Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007544

Physical Location & Seq

Genomic Coordinates Forward (+)

1513113 .. 1515913

Gene Structure 2801 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG020800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGAAGCGGCAGCCGACGGCGGAGAAGACACACGCTTTTACCCCTGGAATCGCATTTAGCTTTGATTGTTCTTTAAGGTTCTTCCTCCCTCTTCGCCTCATTTTCGTCGTTCTTCAGGTTGCACCAGATATGGCTCTTGATTTTTTGGGAGGAGCACCCTTTCAACTGATTTATGATGGGGTGAAGCTCGCACTTCAGAACTCGAAAAGCTTCAAGACTCAGTCGAAGAACCTGGAATTCACTTTAAGAGCACTTCAGCCAGCAGCAGTGGAGCAGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

93

Amino Acids

10.4

Weight (kDa)

9.36

Isoelectric Point (pI)

52.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007544)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0337761 RchiOBHm_Chr1g0337831
rosa_laevigata	RLG00000015780 RLG00000029499 RLG00000029520 RLG00000029773
rosa_multiflora	Rmu_sc0002899.1_g000001 Rmu_sc0003367.1_g000022 Rmu_sc0006537.1_g000039
rosa_roxburghii	Rroxscaffold_1G00022150 Rroxscaffold_4G00328560
rosa_samantha	Rh1AG111900 Rh1CG099600 Rh1CG107600 Rh1CG108700 Rh1DG106800 Rh1DG115000 Rh1DG116400 Rh2AG020700 Rh2AG020800 Rh2CG021700 Rh2CG158100 Rh2DG021400 Rh2DG021500 Rh7AG065400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	7, 20
AcsI	RAATTY	1 cut(s)	236
AcuI	CTGAAG	3 cut(s)	98, 179, 239
AgsI	TTSAA	2 cut(s)	164, 214
AjnI	CCWGG	2 cut(s)	43, 231
AluBI	AGCT	4 cut(s)	60, 187, 210, 277
AluI	AGCT	4 cut(s)	60, 187, 210, 277
Alw21I	GWGCWC	2 cut(s)	157, 253
ApeKI	GCWGC	3 cut(s)	10, 263, 274
ApoI	RAATTY	1 cut(s)	236
Asp700I	GAANNNNTTC	1 cut(s)	209
AsuHPI	GGTGA	1 cut(s)	193
BbsI	GAAGAC	1 cut(s)	32
Bbv12I	GWGCWC	2 cut(s)	157, 253
BbvI	GCAGC	2 cut(s)	22, 275
BccI	CCATC	1 cut(s)	170
BceAI	ACGGC	1 cut(s)	33
BciT130I	CCWGG	2 cut(s)	45, 233
BisI	GCNGC	4 cut(s)	8, 11, 264, 275
BlsI	GCNGC	4 cut(s)	9, 12, 265, 276
Bme1390I	CCNGG	2 cut(s)	45, 233
BmrFI	CCNGG	2 cut(s)	45, 233
BpiI	GAAGAC	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	43
BseBI	CCWGG	2 cut(s)	45, 233
BseDI	CCNNGG	1 cut(s)	43
BseMII	CTCAG	1 cut(s)	233
BseRI	GAGGAG	1 cut(s)	165
BseXI	GCAGC	2 cut(s)	22, 275
BsiHKAI	GWGCWC	2 cut(s)	157, 253
Bsp1286I	GDGCHC	2 cut(s)	157, 253
BspACI	CCGC	2 cut(s)	7, 20
BspCNI	CTCAG	1 cut(s)	232
BssECI	CCNNGG	1 cut(s)	43
Bst2UI	CCWGG	2 cut(s)	45, 233
Bst6I	CTCTTC	1 cut(s)	96
BstC8I	GCNNGC	2 cut(s)	189, 261
BstDEI	CTNAG	1 cut(s)	219
BstNI	CCWGG	2 cut(s)	45, 233
BstSCI	CCNGG	2 cut(s)	43, 231
BstV1I	GCAGC	2 cut(s)	22, 275
BstV2I	GAAGAC	1 cut(s)	32
BtsI	GCAGTG	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	273
Cac8I	GCNNGC	2 cut(s)	189, 261
CviJI	RGCY	7 cut(s)	13, 60, 134, 187, 210, 259, 277
CviKI_1	RGCY	7 cut(s)	13, 60, 134, 187, 210, 259, 277
DdeI	CTNAG	1 cut(s)	219
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
EciI	GGCGGA	1 cut(s)	35
Eco57I	CTGAAG	3 cut(s)	98, 179, 239
EcoRI	GAATTC	1 cut(s)	236
EcoRII	CCWGG	2 cut(s)	43, 231
FaiI	YATR	2 cut(s)	131, 174
Fnu4HI	GCNGC	4 cut(s)	8, 11, 264, 275
Fsp4HI	GCNGC	4 cut(s)	8, 11, 264, 275
GluI	GCNGC	4 cut(s)	8, 11, 264, 275
HindIII	AAGCTT	1 cut(s)	208
HinfI	GANTC	2 cut(s)	48, 217
HphI	GGTGA	1 cut(s)	193
Hpy188I	TCNGA	2 cut(s)	198, 281
Hpy188III	TCNNGA	2 cut(s)	137, 214
Hpy99I	CGWCG	2 cut(s)	19, 110
HpyCH4V	TGCA	1 cut(s)	122
HpyF3I	CTNAG	1 cut(s)	219
LmnI	GCTCC	2 cut(s)	152, 271
LpnPI	CCDG	7 cut(s)	30, 57, 101, 138, 218, 245, 273
Lsp1109I	GCAGC	2 cut(s)	22, 275
MboII	GAAGA	5 cut(s)	37, 73, 83, 104, 238
MhlI	GDGCHC	2 cut(s)	157, 253
MluCI	AATT	1 cut(s)	236
MlyI	GAGTC	1 cut(s)	211
MnlI	CCTC	4 cut(s)	95, 99, 107, 143
MroXI	GAANNNNTTC	1 cut(s)	209
MseI	TTAA	2 cut(s)	74, 245
MspR9I	CCNGG	2 cut(s)	45, 233
MvaI	CCWGG	2 cut(s)	45, 233
PdmI	GAANNNNTTC	1 cut(s)	209
PfeI	GAWTC	1 cut(s)	48
PflFI	GACNNNGTC	1 cut(s)	220
PkrI	GCNGC	4 cut(s)	9, 12, 265, 276
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
Psp6I	CCWGG	2 cut(s)	43, 231
PspGI	CCWGG	2 cut(s)	43, 231
PsyI	GACNNNGTC	1 cut(s)	220
SaqAI	TTAA	2 cut(s)	74, 245
SatI	GCNGC	4 cut(s)	8, 11, 264, 275
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	2 cut(s)	45, 233
SduI	GDGCHC	2 cut(s)	157, 253
SetI	ASST	7 cut(s)	62, 80, 120, 189, 212, 234, 279
Sse9I	AATT	1 cut(s)	236
SsiI	CCGC	2 cut(s)	7, 20
StyD4I	CCNGG	2 cut(s)	43, 231
TaqI	TCGA	2 cut(s)	203, 224
TasI	AATT	1 cut(s)	236
TauI	GCSGC	1 cut(s)	10
TfiI	GAWTC	1 cut(s)	48
Tru1I	TTAA	2 cut(s)	74, 245
Tru9I	TTAA	2 cut(s)	74, 245
TscAI	CASTG	1 cut(s)	273
TseI	GCWGC	3 cut(s)	10, 263, 274
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	273
Tth111I	GACNNNGTC	1 cut(s)	220
XapI	RAATTY	1 cut(s)	236
XmnI	GAANNNNTTC	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.