Rh1DG116400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0007544
Physical Location & Seq
Forward (+)
21256724 .. 21256948
225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG116400.1

Sequence Viewer

Length: 225 bp
ATGGTGGAAAATTTGGCGAAACAAGTAAATGATGTCTCGATGAATTTGGAGAAGGCAGAAGAGAGGGCCAATGAAATAAGAGCTCTGTTAGCTGGGCTTAATGGCAGTAGTCCAGGAGGAGGGGATGGGGCGGCTGCCCTCCTTGTAGACTTTAAGAATTTGATCGAAGCTCAAGGCGGTGAAGACTTTTCAACATCTTCTCTCAGCTTCTGGATAAAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

7.84

Weight (kDa)

4.41

Isoelectric Point (pI)

32.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 147
AciI CCGC 2 cut(s) 131, 177
AcsI RAATTY 4 cut(s) 10, 43, 157, 218
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 1 cut(s) 192
AjnI CCWGG 1 cut(s) 112
AluBI AGCT 4 cut(s) 83, 92, 170, 207
AluI AGCT 4 cut(s) 83, 92, 170, 207
Alw21I GWGCWC 1 cut(s) 85
Alw26I GTCTC 1 cut(s) 40
AlwNI CAGNNNCTG 1 cut(s) 210
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 1 cut(s) 134
ApoI RAATTY 4 cut(s) 10, 43, 157, 218
AspS9I GGNCC 1 cut(s) 66
AsuHPI GGTGA 1 cut(s) 191
BanII GRGCYC 1 cut(s) 85
BbsI GAAGAC 1 cut(s) 189
Bbv12I GWGCWC 1 cut(s) 85
BbvI GCAGC 1 cut(s) 121
BccI CCATC 1 cut(s) 119
BciT130I CCWGG 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 40
BisI GCNGC 2 cut(s) 132, 135
BlsI GCNGC 2 cut(s) 133, 136
Bme1390I CCNGG 1 cut(s) 114
BmgT120I GGNCC 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 114
BpiI GAAGAC 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 156
Bsc4I CCNNNNNNNGG 1 cut(s) 119
BseBI CCWGG 1 cut(s) 114
BseGI GGATG 1 cut(s) 130
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMII CTCAG 1 cut(s) 217
BseRI GAGGAG 1 cut(s) 132
BseXI GCAGC 1 cut(s) 121
BseYI CCCAGC 1 cut(s) 92
BshFI GGCC 1 cut(s) 68
BsiHKAI GWGCWC 1 cut(s) 85
BslI CCNNNNNNNGG 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 40
BsnI GGCC 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 85
Bsp143I GATC 1 cut(s) 162
BspACI CCGC 2 cut(s) 131, 177
BspANI GGCC 1 cut(s) 68
BspCNI CTCAG 1 cut(s) 216
BssMI GATC 1 cut(s) 162
Bst2UI CCWGG 1 cut(s) 114
Bst6I CTCTTC 1 cut(s) 54
BstDEI CTNAG 1 cut(s) 203
BstF5I GGATG 1 cut(s) 130
BstKTI GATC 1 cut(s) 165
BstMAI GTCTC 1 cut(s) 40
BstMBI GATC 1 cut(s) 162
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstNI CCWGG 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 112
BstV1I GCAGC 1 cut(s) 121
BstV2I GAAGAC 1 cut(s) 189
BsuRI GGCC 1 cut(s) 68
BtsCI GGATG 1 cut(s) 130
CaiI CAGNNNCTG 1 cut(s) 210
Cfr13I GGNCC 1 cut(s) 66
CviJI RGCY 7 cut(s) 68, 83, 92, 97, 134, 170, 207
CviKI_1 RGCY 7 cut(s) 68, 83, 92, 97, 134, 170, 207
DdeI CTNAG 1 cut(s) 203
DpnI GATC 1 cut(s) 164
DpnII GATC 1 cut(s) 162
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Ecl136II GAGCTC 1 cut(s) 83
Eco24I GRGCYC 1 cut(s) 85
Eco53kI GAGCTC 1 cut(s) 83
EcoICRI GAGCTC 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 112
EcoT38I GRGCYC 1 cut(s) 85
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 2 cut(s) 132, 135
FokI GGATG 1 cut(s) 137
FriOI GRGCYC 1 cut(s) 85
Fsp4HI GCNGC 2 cut(s) 132, 135
GluI GCNGC 2 cut(s) 132, 135
GsaI CCCAGC 1 cut(s) 96
HaeIII GGCC 1 cut(s) 68
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 1 cut(s) 148
Hpy188III TCNNGA 2 cut(s) 37, 211
Hpy8I GTNNAC 1 cut(s) 148
HpyAV CCTTC 1 cut(s) 46
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 1 cut(s) 203
Kzo9I GATC 1 cut(s) 162
LpnPI CCDG 4 cut(s) 78, 99, 126, 196
Lsp1109I GCAGC 1 cut(s) 121
MalI GATC 1 cut(s) 164
MboI GATC 1 cut(s) 162
MboII GAAGA 3 cut(s) 71, 189, 194
MhlI GDGCHC 1 cut(s) 85
MluCI AATT 4 cut(s) 10, 43, 157, 218
MnlI CCTC 4 cut(s) 57, 110, 113, 149
MseI TTAA 2 cut(s) 99, 153
MspR9I CCNGG 1 cut(s) 114
MvaI CCWGG 1 cut(s) 114
MwoI GCNNNNNNNGC 1 cut(s) 89
NdeII GATC 1 cut(s) 162
PfoI TCCNGGA 1 cut(s) 112
PkrI GCNGC 2 cut(s) 133, 136
Psp124BI GAGCTC 1 cut(s) 85
Psp6I CCWGG 1 cut(s) 112
PspFI CCCAGC 1 cut(s) 92
PspGI CCWGG 1 cut(s) 112
PspPI GGNCC 1 cut(s) 66
PstNI CAGNNNCTG 1 cut(s) 210
SacI GAGCTC 1 cut(s) 85
SaqAI TTAA 2 cut(s) 99, 153
SatI GCNGC 2 cut(s) 132, 135
Sau3AI GATC 1 cut(s) 162
Sau96I GGNCC 1 cut(s) 66
ScrFI CCNGG 1 cut(s) 114
SduI GDGCHC 1 cut(s) 85
SetI ASST 4 cut(s) 85, 94, 172, 209
SgeI CNNG 7 cut(s) 35, 49, 105, 125, 126, 155, 185
SmlI CTYRAG 1 cut(s) 171
SmoI CTYRAG 1 cut(s) 171
Sse9I AATT 4 cut(s) 10, 43, 157, 218
SsiI CCGC 2 cut(s) 131, 177
SstI GAGCTC 1 cut(s) 85
StyD4I CCNGG 1 cut(s) 112
TaqI TCGA 2 cut(s) 38, 165
TasI AATT 4 cut(s) 10, 43, 157, 218
TauI GCSGC 1 cut(s) 134
Tru1I TTAA 2 cut(s) 99, 153
Tru9I TTAA 2 cut(s) 99, 153
TseI GCWGC 1 cut(s) 134
TspDTI ATGAA 2 cut(s) 56, 87
XapI RAATTY 4 cut(s) 10, 43, 157, 218
XmiI GTMKAC 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.