Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003968

Physical Location & Seq

Genomic Coordinates Reverse (-)

652797 .. 656103

Gene Structure 3307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46061

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGAAACTGGAGGAACTTGAGAATATATTGGAACAATGTGCTGCTAAGCACATTCCTATGGTGGTTGCCAATCCTGATTTTTTTACTGTTGAGGCTAGAGCTTTGCGCGTAATGCCGGTCACAATCGGTCTTCCTCAGTCCTCACCTCTGCGGCTCTGCCTCTCAGCTCTCACAAGTCACAATCGGTCTCTTGCGTCTCTGTCCCAGCCTCCCAAGTACACCAAGGTGGTCTTGATTGGCGACTCCGGCGTCGGAAAGTCCAATCTCCTCTCCAGAAATGAGTTTGATTTGTGGGATTTGCCAAATGAAAGTCTGTATGATCAGAAGCCTGAAGAACCAGTTATCCCAGTAGTTTCCTCAACCAAAAGCACTCCACCAGCTGTCACACCCCTTTCTGCACCCAAGTCATCGAGTTTCTTTGCGGATTTCGGAATGGATAGCAGTTATCCCAAGAGAACTAGTTCAAACTCCTCAAAGGTGCAAGGAAAAAAATTTGAAGATGGAGGAATGGAGGAGCAGCTGCATGGCAGCAATAGCATGGAGCAGCTGCATGTCTTTTTAAACTGCTCTTGTTGTCTTGTTGAACATTGTTTCGATGGATTTATTTGCAACCTTGCTGCTAGTGCAGATTGCACTTTGCAGAATGGTTTATTGATCATCTATAAAGCAGACATGGCCTTAGTTGGTGTATCTATTGATTCTATTGCAGTGCGCGATTCCCTTCATCATGATACCAAGGGTGCAAATGCAGCTGCAGTCCAATCAGTTTTAATCACTGGTGGAATCCATGCAACTGAACTTGAACTTGGTAGTTTTGCAGGCGTAGCAGATTTATCTTCTGTGCAAGCTCTTGCTTCCAAATATGATGATTACCCATCGTATGTGTTACCTGCCTTTACTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2 Hydrolase_6 Hydrolase_like

Protein Analysis

301

Amino Acids

32.42

Weight (kDa)

5.14

Isoelectric Point (pI)

51.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003968)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0085051 RchiOBHm_Chr5g0037941
rosa_laevigata	RLG00000017994 RLG00000019454 RLG00000027093 RLG00000029383
rosa_multiflora	Rmu_sc0000509.1_g000001 Rmu_sc0003573.1_g000043 Rmu_sc0015807.1_g000003
rosa_roxburghii	Rroxscaffold_2G00129780 Rroxscaffold_6G00407110
rosa_rugosa	Rorug07G0294600 Rorug07G0319600
rosa_samantha	Rh1DG445800 Rh2AG168400 Rh2AG243600 Rh2AG243700 Rh2BG175400 Rh2BG201700 Rh2CG249000 Rh2DG173900 Rh2DG252100 Rh2DG252200 Rh3DG150400 Rh4AG146900 Rh4CG153500 Rh5AG355600 Rh5AG500800 Rh5AG500900 Rh5CG330400 Rh7BG445500 Rh7BG445600 Rh7BG445700
rosa_wichuraiana	Rw0G005140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	248
Acc36I	ACCTGC	1 cut(s)	898
AccII	CGCG	2 cut(s)	108, 714
AciI	CCGC	2 cut(s)	151, 422
AcsI	RAATTY	1 cut(s)	491
AcuI	CTGAAG	1 cut(s)	351
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	1 cut(s)	900
AgsI	TTSAA	4 cut(s)	465, 497, 584, 803
AhlI	ACTAGT	1 cut(s)	458
AjuI	GAANNNNNNNTTGG	2 cut(s)	789, 821
AleI	CACNNNNGTG	1 cut(s)	224
AloI	GAACNNNNNNTCC	2 cut(s)	327, 359
AluBI	AGCT	7 cut(s)	101, 167, 380, 520, 547, 752, 848
AluI	AGCT	7 cut(s)	101, 167, 380, 520, 547, 752, 848
Alw26I	GTCTC	2 cut(s)	192, 201
AoxI	GGCC	1 cut(s)	675
ApeKI	GCWGC	9 cut(s)	41, 517, 520, 528, 544, 547, 617, 749, 752
ApoI	RAATTY	1 cut(s)	491
Asp700I	GAANNNNTTC	1 cut(s)	460
AspLEI	GCGC	2 cut(s)	108, 714
AsuHPI	GGTGA	1 cut(s)	135
BbsI	GAAGAC	1 cut(s)	122
BbvI	GCAGC	9 cut(s)	28, 507, 529, 534, 540, 556, 604, 739, 761
BccI	CCATC	3 cut(s)	494, 590, 883
BclI	TGATCA	2 cut(s)	319, 654
BcoDI	GTCTC	2 cut(s)	192, 201
BcuI	ACTAGT	1 cut(s)	458
BfaI	CTAG	3 cut(s)	96, 459, 621
BfmI	CTRYAG	1 cut(s)	753
BfuAI	ACCTGC	1 cut(s)	898
BlpI	GCTNAGC	1 cut(s)	45
BmrI	ACTGGG	1 cut(s)	341
BmuI	ACTGGG	1 cut(s)	341
BpiI	GAAGAC	1 cut(s)	122
BpmI	CTGGAG	2 cut(s)	29, 256
Bpu1102I	GCTNAGC	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	38
BsaHI	GRCGYC	1 cut(s)	249
BsaI	GGTCTC	1 cut(s)	192
BsaJI	CCNNGG	2 cut(s)	222, 735
Bsc4I	CCNNNNNNNGG	1 cut(s)	900
Bse118I	RCCGGY	1 cut(s)	115
Bse1I	ACTGG	4 cut(s)	12, 338, 347, 781
BseDI	CCNNGG	2 cut(s)	222, 735
BseLI	CCNNNNNNNGG	1 cut(s)	900
BseMII	CTCAG	2 cut(s)	149, 177
BseNI	ACTGG	4 cut(s)	12, 338, 347, 781
BseRI	GAGGAG	3 cut(s)	257, 460, 527
BseXI	GCAGC	9 cut(s)	28, 507, 529, 534, 540, 556, 604, 739, 761
BseYI	CCCAGC	1 cut(s)	204
BsgI	GTGCAG	2 cut(s)	381, 645
Bsh1236I	CGCG	2 cut(s)	108, 714
BshFI	GGCC	1 cut(s)	677
BsiSI	CCGG	2 cut(s)	116, 246
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	1 cut(s)	900
BsmAI	GTCTC	2 cut(s)	192, 201
BsmBI	CGTCTC	1 cut(s)	201
BsmFI	GGGAC	1 cut(s)	187
BsnI	GGCC	1 cut(s)	677
Bso31I	GGTCTC	1 cut(s)	192
Bsp143I	GATC	2 cut(s)	319, 654
Bsp1720I	GCTNAGC	1 cut(s)	45
BspACI	CCGC	2 cut(s)	151, 422
BspANI	GGCC	1 cut(s)	677
BspCNI	CTCAG	2 cut(s)	148, 176
BspFNI	CGCG	2 cut(s)	108, 714
BspHI	TCATGA	1 cut(s)	727
BspMAI	CTGCAG	1 cut(s)	757
BspMI	ACCTGC	1 cut(s)	898
BspTNI	GGTCTC	1 cut(s)	192
BsrFI	RCCGGY	1 cut(s)	115
BsrI	ACTGG	4 cut(s)	12, 338, 347, 781
BssAI	RCCGGY	1 cut(s)	115
BssECI	CCNNGG	2 cut(s)	222, 735
BssMI	GATC	2 cut(s)	319, 654
BssNI	GRCGYC	1 cut(s)	249
BssT1I	CCWWGG	2 cut(s)	222, 735
Bst4CI	ACNGT	1 cut(s)	88
BstACI	GRCGYC	1 cut(s)	249
BstC8I	GCNNGC	2 cut(s)	820, 846
BstDEI	CTNAG	4 cut(s)	45, 135, 163, 679
BstFNI	CGCG	2 cut(s)	108, 714
BstHHI	GCGC	2 cut(s)	108, 714
BstKTI	GATC	2 cut(s)	322, 657
BstMAI	GTCTC	2 cut(s)	192, 201
BstMBI	GATC	2 cut(s)	319, 654
BstMWI	GCNNNNNNNGC	7 cut(s)	112, 246, 534, 623, 674, 749, 824
BstNSI	RCATGY	1 cut(s)	554
BstSFI	CTRYAG	1 cut(s)	753
BstUI	CGCG	2 cut(s)	108, 714
BstV1I	GCAGC	9 cut(s)	28, 507, 529, 534, 540, 556, 604, 739, 761
BstV2I	GAAGAC	1 cut(s)	122
BsuRI	GGCC	1 cut(s)	677
BtsI	GCAGTG	1 cut(s)	714
BtsIMutI	CAGTG	2 cut(s)	714, 774
BveI	ACCTGC	1 cut(s)	898
Cac8I	GCNNGC	2 cut(s)	820, 846
CciI	TCATGA	1 cut(s)	727
CfoI	GCGC	2 cut(s)	108, 714
Cfr10I	RCCGGY	1 cut(s)	115
CseI	GACGC	2 cut(s)	183, 238
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	6 cut(s)	524, 538, 551, 673, 728, 788
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	4 cut(s)	45, 135, 163, 679
DpnI	GATC	2 cut(s)	321, 656
DpnII	GATC	2 cut(s)	319, 654
DraI	TTTAAA	1 cut(s)	561
DrdI	GACNNNNNNGTC	1 cut(s)	248
DseDI	GACNNNNNNGTC	1 cut(s)	248
Eco130I	CCWWGG	2 cut(s)	222, 735
Eco31I	GGTCTC	1 cut(s)	192
Eco57I	CTGAAG	1 cut(s)	351
EcoT14I	CCWWGG	2 cut(s)	222, 735
ErhI	CCWWGG	2 cut(s)	222, 735
Esp3I	CGTCTC	1 cut(s)	201
FaeI	CATG	6 cut(s)	527, 541, 554, 676, 731, 791
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	6 cut(s)	523, 537, 550, 672, 727, 787
FbaI	TGATCA	2 cut(s)	319, 654
FspBI	CTAG	3 cut(s)	96, 459, 621
GlaI	GCGC	2 cut(s)	107, 713
GsaI	CCCAGC	1 cut(s)	208
GsuI	CTGGAG	2 cut(s)	29, 256
HaeIII	GGCC	1 cut(s)	677
HapII	CCGG	2 cut(s)	116, 246
HgaI	GACGC	2 cut(s)	183, 238
HhaI	GCGC	2 cut(s)	108, 714
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	6 cut(s)	527, 541, 554, 676, 731, 791
Hin6I	GCGC	2 cut(s)	106, 712
HinP1I	GCGC	2 cut(s)	106, 712
HinfI	GANTC	4 cut(s)	242, 698, 716, 783
HpaII	CCGG	2 cut(s)	116, 246
HphI	GGTGA	1 cut(s)	135
Hpy166II	GTNNAC	1 cut(s)	219
Hpy188I	TCNGA	3 cut(s)	254, 324, 431
Hpy188III	TCNNGA	4 cut(s)	74, 232, 273, 728
Hpy8I	GTNNAC	1 cut(s)	219
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	1 cut(s)	731
HpyCH4III	ACNGT	1 cut(s)	88
HpyF10VI	GCNNNNNNNGC	7 cut(s)	112, 246, 534, 623, 674, 749, 824
HpyF3I	CTNAG	4 cut(s)	45, 135, 163, 679
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	6 cut(s)	527, 541, 554, 676, 731, 791
HspAI	GCGC	2 cut(s)	106, 712
Ksp22I	TGATCA	2 cut(s)	319, 654
Kzo9I	GATC	2 cut(s)	319, 654
LmnI	GCTCC	2 cut(s)	514, 541
Lsp1109I	GCAGC	9 cut(s)	28, 507, 529, 534, 540, 556, 604, 739, 761
MaeI	CTAG	3 cut(s)	96, 459, 621
MaeIII	GTNAC	4 cut(s)	118, 176, 382, 885
MalI	GATC	2 cut(s)	321, 656
MboI	GATC	2 cut(s)	319, 654
MboII	GAAGA	4 cut(s)	122, 344, 509, 828
MluCI	AATT	1 cut(s)	491
MlyI	GAGTC	1 cut(s)	236
MmeI	TCCRAC	1 cut(s)	232
MroXI	GAANNNNTTC	1 cut(s)	460
MseI	TTAA	2 cut(s)	560, 770
MslI	CAYNNNNRTG	2 cut(s)	56, 224
MspA1I	CMGCKG	4 cut(s)	380, 520, 547, 752
MspI	CCGG	2 cut(s)	116, 246
MvnI	CGCG	2 cut(s)	108, 714
MwoI	GCNNNNNNNGC	7 cut(s)	112, 246, 534, 623, 674, 749, 824
NdeII	GATC	2 cut(s)	319, 654
NlaIII	CATG	6 cut(s)	527, 541, 554, 676, 731, 791
NmuCI	GTSAC	3 cut(s)	118, 176, 382
NspI	RCATGY	1 cut(s)	554
OliI	CACNNNNGTG	1 cut(s)	224
PagI	TCATGA	1 cut(s)	727
PdmI	GAANNNNTTC	1 cut(s)	460
PfeI	GAWTC	3 cut(s)	698, 716, 783
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
PspFI	CCCAGC	1 cut(s)	204
PstI	CTGCAG	1 cut(s)	757
PvuII	CAGCTG	4 cut(s)	380, 520, 547, 752
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
RseI	CAYNNNNRTG	2 cut(s)	56, 224
SaqAI	TTAA	2 cut(s)	560, 770
Sau3AI	GATC	2 cut(s)	319, 654
SchI	GAGTC	1 cut(s)	236
SfcI	CTRYAG	1 cut(s)	753
SmiMI	CAYNNNNRTG	2 cut(s)	56, 224
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
SpeI	ACTAGT	1 cut(s)	458
Sse9I	AATT	1 cut(s)	491
SsiI	CCGC	2 cut(s)	151, 422
SspMI	CTAG	3 cut(s)	96, 459, 621
StyI	CCWWGG	2 cut(s)	222, 735
TaaI	ACNGT	1 cut(s)	88
TaqI	TCGA	2 cut(s)	410, 594
TaqII	GACCGA	2 cut(s)	116, 174
TasI	AATT	1 cut(s)	491
TatI	WGTACW	1 cut(s)	216
TauI	GCSGC	1 cut(s)	154
TfiI	GAWTC	3 cut(s)	698, 716, 783
Tru1I	TTAA	2 cut(s)	560, 770
Tru9I	TTAA	2 cut(s)	560, 770
TscAI	CASTG	2 cut(s)	714, 781
TseFI	GTSAC	3 cut(s)	118, 176, 382
TseI	GCWGC	9 cut(s)	41, 517, 520, 528, 544, 547, 617, 749, 752
Tsp45I	GTSAC	3 cut(s)	118, 176, 382
TspDTI	ATGAA	3 cut(s)	17, 321, 713
TspRI	CASTG	2 cut(s)	714, 781
XapI	RAATTY	1 cut(s)	491
XceI	RCATGY	1 cut(s)	554
XmnI	GAANNNNTTC	1 cut(s)	460
XspI	CTAG	3 cut(s)	96, 459, 621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.