Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003968

Physical Location & Seq

Genomic Coordinates Forward (+)

51948036 .. 51948548

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG445700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGGATATGCAGGTTACATCTCAGACCATTCTAATGATAGTGAAGAGTTGAGGGAGAAAGATGAATTAGATTCAGATTCAGATGAGGCATCAAGTAACAGAAAGAAGAAGAAAAAGGTTAAGGTAGGTAGGGCATGGGTTCCAGAAAGGGATATGAAAGACCCAAAATTTGAACTTGGCCAACATTTTGCCAACTCCAAACAGTTCAAGGAAGCTGTGAAGAAATACGCAGTGAAGAATGGGTTGAATTTATCTTTCAATAAGAACACAGCTAAGAAGGTTCAAGTGGTTTGTGGTCCCAAAAAAAAGGATAAGTTGGAAGATAGGCCTTGTCAATTTTGGATATATGCTGGATTTATAAACAAGATATCTCCAGAGCTGATGATTAAAACTATGAACTTGGAACATGGTGTTTGTGAGACGCTTCCAAGGGTTAAGATGTGCACATCTACATTTCTTGCAAAAGAATACGTTAACCACTTCAAGGCAGATCCCTATATGTCCAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBD_Tnp_Mut MULE SWIM

Protein Analysis

170

Amino Acids

19.6

Weight (kDa)

9.35

Isoelectric Point (pI)

30.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003968)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0085051 RchiOBHm_Chr5g0037941
rosa_laevigata	RLG00000017994 RLG00000019454 RLG00000027093 RLG00000029383
rosa_multiflora	Rmu_sc0000509.1_g000001 Rmu_sc0003573.1_g000043 Rmu_sc0015807.1_g000003
rosa_roxburghii	Rroxscaffold_2G00129780 Rroxscaffold_6G00407110
rosa_rugosa	Rorug07G0294600 Rorug07G0319600
rosa_samantha	Rh1DG445800 Rh2AG168400 Rh2AG243600 Rh2AG243700 Rh2BG175400 Rh2BG201700 Rh2CG249000 Rh2DG173900 Rh2DG252100 Rh2DG252200 Rh3DG150400 Rh4AG146900 Rh4CG153500 Rh5AG355600 Rh5AG500800 Rh5AG500900 Rh5CG330400 Rh7BG445500 Rh7BG445600 Rh7BG445700
rosa_wichuraiana	Rw0G005140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	359
Acc36I	ACCTGC	1 cut(s)	2
AclWI	GGATC	1 cut(s)	485
AcoI	YGGCCR	1 cut(s)	178
AcsI	RAATTY	2 cut(s)	167, 247
AfiI	CCNNNNNNNGG	1 cut(s)	484
AgsI	TTSAA	6 cut(s)	173, 208, 247, 259, 284, 484
AluBI	AGCT	3 cut(s)	215, 272, 379
AluI	AGCT	3 cut(s)	215, 272, 379
Alw21I	GWGCWC	1 cut(s)	446
Alw26I	GTCTC	1 cut(s)	413
Alw44I	GTGCAC	1 cut(s)	442
AlwI	GGATC	1 cut(s)	485
AoxI	GGCC	2 cut(s)	178, 326
ApaLI	GTGCAC	1 cut(s)	442
ApoI	RAATTY	2 cut(s)	167, 247
ArsI	GACNNNNNNTTYG	2 cut(s)	152, 184
AspS9I	GGNCC	1 cut(s)	296
AvaII	GGWCC	1 cut(s)	296
BaeGI	GKGCMC	1 cut(s)	446
BalI	TGGCCA	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	446
BcoDI	GTCTC	1 cut(s)	413
BfuAI	ACCTGC	1 cut(s)	2
Bme18I	GGWCC	1 cut(s)	296
BmgT120I	GGNCC	1 cut(s)	296
BmiI	GGNNCC	2 cut(s)	141, 298
BmsI	GCATC	1 cut(s)	98
BpmI	CTGGAG	1 cut(s)	357
BsaJI	CCNNGG	1 cut(s)	428
Bsc4I	CCNNNNNNNGG	1 cut(s)	484
BseDI	CCNNGG	1 cut(s)	428
BseLI	CCNNNNNNNGG	1 cut(s)	484
BseMII	CTCAG	1 cut(s)	36
BseSI	GKGCMC	1 cut(s)	446
BshFI	GGCC	2 cut(s)	180, 328
BsiHKAI	GWGCWC	1 cut(s)	446
BslFI	GGGAC	1 cut(s)	282
BslI	CCNNNNNNNGG	1 cut(s)	484
BsmAI	GTCTC	1 cut(s)	413
BsmBI	CGTCTC	1 cut(s)	413
BsmFI	GGGAC	1 cut(s)	282
BsnI	GGCC	2 cut(s)	180, 328
Bsp1286I	GDGCHC	1 cut(s)	446
Bsp143I	GATC	1 cut(s)	490
BspANI	GGCC	2 cut(s)	180, 328
BspCNI	CTCAG	1 cut(s)	35
BspLI	GGNNCC	2 cut(s)	141, 298
BspMI	ACCTGC	1 cut(s)	2
BspPI	GGATC	1 cut(s)	485
BssECI	CCNNGG	1 cut(s)	428
BssMI	GATC	1 cut(s)	490
BssT1I	CCWWGG	1 cut(s)	428
Bst4CI	ACNGT	1 cut(s)	204
Bst6I	CTCTTC	1 cut(s)	39
BstDEI	CTNAG	2 cut(s)	22, 273
BstKTI	GATC	1 cut(s)	493
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	1 cut(s)	490
BstSLI	GKGCMC	1 cut(s)	446
BstX2I	RGATCY	1 cut(s)	490
BstYI	RGATCY	1 cut(s)	490
BsuRI	GGCC	2 cut(s)	180, 328
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	1 cut(s)	237
BveI	ACCTGC	1 cut(s)	2
Cfr13I	GGNCC	1 cut(s)	296
CseI	GACGC	1 cut(s)	430
CviAII	CATG	2 cut(s)	135, 407
CviJI	RGCY	5 cut(s)	180, 215, 272, 328, 379
CviKI_1	RGCY	5 cut(s)	180, 215, 272, 328, 379
DdeI	CTNAG	2 cut(s)	22, 273
DpnI	GATC	1 cut(s)	492
DpnII	GATC	1 cut(s)	490
EaeI	YGGCCR	1 cut(s)	178
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	428
Eco147I	AGGCCT	1 cut(s)	328
Eco32I	GATATC	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	296
EcoRV	GATATC	1 cut(s)	369
EcoT14I	CCWWGG	1 cut(s)	428
ErhI	CCWWGG	1 cut(s)	428
Esp3I	CGTCTC	1 cut(s)	413
FaeI	CATG	2 cut(s)	138, 410
FaqI	GGGAC	1 cut(s)	282
FatI	CATG	2 cut(s)	134, 406
GsuI	CTGGAG	1 cut(s)	357
HaeIII	GGCC	2 cut(s)	180, 328
HgaI	GACGC	1 cut(s)	430
Hin1II	CATG	2 cut(s)	138, 410
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HinfI	GANTC	2 cut(s)	71, 77
HpaI	GTTAAC	1 cut(s)	475
Hpy166II	GTNNAC	2 cut(s)	444, 475
Hpy188I	TCNGA	3 cut(s)	25, 76, 82
Hpy188III	TCNNGA	2 cut(s)	143, 374
Hpy8I	GTNNAC	2 cut(s)	444, 475
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	1 cut(s)	204
HpyCH4IV	ACGT	1 cut(s)	471
HpyCH4V	TGCA	3 cut(s)	11, 444, 461
HpyF3I	CTNAG	2 cut(s)	22, 273
HpySE526I	ACGT	1 cut(s)	471
Hsp92II	CATG	2 cut(s)	138, 410
KspAI	GTTAAC	1 cut(s)	475
Kzo9I	GATC	1 cut(s)	490
LpnPI	CCDG	3 cut(s)	156, 336, 387
LweI	GCATC	1 cut(s)	98
MaeII	ACGT	1 cut(s)	471
MaeIII	GTNAC	2 cut(s)	14, 95
MalI	GATC	1 cut(s)	492
MboI	GATC	1 cut(s)	490
MboII	GAAGA	6 cut(s)	56, 118, 121, 232, 247, 332
MflI	RGATCY	1 cut(s)	490
MhlI	GDGCHC	1 cut(s)	446
MlsI	TGGCCA	1 cut(s)	180
MluCI	AATT	4 cut(s)	65, 167, 247, 335
MluNI	TGGCCA	1 cut(s)	180
MmeI	TCCRAC	1 cut(s)	297
MnlI	CCTC	2 cut(s)	45, 79
Mox20I	TGGCCA	1 cut(s)	180
MscI	TGGCCA	1 cut(s)	180
MseI	TTAA	4 cut(s)	120, 387, 435, 474
MslI	CAYNNNNRTG	1 cut(s)	33
Msp20I	TGGCCA	1 cut(s)	180
NdeII	GATC	1 cut(s)	490
NlaIII	CATG	2 cut(s)	138, 410
NlaIV	GGNNCC	2 cut(s)	141, 298
PceI	AGGCCT	1 cut(s)	328
PfeI	GAWTC	2 cut(s)	71, 77
PsiI	TTATAA	1 cut(s)	359
PspN4I	GGNNCC	2 cut(s)	141, 298
PspPI	GGNCC	1 cut(s)	296
PsuI	RGATCY	1 cut(s)	490
RseI	CAYNNNNRTG	1 cut(s)	33
SaqAI	TTAA	4 cut(s)	120, 387, 435, 474
Sau3AI	GATC	1 cut(s)	490
Sau96I	GGNCC	1 cut(s)	296
SduI	GDGCHC	1 cut(s)	446
SetI	ASST	9 cut(s)	16, 120, 126, 130, 217, 274, 282, 381, 474
SfaNI	GCATC	1 cut(s)	98
SinI	GGWCC	1 cut(s)	296
SmiMI	CAYNNNNRTG	1 cut(s)	33
Sse9I	AATT	4 cut(s)	65, 167, 247, 335
SseBI	AGGCCT	1 cut(s)	328
StuI	AGGCCT	1 cut(s)	328
StyI	CCWWGG	1 cut(s)	428
TaaI	ACNGT	1 cut(s)	204
TaiI	ACGT	1 cut(s)	474
TasI	AATT	4 cut(s)	65, 167, 247, 335
TfiI	GAWTC	2 cut(s)	71, 77
Tru1I	TTAA	4 cut(s)	120, 387, 435, 474
Tru9I	TTAA	4 cut(s)	120, 387, 435, 474
TscAI	CASTG	1 cut(s)	237
TspDTI	ATGAA	3 cut(s)	78, 170, 410
TspRI	CASTG	1 cut(s)	237
VneI	GTGCAC	1 cut(s)	442
VpaK11BI	GGWCC	1 cut(s)	296
XapI	RAATTY	2 cut(s)	167, 247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.