544)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0337761 RchiOBHm_Chr1g0337831
rosa_laevigata	RLG00000015780 RLG00000029499 RLG00000029520 RLG00000029773
rosa_multiflora	Rmu_sc0002899.1_g000001 Rmu_sc0003367.1_g000022 Rmu_sc0006537.1_g000039
rosa_roxburghii	Rroxscaffold_1G00022150 Rroxscaffold_4G00328560
rosa_samantha	Rh1AG111900 Rh1CG099600 Rh1CG107600 Rh1CG108700 Rh1DG106800 Rh1DG115000 Rh1DG116400 Rh2AG020700 Rh2AG020800 Rh2CG021700 Rh2CG158100 Rh2DG021400 Rh2DG021500 Rh7AG065400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	236
AciI	CCGC	3 cut(s)	45, 185, 188
AclWI	GGATC	1 cut(s)	303
AcsI	RAATTY	2 cut(s)	96, 262
AfaI	GTAC	1 cut(s)	286
AfiI	CCNNNNNNNGG	1 cut(s)	368
AflIII	ACRYGT	1 cut(s)	287
AgsI	TTSAA	1 cut(s)	383
AjiI	CACGTC	1 cut(s)	290
AluBI	AGCT	2 cut(s)	19, 419
AluI	AGCT	2 cut(s)	19, 419
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	2 cut(s)	70, 79
Alw44I	GTGCAC	1 cut(s)	56
AlwI	GGATC	1 cut(s)	303
AoxI	GGCC	1 cut(s)	425
ApaLI	GTGCAC	1 cut(s)	56
ApeKI	GCWGC	2 cut(s)	227, 335
ApoI	RAATTY	2 cut(s)	96, 262
AseI	ATTAAT	1 cut(s)	159
AspS9I	GGNCC	1 cut(s)	426
AsuC2I	CCSGG	1 cut(s)	125
AsuII	TTCGAA	1 cut(s)	266
BaeGI	GKGCMC	1 cut(s)	60
BanI	GGYRCC	1 cut(s)	236
BarI	GAAGNNNNNNTAC	2 cut(s)	98, 130
BauI	CACGAG	1 cut(s)	216
BbsI	GAAGAC	1 cut(s)	113
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	2 cut(s)	214, 322
BccI	CCATC	1 cut(s)	125
BceAI	ACGGC	1 cut(s)	365
BcnI	CCSGG	1 cut(s)	125
BcoDI	GTCTC	2 cut(s)	70, 79
BisI	GCNGC	4 cut(s)	186, 189, 228, 336
BlsI	GCNGC	4 cut(s)	187, 190, 229, 337
Bme1390I	CCNGG	1 cut(s)	125
BmgBI	CACGTC	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	426
BmiI	GGNNCC	1 cut(s)	238
BmrFI	CCNGG	1 cut(s)	125
BmsI	GCATC	1 cut(s)	238
BpiI	GAAGAC	1 cut(s)	113
Bpu10I	CCTNAGC	1 cut(s)	67
Bpu14I	TTCGAA	1 cut(s)	266
BpuMI	CCSGG	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
BseDI	CCNNGG	1 cut(s)	175
BseGI	GGATG	1 cut(s)	133
BseLI	CCNNNNNNNGG	1 cut(s)	368
BseSI	GKGCMC	1 cut(s)	60
BseXI	GCAGC	2 cut(s)	214, 322
BshFI	GGCC	1 cut(s)	427
BshNI	GGYRCC	1 cut(s)	236
BsiHKAI	GWGCWC	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	124
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmAI	GTCTC	2 cut(s)	70, 79
BsnI	GGCC	1 cut(s)	427
Bsp119I	TTCGAA	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp1407I	TGTACA	1 cut(s)	284
Bsp143I	GATC	1 cut(s)	295
BspACI	CCGC	3 cut(s)	45, 185, 188
BspANI	GGCC	1 cut(s)	427
BspLI	GGNNCC	1 cut(s)	238
BspPI	GGATC	1 cut(s)	303
BspT104I	TTCGAA	1 cut(s)	266
BspT107I	GGYRCC	1 cut(s)	236
BsrGI	TGTACA	1 cut(s)	284
BssECI	CCNNGG	1 cut(s)	175
BssMI	GATC	1 cut(s)	295
BssSI	CACGAG	1 cut(s)	216
BssT1I	CCWWGG	1 cut(s)	175
Bst2BI	CACGAG	1 cut(s)	216
Bst4CI	ACNGT	1 cut(s)	11
BstAPI	GCANNNNNTGC	1 cut(s)	236
BstAUI	TGTACA	1 cut(s)	284
BstBI	TTCGAA	1 cut(s)	266
BstDEI	CTNAG	3 cut(s)	23, 67, 299
BstF5I	GGATG	1 cut(s)	133
BstKTI	GATC	1 cut(s)	298
BstMAI	GTCTC	2 cut(s)	70, 79
BstMBI	GATC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstSCI	CCNGG	1 cut(s)	123
BstSLI	GKGCMC	1 cut(s)	60
BstV1I	GCAGC	2 cut(s)	214, 322
BstV2I	GAAGAC	1 cut(s)	113
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
BsuRI	GGCC	1 cut(s)	427
BtrI	CACGTC	1 cut(s)	290
BtsCI	GGATG	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	426
Csp6I	GTAC	1 cut(s)	285
CviJI	RGCY	5 cut(s)	19, 66, 227, 419, 427
CviKI_1	RGCY	5 cut(s)	19, 66, 227, 419, 427
CviQI	GTAC	1 cut(s)	285
DdeI	CTNAG	3 cut(s)	23, 67, 299
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
DraI	TTTAAA	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	175
Eco32I	GATATC	1 cut(s)	213
EcoRV	GATATC	1 cut(s)	213
EcoT14I	CCWWGG	1 cut(s)	175
ErhI	CCWWGG	1 cut(s)	175
FaiI	YATR	2 cut(s)	115, 364
Fnu4HI	GCNGC	4 cut(s)	186, 189, 228, 336
FokI	GGATG	1 cut(s)	140
Fsp4HI	GCNGC	4 cut(s)	186, 189, 228, 336
GluI	GCNGC	4 cut(s)	186, 189, 228, 336
HaeIII	GGCC	1 cut(s)	427
HapII	CCGG	1 cut(s)	124
HpaII	CCGG	1 cut(s)	124
Hpy166II	GTNNAC	2 cut(s)	58, 287
Hpy188I	TCNGA	2 cut(s)	210, 247
Hpy188III	TCNNGA	3 cut(s)	216, 293, 317
Hpy8I	GTNNAC	2 cut(s)	58, 287
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	3 cut(s)	213, 250, 368
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4IV	ACGT	1 cut(s)	289
HpyCH4V	TGCA	4 cut(s)	58, 230, 256, 276
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	3 cut(s)	23, 67, 299
HpySE526I	ACGT	1 cut(s)	289
Kzo9I	GATC	1 cut(s)	295
LpnPI	CCDG	6 cut(s)	134, 137, 209, 266, 278, 302
Lsp1109I	GCAGC	2 cut(s)	214, 322
LweI	GCATC	1 cut(s)	238
MaeII	ACGT	1 cut(s)	289
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MboII	GAAGA	2 cut(s)	118, 384
MflI	RGATCY	1 cut(s)	295
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	3 cut(s)	96, 168, 262
MnlI	CCTC	1 cut(s)	210
MseI	TTAA	2 cut(s)	50, 159
MspI	CCGG	1 cut(s)	124
MspR9I	CCNGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	236
NciI	CCSGG	1 cut(s)	125
NdeII	GATC	1 cut(s)	295
NlaIV	GGNNCC	1 cut(s)	238
NspV	TTCGAA	1 cut(s)	266
PkrI	GCNGC	4 cut(s)	187, 190, 229, 337
PshBI	ATTAAT	1 cut(s)	159
PspN4I	GGNNCC	1 cut(s)	238
PspPI	GGNCC	1 cut(s)	426
PsuI	RGATCY	1 cut(s)	295
RsaI	GTAC	1 cut(s)	286
RsaNI	GTAC	1 cut(s)	285
SaqAI	TTAA	2 cut(s)	50, 159
SatI	GCNGC	4 cut(s)	186, 189, 228, 336
Sau3AI	GATC	1 cut(s)	295
Sau96I	GGNCC	1 cut(s)	426
ScrFI	CCNGG	1 cut(s)	125
SduI	GDGCHC	1 cut(s)	60
SetI	ASST	6 cut(s)	21, 153, 181, 202, 292, 421
SfaNI	GCATC	1 cut(s)	238
SfuI	TTCGAA	1 cut(s)	266
Sse9I	AATT	3 cut(s)	96, 168, 262
SsiI	CCGC	3 cut(s)	45, 185, 188
StyD4I	CCNGG	1 cut(s)	123
StyI	CCWWGG	1 cut(s)	175
TaaI	ACNGT	1 cut(s)	11
TaiI	ACGT	1 cut(s)	292
TaqI	TCGA	1 cut(s)	266
TasI	AATT	3 cut(s)	96, 168, 262
TatI	WGTACW	1 cut(s)	284
TauI	GCSGC	2 cut(s)	188, 191
Tru1I	TTAA	2 cut(s)	50, 159
Tru9I	TTAA	2 cut(s)	50, 159
TseI	GCWGC	2 cut(s)	227, 335
TspDTI	ATGAA	1 cut(s)	17
VneI	GTGCAC	1 cut(s)	56
VspI	ATTAAT	1 cut(s)	159
XapI	RAATTY	2 cut(s)	96, 262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.