Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003367.1

Orthogroup ID

OG0007544

Physical Location & Seq

Genomic Coordinates Reverse (-)

105954 .. 106343

Gene Structure 390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003367.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

atgactcttaattttctcgcaggagcaccctttcagctcctgtccgatggggttaagtttgtgcttgagaatactaagatcttcaagactcaactgaagctgctggaatgcactctaagaaaactccagccacatgttgttgagaagctaagacaacacaacttgcatctcagcctttcatccggatacttggaagagctagagaggaaaatgaatgactgtgtagagctccttgaccaattgtcaagtgttagtgttctaaatctgcatgtatgcggctatttcggaaggagatatggagaagactttgaagatttaaacctggagcttcaaattctgctaggaaggcttaaggtggagtcaataagcacgaatggggttgttgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

129

Amino Acids

14.7

Weight (kDa)

6.07

Isoelectric Point (pI)

34.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007544)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0337761 RchiOBHm_Chr1g0337831
rosa_laevigata	RLG00000015780 RLG00000029499 RLG00000029520 RLG00000029773
rosa_multiflora	Rmu_sc0002899.1_g000001 Rmu_sc0003367.1_g000022 Rmu_sc0006537.1_g000039
rosa_roxburghii	Rroxscaffold_1G00022150 Rroxscaffold_4G00328560
rosa_samantha	Rh1AG111900 Rh1CG099600 Rh1CG107600 Rh1CG108700 Rh1DG106800 Rh1DG115000 Rh1DG116400 Rh2AG020700 Rh2AG020800 Rh2CG021700 Rh2CG158100 Rh2DG021400 Rh2DG021500 Rh7AG065400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	182
AciI	CCGC	1 cut(s)	276
AcsI	RAATTY	1 cut(s)	333
AcuI	CTGAAG	1 cut(s)	116
AflII	CTTAAG	1 cut(s)	350
AflIII	ACRYGT	1 cut(s)	133
AgsI	TTSAA	3 cut(s)	85, 311, 332
AhdI	GACNNNNNGTC	1 cut(s)	241
AjnI	CCWGG	1 cut(s)	321
AluBI	AGCT	6 cut(s)	37, 100, 148, 199, 229, 328
AluI	AGCT	6 cut(s)	37, 100, 148, 199, 229, 328
Alw21I	GWGCWC	2 cut(s)	28, 231
AlwNI	CAGNNNCTG	1 cut(s)	40
Aor13HI	TCCGGA	1 cut(s)	182
ApeKI	GCWGC	1 cut(s)	100
ApoI	RAATTY	1 cut(s)	333
BanII	GRGCYC	1 cut(s)	231
BbsI	GAAGAC	1 cut(s)	309
Bbv12I	GWGCWC	2 cut(s)	28, 231
BbvI	GCAGC	1 cut(s)	87
BccI	CCATC	1 cut(s)	41
BciT130I	CCWGG	1 cut(s)	323
BciVI	GTATCC	1 cut(s)	179
BfaI	CTAG	2 cut(s)	200, 341
BfrI	CTTAAG	1 cut(s)	350
BfuI	GTATCC	1 cut(s)	179
BglII	AGATCT	1 cut(s)	78
BisI	GCNGC	2 cut(s)	101, 277
BlsI	GCNGC	2 cut(s)	102, 278
Bme1390I	CCNGG	1 cut(s)	323
BmeRI	GACNNNNNGTC	1 cut(s)	241
BmrFI	CCNGG	1 cut(s)	323
BmsI	GCATC	1 cut(s)	175
BpiI	GAAGAC	1 cut(s)	309
BpmI	CTGGAG	2 cut(s)	110, 344
BpuEI	CTTGAG	1 cut(s)	86
BsaWI	WCCGGW	1 cut(s)	182
BseAI	TCCGGA	1 cut(s)	182
BseBI	CCWGG	1 cut(s)	323
BseGI	GGATG	1 cut(s)	179
BseMII	CTCAG	1 cut(s)	184
BseXI	GCAGC	1 cut(s)	87
BsiHKAI	GWGCWC	2 cut(s)	28, 231
BsiSI	CCGG	1 cut(s)	183
BsmI	GAATGC	1 cut(s)	113
Bsp1286I	GDGCHC	2 cut(s)	28, 231
Bsp13I	TCCGGA	1 cut(s)	182
Bsp143I	GATC	1 cut(s)	78
BspACI	CCGC	1 cut(s)	276
BspCNI	CTCAG	1 cut(s)	183
BspEI	TCCGGA	1 cut(s)	182
BspQI	GCTCTTC	1 cut(s)	189
BspTI	CTTAAG	1 cut(s)	350
BssMI	GATC	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	323
Bst4CI	ACNGT	1 cut(s)	221
Bst6I	CTCTTC	1 cut(s)	189
BstAFI	CTTAAG	1 cut(s)	350
BstDEI	CTNAG	4 cut(s)	75, 116, 149, 170
BstF5I	GGATG	1 cut(s)	179
BstKTI	GATC	1 cut(s)	81
BstMBI	GATC	1 cut(s)	78
BstMWI	GCNNNNNNNGC	1 cut(s)	346
BstNI	CCWGG	1 cut(s)	323
BstNSI	RCATGY	2 cut(s)	137, 272
BstSCI	CCNGG	1 cut(s)	321
BstV1I	GCAGC	1 cut(s)	87
BstV2I	GAAGAC	1 cut(s)	309
BstX2I	RGATCY	1 cut(s)	78
BstYI	RGATCY	1 cut(s)	78
BsuI	GTATCC	1 cut(s)	179
BtsCI	GGATG	1 cut(s)	179
CaiI	CAGNNNCTG	1 cut(s)	40
CviAII	CATG	2 cut(s)	134, 269
DdeI	CTNAG	4 cut(s)	75, 116, 149, 170
DpnI	GATC	1 cut(s)	80
DpnII	GATC	1 cut(s)	78
DraI	TTTAAA	1 cut(s)	318
DriI	GACNNNNNGTC	1 cut(s)	241
Eam1104I	CTCTTC	1 cut(s)	189
Eam1105I	GACNNNNNGTC	1 cut(s)	241
EarI	CTCTTC	1 cut(s)	189
Ecl136II	GAGCTC	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	231
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	116
EcoICRI	GAGCTC	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	321
EcoT38I	GRGCYC	1 cut(s)	231
FaeI	CATG	2 cut(s)	137, 272
FaiI	YATR	4 cut(s)	135, 270, 274, 297
FatI	CATG	2 cut(s)	133, 268
Fnu4HI	GCNGC	2 cut(s)	101, 277
FokI	GGATG	1 cut(s)	166
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	2 cut(s)	101, 277
FspBI	CTAG	2 cut(s)	200, 341
GluI	GCNGC	2 cut(s)	101, 277
GsuI	CTGGAG	2 cut(s)	110, 344
HapII	CCGG	1 cut(s)	183
Hin1II	CATG	2 cut(s)	137, 272
HinfI	GANTC	3 cut(s)	4, 88, 359
HpaII	CCGG	1 cut(s)	183
Hpy188I	TCNGA	2 cut(s)	46, 287
Hpy188III	TCNNGA	2 cut(s)	85, 183
HpyAV	CCTTC	2 cut(s)	282, 339
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4V	TGCA	3 cut(s)	111, 166, 268
HpyF10VI	GCNNNNNNNGC	1 cut(s)	346
HpyF3I	CTNAG	4 cut(s)	75, 116, 149, 170
Hsp92II	CATG	2 cut(s)	137, 272
Kpn2I	TCCGGA	1 cut(s)	182
Kzo9I	GATC	1 cut(s)	78
LguI	GCTCTTC	1 cut(s)	189
LmnI	GCTCC	4 cut(s)	23, 42, 234, 325
LpnPI	CCDG	7 cut(s)	6, 53, 89, 140, 196, 308, 335
Lsp1109I	GCAGC	1 cut(s)	87
LweI	GCATC	1 cut(s)	175
MaeI	CTAG	2 cut(s)	200, 341
MalI	GATC	1 cut(s)	80
MboI	GATC	1 cut(s)	78
MboII	GAAGA	4 cut(s)	73, 206, 314, 323
MfeI	CAATTG	1 cut(s)	239
MflI	RGATCY	1 cut(s)	78
MhlI	GDGCHC	2 cut(s)	28, 231
MluCI	AATT	3 cut(s)	10, 239, 333
MlyI	GAGTC	2 cut(s)	82, 368
MnlI	CCTC	1 cut(s)	198
MroI	TCCGGA	1 cut(s)	182
MseI	TTAA	4 cut(s)	9, 54, 317, 351
MspCI	CTTAAG	1 cut(s)	350
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	323
MunI	CAATTG	1 cut(s)	239
Mva1269I	GAATGC	1 cut(s)	113
MvaI	CCWGG	1 cut(s)	323
MwoI	GCNNNNNNNGC	1 cut(s)	346
NdeII	GATC	1 cut(s)	78
NlaIII	CATG	2 cut(s)	137, 272
NspI	RCATGY	2 cut(s)	137, 272
PciI	ACATGT	1 cut(s)	133
PciSI	GCTCTTC	1 cut(s)	189
PctI	GAATGC	1 cut(s)	113
PkrI	GCNGC	2 cut(s)	102, 278
PleI	GAGTC	2 cut(s)	82, 367
PpsI	GAGTC	2 cut(s)	82, 367
PscI	ACATGT	1 cut(s)	133
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	321
PstNI	CAGNNNCTG	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	78
SacI	GAGCTC	1 cut(s)	231
SapI	GCTCTTC	1 cut(s)	189
SaqAI	TTAA	4 cut(s)	9, 54, 317, 351
SatI	GCNGC	2 cut(s)	101, 277
Sau3AI	GATC	1 cut(s)	78
SchI	GAGTC	2 cut(s)	82, 368
ScrFI	CCNGG	1 cut(s)	323
SduI	GDGCHC	2 cut(s)	28, 231
SetI	ASST	8 cut(s)	39, 102, 150, 201, 231, 324, 330, 357
SfaNI	GCATC	1 cut(s)	175
SmlI	CTYRAG	2 cut(s)	65, 350
SmoI	CTYRAG	2 cut(s)	65, 350
Sse9I	AATT	3 cut(s)	10, 239, 333
SsiI	CCGC	1 cut(s)	276
SspMI	CTAG	2 cut(s)	200, 341
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	221
TasI	AATT	3 cut(s)	10, 239, 333
TauI	GCSGC	1 cut(s)	279
Tru1I	TTAA	4 cut(s)	9, 54, 317, 351
Tru9I	TTAA	4 cut(s)	9, 54, 317, 351
TseI	GCWGC	1 cut(s)	100
TspDTI	ATGAA	2 cut(s)	168, 227
Vha464I	CTTAAG	1 cut(s)	350
XapI	RAATTY	1 cut(s)	333
XceI	RCATGY	2 cut(s)	137, 272
XspI	CTAG	2 cut(s)	200, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.