Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003573.1

Orthogroup ID

OG0003968

Physical Location & Seq

Genomic Coordinates Forward (+)

214169 .. 215531

Gene Structure 1363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003573.1_g000043.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

atgagtgtgaaggttataatgaagatgatgatgacaattaatgtacatgatagagtgaatatagatgaagatggaagtaattacgtggatagtgattatgagatattgcccggggatgaaggatatggtgaagatggacaagatgacttggaatatgaggagaatgttgataattgtgatgtatatgacgagtatgctaacatgggattcaatggtgaaatttctgaccatagtcatgatagtgaagaattgagggatttggtggaagaaattgaaagtgatgatgaagaaggtgttaaagtagaggttgcatgcggaaagaagcacaagggtaaaagggagacttggtcttgtcaattttggatatttgctagtgtaatcaagggtaaggaaccagaattgattatcaagtcaatcaatttgaatcacaagaattgtgaaacggtttcaagagtgaagttttgtacttctacatttgtagcaaaagagtatgtacaaatgtggaaagctgatccatttatgtctagaaaactcttccaagatatagtatctcaagattttagtcaaaccatttcacacaagcaggttataagagcaaggaggctagctgcacttatgaattctgggaatgaggcagaccaatataatctcttggaaacctatgttgaggtattaagacaatcaaacctatggtcaattattgaattggtaaccgatatggatggaggtgttaggaagtttaaaagattttatgtatgttttgatgcatgcaagaggggttggatggctggttgtagatttgttgtggggttggatggctgccatataaagacaaagtaccctggtcagttgctctcagccatgggaattgatgctaacaatgagatgtttcctatcgcttatgatgtggttgagatggagaattacgaaacttggtgttggttcctagagtacttgattggagattttgaaatgcaaaatgatttcagttatgtatttatgagtgataaacagaaagggctactagatgcggttaatgacttaatgtcaaacagtgaacatagacactgtgtaaggcatctacacaacaatttcaaagttaagaatcctgaaattgtgtttaagcatctactttggtcaactgctagggatactacaaagacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBD_Tnp_Mut MULE SWIM

Protein Analysis

388

Amino Acids

45.02

Weight (kDa)

4.9

Isoelectric Point (pI)

45.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003968)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0085051 RchiOBHm_Chr5g0037941
rosa_laevigata	RLG00000017994 RLG00000019454 RLG00000027093 RLG00000029383
rosa_multiflora	Rmu_sc0000509.1_g000001 Rmu_sc0003573.1_g000043 Rmu_sc0015807.1_g000003
rosa_roxburghii	Rroxscaffold_2G00129780 Rroxscaffold_6G00407110
rosa_rugosa	Rorug07G0294600 Rorug07G0319600
rosa_samantha	Rh1DG445800 Rh2AG168400 Rh2AG243600 Rh2AG243700 Rh2BG175400 Rh2BG201700 Rh2CG249000 Rh2DG173900 Rh2DG252100 Rh2DG252200 Rh3DG150400 Rh4AG146900 Rh4CG153500 Rh5AG355600 Rh5AG500800 Rh5AG500900 Rh5CG330400 Rh7BG445500 Rh7BG445600 Rh7BG445700
rosa_wichuraiana	Rw0G005140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	17, 590
Acc36I	ACCTGC	1 cut(s)	574
AciI	CCGC	2 cut(s)	315, 1031
AclWI	GGATC	1 cut(s)	506
AcsI	RAATTY	2 cut(s)	219, 619
AfaI	GTAC	5 cut(s)	45, 466, 495, 839, 953
AgsI	TTSAA	7 cut(s)	211, 275, 424, 450, 704, 971, 1096
AhdI	GACNNNNNGTC	1 cut(s)	1045
AjnI	CCWGG	1 cut(s)	841
AluBI	AGCT	2 cut(s)	509, 608
AluI	AGCT	2 cut(s)	509, 608
Alw26I	GTCTC	1 cut(s)	335
AlwI	GGATC	1 cut(s)	506
Ama87I	CYCGRG	1 cut(s)	110
ApeKI	GCWGC	2 cut(s)	608, 819
ApoI	RAATTY	2 cut(s)	219, 619
ArsI	GACNNNNNNTTYG	2 cut(s)	677, 709
AseI	ATTAAT	1 cut(s)	39
AsuC2I	CCSGG	2 cut(s)	111, 112
AsuHPI	GGTGA	2 cut(s)	140, 227
AsuNHI	GCTAGC	1 cut(s)	604
AvaI	CYCGRG	1 cut(s)	110
BbvI	GCAGC	2 cut(s)	595, 806
BccI	CCATC	6 cut(s)	65, 128, 716, 778, 809, 910
BciT130I	CCWGG	1 cut(s)	843
BciVI	GTATCC	1 cut(s)	1144
BcnI	CCSGG	2 cut(s)	111, 112
BcoDI	GTCTC	1 cut(s)	335
BfaI	CTAG	6 cut(s)	372, 525, 605, 947, 1025, 1146
BfuAI	ACCTGC	1 cut(s)	574
BfuI	GTATCC	1 cut(s)	1144
BisI	GCNGC	2 cut(s)	609, 820
BlsI	GCNGC	2 cut(s)	610, 821
BmcAI	AGTACT	1 cut(s)	953
Bme1390I	CCNGG	3 cut(s)	111, 112, 843
BmeRI	GACNNNNNGTC	1 cut(s)	1045
BmeT110I	CYCGRG	1 cut(s)	110
BmiI	GGNNCC	2 cut(s)	393, 944
BmrFI	CCNGG	3 cut(s)	111, 112, 843
BmsI	GCATC	5 cut(s)	754, 862, 1018, 1087, 1135
BmtI	GCTAGC	1 cut(s)	608
BoxI	GACNNNNGTC	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	537
BpuMI	CCSGG	2 cut(s)	111, 112
BsaAI	YACGTR	1 cut(s)	85
BsaJI	CCNNGG	4 cut(s)	110, 111, 841, 861
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
BseBI	CCWGG	1 cut(s)	843
BseDI	CCNNGG	4 cut(s)	110, 111, 841, 861
BseGI	GGATG	4 cut(s)	121, 727, 789, 820
BseMII	CTCAG	1 cut(s)	870
BseRI	GAGGAG	1 cut(s)	173
BseXI	GCAGC	2 cut(s)	595, 806
BsgI	GTGCAG	1 cut(s)	594
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	111
BsmAI	GTCTC	1 cut(s)	335
BsoBI	CYCGRG	1 cut(s)	110
Bsp1407I	TGTACA	2 cut(s)	43, 493
Bsp143I	GATC	1 cut(s)	511
Bsp19I	CCATGG	1 cut(s)	861
BspACI	CCGC	2 cut(s)	315, 1031
BspCNI	CTCAG	1 cut(s)	869
BspHI	TCATGA	1 cut(s)	235
BspLI	GGNNCC	2 cut(s)	393, 944
BspMI	ACCTGC	1 cut(s)	574
BspOI	GCTAGC	1 cut(s)	608
BspPI	GGATC	1 cut(s)	506
BsrGI	TGTACA	2 cut(s)	43, 493
BssECI	CCNNGG	4 cut(s)	110, 111, 841, 861
BssMI	GATC	1 cut(s)	511
BssT1I	CCWWGG	1 cut(s)	861
Bst2UI	CCWGG	1 cut(s)	843
Bst4CI	ACNGT	3 cut(s)	445, 1055, 1070
Bst6I	CTCTTC	1 cut(s)	539
BstAUI	TGTACA	2 cut(s)	43, 493
BstBAI	YACGTR	1 cut(s)	85
BstC8I	GCNNGC	3 cut(s)	313, 606, 769
BstDEI	CTNAG	1 cut(s)	856
BstDSI	CCRYGG	1 cut(s)	861
BstEII	GGTNACC	1 cut(s)	709
BstF5I	GGATG	4 cut(s)	121, 727, 789, 820
BstKTI	GATC	1 cut(s)	514
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	1 cut(s)	511
BstNI	CCWGG	1 cut(s)	843
BstNSI	RCATGY	2 cut(s)	315, 771
BstPAI	GACNNNNGTC	1 cut(s)	231
BstPI	GGTNACC	1 cut(s)	709
BstSCI	CCNGG	3 cut(s)	109, 110, 841
BstV1I	GCAGC	2 cut(s)	595, 806
BsuI	GTATCC	1 cut(s)	1144
BtgI	CCRYGG	1 cut(s)	861
BtsCI	GGATG	4 cut(s)	121, 727, 789, 820
BtsIMutI	CAGTG	2 cut(s)	1060, 1066
BveI	ACCTGC	1 cut(s)	574
Cac8I	GCNNGC	3 cut(s)	313, 606, 769
CciI	TCATGA	1 cut(s)	235
Cfr9I	CCCGGG	1 cut(s)	110
Csp6I	GTAC	5 cut(s)	44, 465, 494, 838, 952
CviAII	CATG	7 cut(s)	47, 202, 236, 312, 768, 862, 1164
CviJI	RGCY	7 cut(s)	509, 604, 608, 788, 819, 860, 1021
CviKI_1	RGCY	7 cut(s)	509, 604, 608, 788, 819, 860, 1021
CviQI	GTAC	5 cut(s)	44, 465, 494, 838, 952
DdeI	CTNAG	1 cut(s)	856
DpnI	GATC	1 cut(s)	513
DpnII	GATC	1 cut(s)	511
DraI	TTTAAA	1 cut(s)	742
DriI	GACNNNNNGTC	1 cut(s)	1045
Eam1104I	CTCTTC	1 cut(s)	539
Eam1105I	GACNNNNNGTC	1 cut(s)	1045
EarI	CTCTTC	1 cut(s)	539
Eco130I	CCWWGG	1 cut(s)	861
Eco88I	CYCGRG	1 cut(s)	110
Eco91I	GGTNACC	1 cut(s)	709
EcoO65I	GGTNACC	1 cut(s)	709
EcoRI	GAATTC	1 cut(s)	619
EcoRII	CCWGG	1 cut(s)	841
EcoT14I	CCWWGG	1 cut(s)	861
EcoT22I	ATGCAT	1 cut(s)	769
ErhI	CCWWGG	1 cut(s)	861
FaeI	CATG	7 cut(s)	50, 205, 239, 315, 771, 865, 1167
FalI	AAGNNNNNCTT	2 cut(s)	328, 360
FatI	CATG	7 cut(s)	46, 201, 235, 311, 767, 861, 1163
Fnu4HI	GCNGC	2 cut(s)	609, 820
FokI	GGATG	4 cut(s)	128, 734, 796, 827
Fsp4HI	GCNGC	2 cut(s)	609, 820
FspBI	CTAG	6 cut(s)	372, 525, 605, 947, 1025, 1146
GluI	GCNGC	2 cut(s)	609, 820
HapII	CCGG	1 cut(s)	111
Hin1II	CATG	7 cut(s)	50, 205, 239, 315, 771, 865, 1167
HincII	GTYRAC	1 cut(s)	1140
HindII	GTYRAC	1 cut(s)	1140
HinfI	GANTC	3 cut(s)	207, 424, 1105
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	2 cut(s)	140, 227
Hpy166II	GTNNAC	2 cut(s)	1058, 1140
Hpy188I	TCNGA	1 cut(s)	226
Hpy188III	TCNNGA	5 cut(s)	236, 450, 525, 554, 1109
Hpy8I	GTNNAC	2 cut(s)	1058, 1140
HpyAV	CCTTC	3 cut(s)	4, 113, 284
HpyCH4III	ACNGT	3 cut(s)	445, 1055, 1070
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	5 cut(s)	311, 611, 767, 771, 976
HpyF3I	CTNAG	1 cut(s)	856
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	7 cut(s)	50, 205, 239, 315, 771, 865, 1167
Kzo9I	GATC	1 cut(s)	511
LpnPI	CCDG	8 cut(s)	124, 408, 569, 609, 774, 828, 855, 1122
Lsp1109I	GCAGC	2 cut(s)	595, 806
LweI	GCATC	5 cut(s)	754, 862, 1018, 1087, 1135
MaeI	CTAG	6 cut(s)	372, 525, 605, 947, 1025, 1146
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	709
MalI	GATC	1 cut(s)	513
MboI	GATC	1 cut(s)	511
MboII	GAAGA	7 cut(s)	34, 80, 143, 257, 278, 299, 526
MmeI	TCCRAC	2 cut(s)	761, 792
MnlI	CCTC	8 cut(s)	151, 246, 298, 594, 625, 661, 719, 768
Mph1103I	ATGCAT	1 cut(s)	769
MseI	TTAA	8 cut(s)	39, 297, 674, 741, 1035, 1043, 1101, 1122
MslI	CAYNNNNRTG	2 cut(s)	234, 240
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	3 cut(s)	111, 112, 843
MvaI	CCWGG	1 cut(s)	843
NciI	CCSGG	2 cut(s)	111, 112
NcoI	CCATGG	1 cut(s)	861
NdeII	GATC	1 cut(s)	511
NheI	GCTAGC	1 cut(s)	604
NlaIII	CATG	7 cut(s)	50, 205, 239, 315, 771, 865, 1167
NlaIV	GGNNCC	2 cut(s)	393, 944
NsiI	ATGCAT	1 cut(s)	769
NspI	RCATGY	2 cut(s)	315, 771
PaeI	GCATGC	2 cut(s)	315, 771
PagI	TCATGA	1 cut(s)	235
PfeI	GAWTC	3 cut(s)	207, 424, 1105
PflFI	GACNNNGTC	1 cut(s)	346
PkrI	GCNGC	2 cut(s)	610, 821
Ppu21I	YACGTR	1 cut(s)	85
PshAI	GACNNNNGTC	1 cut(s)	231
PshBI	ATTAAT	1 cut(s)	39
PsiI	TTATAA	2 cut(s)	17, 590
Psp6I	CCWGG	1 cut(s)	841
PspEI	GGTNACC	1 cut(s)	709
PspGI	CCWGG	1 cut(s)	841
PspN4I	GGNNCC	2 cut(s)	393, 944
PsyI	GACNNNGTC	1 cut(s)	346
RsaI	GTAC	5 cut(s)	45, 466, 495, 839, 953
RsaNI	GTAC	5 cut(s)	44, 465, 494, 838, 952
RseI	CAYNNNNRTG	2 cut(s)	234, 240
SaqAI	TTAA	8 cut(s)	39, 297, 674, 741, 1035, 1043, 1101, 1122
SatI	GCNGC	2 cut(s)	609, 820
Sau3AI	GATC	1 cut(s)	511
ScaI	AGTACT	1 cut(s)	953
ScrFI	CCNGG	3 cut(s)	111, 112, 843
SfaNI	GCATC	5 cut(s)	754, 862, 1018, 1087, 1135
SmaI	CCCGGG	1 cut(s)	112
SmiMI	CAYNNNNRTG	2 cut(s)	234, 240
SmlI	CTYRAG	1 cut(s)	552
SmoI	CTYRAG	1 cut(s)	552
SphI	GCATGC	2 cut(s)	315, 771
SsiI	CCGC	2 cut(s)	315, 1031
SspMI	CTAG	6 cut(s)	372, 525, 605, 947, 1025, 1146
StyD4I	CCNGG	3 cut(s)	109, 110, 841
StyI	CCWWGG	1 cut(s)	861
TaaI	ACNGT	3 cut(s)	445, 1055, 1070
TaiI	ACGT	1 cut(s)	87
TatI	WGTACW	4 cut(s)	43, 464, 493, 951
TfiI	GAWTC	3 cut(s)	207, 424, 1105
Tru1I	TTAA	8 cut(s)	39, 297, 674, 741, 1035, 1043, 1101, 1122
Tru9I	TTAA	8 cut(s)	39, 297, 674, 741, 1035, 1043, 1101, 1122
TscAI	CASTG	2 cut(s)	1060, 1073
TseI	GCWGC	2 cut(s)	608, 819
TspDTI	ATGAA	5 cut(s)	35, 81, 132, 300, 632
TspMI	CCCGGG	1 cut(s)	110
TspRI	CASTG	2 cut(s)	1060, 1073
Tth111I	GACNNNGTC	1 cut(s)	346
VspI	ATTAAT	1 cut(s)	39
XapI	RAATTY	2 cut(s)	219, 619
XbaI	TCTAGA	1 cut(s)	524
XceI	RCATGY	2 cut(s)	315, 771
XmaI	CCCGGG	1 cut(s)	110
XspI	CTAG	6 cut(s)	372, 525, 605, 947, 1025, 1146
ZrmI	AGTACT	1 cut(s)	953
Zsp2I	ATGCAT	1 cut(s)	769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.