Rroxscaffold_4G00328560

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0007544
Physical Location & Seq
Reverse (-)
61595374 .. 61596193
820 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00328560.1

Sequence Viewer

Length: 432 bp
ATGTCGCTTACTTTGACAACTCGCAGTTGGTCGAATGCACAATTGCGGGTATCATCTAACCAAGAGCTTACTTTTGTCCTAAATCCTAATAGCTCCATCTTGCTGCCGATTCTACACCAAGGTGAAAGCTTCTACGGCATCGAATCTGAAATTTCGGAAGAAGCTTATAGAAGCCATGTAGCAAACCCACTAAGCACCGATGACAAGTGGATTCCACCGAAGCCTCCCTTCCTCAAACAAAATGTTGATGCTGCAATTGACCATAAGAGGAGTAAAGTTGGGTTGGGTGGAGTGGTCGGAGATGAGAATGGAAGAGTTAAAGGGGCATTTATGCATAATATGTTGGGATGCCTTTCAGCCCACTCTAGTGAAGCCTTAGCTGTTCTATTTGGTATGAGGTTTTGCTTGATGGAAGAGTTTAAGCTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

143

Amino Acids

15.83

Weight (kDa)

6.51

Isoelectric Point (pI)

56.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 81 - 140 2.5e-07 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 46
AcsI RAATTY 1 cut(s) 150
AleI CACNNNNGTG 2 cut(s) 120, 366
AluBI AGCT 6 cut(s) 67, 93, 129, 164, 380, 424
AluI AGCT 6 cut(s) 67, 93, 129, 164, 380, 424
ApeKI GCWGC 2 cut(s) 103, 251
ApoI RAATTY 1 cut(s) 150
AsuHPI GGTGA 1 cut(s) 134
BbvI GCAGC 2 cut(s) 90, 238
BccI CCATC 2 cut(s) 104, 403
BceAI ACGGC 1 cut(s) 151
BfaI CTAG 1 cut(s) 366
BisI GCNGC 2 cut(s) 104, 252
BlsI GCNGC 2 cut(s) 105, 253
BmsI GCATC 3 cut(s) 147, 238, 338
Bpu10I CCTNAGC 1 cut(s) 376
BsaJI CCNNGG 1 cut(s) 118
BseDI CCNNGG 1 cut(s) 118
BseGI GGATG 1 cut(s) 353
BseRI GAGGAG 1 cut(s) 283
BseXI GCAGC 2 cut(s) 90, 238
BsmI GAATGC 1 cut(s) 40
BspACI CCGC 1 cut(s) 46
BssECI CCNNGG 1 cut(s) 118
BssT1I CCWWGG 1 cut(s) 118
Bst6I CTCTTC 2 cut(s) 307, 408
BstDEI CTNAG 2 cut(s) 191, 376
BstF5I GGATG 1 cut(s) 353
BstMWI GCNNNNNNNGC 1 cut(s) 135
BstV1I GCAGC 2 cut(s) 90, 238
BtsCI GGATG 1 cut(s) 353
CviAII CATG 1 cut(s) 176
DdeI CTNAG 2 cut(s) 191, 376
Eam1104I CTCTTC 2 cut(s) 307, 408
EarI CTCTTC 2 cut(s) 307, 408
Eco130I CCWWGG 1 cut(s) 118
EcoT14I CCWWGG 1 cut(s) 118
EcoT22I ATGCAT 1 cut(s) 336
ErhI CCWWGG 1 cut(s) 118
FaeI CATG 1 cut(s) 179
FaiI YATR 7 cut(s) 168, 177, 264, 332, 336, 341, 395
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FatI CATG 1 cut(s) 175
FauI CCCGC 1 cut(s) 39
Fnu4HI GCNGC 2 cut(s) 104, 252
FokI GGATG 1 cut(s) 360
Fsp4HI GCNGC 2 cut(s) 104, 252
FspBI CTAG 1 cut(s) 366
GluI GCNGC 2 cut(s) 104, 252
Hin1II CATG 1 cut(s) 179
HindIII AAGCTT 2 cut(s) 127, 162
HinfI GANTC 3 cut(s) 109, 143, 211
HphI GGTGA 1 cut(s) 134
Hpy188I TCNGA 3 cut(s) 148, 157, 299
HpyAV CCTTC 1 cut(s) 238
HpyCH4V TGCA 3 cut(s) 38, 254, 334
HpyF10VI GCNNNNNNNGC 1 cut(s) 135
HpyF3I CTNAG 2 cut(s) 191, 376
Hsp92II CATG 1 cut(s) 179
LmnI GCTCC 1 cut(s) 98
Lsp1109I GCAGC 2 cut(s) 90, 238
LweI GCATC 3 cut(s) 147, 238, 338
MaeI CTAG 1 cut(s) 366
MboII GAAGA 3 cut(s) 170, 324, 425
MfeI CAATTG 2 cut(s) 41, 255
MluCI AATT 3 cut(s) 41, 150, 255
MmeI TCCRAC 1 cut(s) 277
MnlI CCTC 4 cut(s) 234, 242, 261, 390
Mph1103I ATGCAT 1 cut(s) 336
MseI TTAA 2 cut(s) 318, 420
MslI CAYNNNNRTG 2 cut(s) 120, 366
MunI CAATTG 2 cut(s) 41, 255
Mva1269I GAATGC 1 cut(s) 40
MwoI GCNNNNNNNGC 1 cut(s) 135
NlaIII CATG 1 cut(s) 179
NsiI ATGCAT 1 cut(s) 336
OliI CACNNNNGTG 2 cut(s) 120, 366
PctI GAATGC 1 cut(s) 40
PfeI GAWTC 3 cut(s) 109, 143, 211
PkrI GCNGC 2 cut(s) 105, 253
RseI CAYNNNNRTG 2 cut(s) 120, 366
SaqAI TTAA 2 cut(s) 318, 420
SatI GCNGC 2 cut(s) 104, 252
SetI ASST 8 cut(s) 69, 95, 124, 131, 166, 382, 401, 426
SfaNI GCATC 3 cut(s) 147, 238, 338
SgeI CNNG 9 cut(s) 33, 59, 74, 112, 131, 188, 217, 378, 418
SmiMI CAYNNNNRTG 2 cut(s) 120, 366
Sse9I AATT 3 cut(s) 41, 150, 255
SsiI CCGC 1 cut(s) 46
SspMI CTAG 1 cut(s) 366
StyI CCWWGG 1 cut(s) 118
TaqI TCGA 2 cut(s) 32, 141
TasI AATT 3 cut(s) 41, 150, 255
TfiI GAWTC 3 cut(s) 109, 143, 211
Tru1I TTAA 2 cut(s) 318, 420
Tru9I TTAA 2 cut(s) 318, 420
TseI GCWGC 2 cut(s) 103, 251
XapI RAATTY 1 cut(s) 150
XspI CTAG 1 cut(s) 366
Zsp2I ATGCAT 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.