RLG00000029383

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0003968
Physical Location & Seq
Forward (+)
37855798 .. 37863244
7447 bp
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UTR
Exon/CDS
Intron
RLM00000029383

Sequence Viewer

Length: 477 bp
ATGAAAAGGATATTGATGCTTCTGTTGGTATATGTCTTCAGCCAACTCTTCAATTATTCCAGACTTATCTACAGATTAAGTAAGACATTGGTGCTGCTGCTTTGTGTCTTGTGTGGTCTGATTGTTGGGTGGCAGAACGTCAAGGTTTCACTCTTCAAATACATCATGGAGGCGCGGGGCAATGGAGACAATGAAAATGGAGATCACGACAATGGAGAAAGTGGTAATCGAGACGATACCAATGGAAATGAAGGCAGGGGTCAGCAGGTTGCCAAAATAGCACCAAGGAGGGGTCAGACCTCTAAGGCACCTAGTCATGCCATCCAAACATCACCGAATCCTTCATCAAGCCAACCATCACCTGCAACTTTCTCACAACAACCAGTGTTATCAACCAGTATTTCACAACCCACTCCAGTTAAGGCGAAACCAAAAATGCCAAAGCAGCCACCTAAAAAGCCTGTGTGGAAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.47

Weight (kDa)

10.06

Isoelectric Point (pI)

42.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 370
Acc36I ACCTGC 2 cut(s) 256, 370
AccB1I GGYRCC 1 cut(s) 307
AccII CGCG 1 cut(s) 175
AciI CCGC 1 cut(s) 175
AcuI CTGAAG 1 cut(s) 22
AfiI CCNNNNNNNGG 1 cut(s) 290
AgsI TTSAA 2 cut(s) 52, 157
Alw26I GTCTC 2 cut(s) 180, 225
ApeKI GCWGC 3 cut(s) 94, 97, 445
AspLEI GCGC 1 cut(s) 175
AsuHPI GGTGA 2 cut(s) 324, 351
BanI GGYRCC 1 cut(s) 307
BbsI GAAGAC 1 cut(s) 28
BbvI GCAGC 3 cut(s) 81, 84, 457
BccI CCATC 2 cut(s) 329, 364
BcoDI GTCTC 2 cut(s) 180, 225
BfaI CTAG 1 cut(s) 312
BfmI CTRYAG 1 cut(s) 70
BfuAI ACCTGC 2 cut(s) 256, 370
BisI GCNGC 3 cut(s) 95, 98, 446
BlsI GCNGC 3 cut(s) 96, 99, 447
BmiI GGNNCC 1 cut(s) 309
BmsI GCATC 1 cut(s) 6
BpiI GAAGAC 1 cut(s) 28
BpmI CTGGAG 1 cut(s) 399
BsaJI CCNNGG 1 cut(s) 284
Bsc4I CCNNNNNNNGG 1 cut(s) 290
Bse1I ACTGG 3 cut(s) 383, 396, 416
Bse3DI GCAATG 1 cut(s) 187
BseDI CCNNGG 1 cut(s) 284
BseGI GGATG 1 cut(s) 321
BseLI CCNNNNNNNGG 1 cut(s) 290
BseMI GCAATG 1 cut(s) 187
BseNI ACTGG 3 cut(s) 383, 396, 416
BseXI GCAGC 3 cut(s) 81, 84, 457
Bsh1236I CGCG 1 cut(s) 175
BshNI GGYRCC 1 cut(s) 307
BslI CCNNNNNNNGG 1 cut(s) 290
BsmAI GTCTC 2 cut(s) 180, 225
BsmBI CGTCTC 1 cut(s) 225
Bsp143I GATC 1 cut(s) 202
BspACI CCGC 1 cut(s) 175
BspFNI CGCG 1 cut(s) 175
BspLI GGNNCC 1 cut(s) 309
BspMI ACCTGC 2 cut(s) 256, 370
BspT107I GGYRCC 1 cut(s) 307
BsrDI GCAATG 1 cut(s) 187
BsrI ACTGG 3 cut(s) 383, 396, 416
BssECI CCNNGG 1 cut(s) 284
BssMI GATC 1 cut(s) 202
BssT1I CCWWGG 1 cut(s) 284
Bst6I CTCTTC 2 cut(s) 53, 158
BstDEI CTNAG 1 cut(s) 303
BstF5I GGATG 1 cut(s) 321
BstFNI CGCG 1 cut(s) 175
BstHHI GCGC 1 cut(s) 175
BstKTI GATC 1 cut(s) 205
BstMAI GTCTC 2 cut(s) 180, 225
BstMBI GATC 1 cut(s) 202
BstMWI GCNNNNNNNGC 2 cut(s) 278, 445
BstSFI CTRYAG 1 cut(s) 70
BstUI CGCG 1 cut(s) 175
BstV1I GCAGC 3 cut(s) 81, 84, 457
BstV2I GAAGAC 1 cut(s) 28
BtsCI GGATG 1 cut(s) 321
BtsIMutI CAGTG 1 cut(s) 390
BveI ACCTGC 2 cut(s) 256, 370
CfoI GCGC 1 cut(s) 175
CviAII CATG 2 cut(s) 166, 317
CviJI RGCY 4 cut(s) 42, 351, 448, 460
CviKI_1 RGCY 4 cut(s) 42, 351, 448, 460
DdeI CTNAG 1 cut(s) 303
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
Eam1104I CTCTTC 2 cut(s) 53, 158
EarI CTCTTC 2 cut(s) 53, 158
Eco130I CCWWGG 1 cut(s) 284
Eco57I CTGAAG 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 284
ErhI CCWWGG 1 cut(s) 284
Esp3I CGTCTC 1 cut(s) 225
FaeI CATG 2 cut(s) 169, 320
FaiI YATR 4 cut(s) 31, 33, 167, 318
FatI CATG 2 cut(s) 165, 316
FauI CCCGC 1 cut(s) 168
Fnu4HI GCNGC 3 cut(s) 95, 98, 446
FokI GGATG 1 cut(s) 308
Fsp4HI GCNGC 3 cut(s) 95, 98, 446
FspBI CTAG 1 cut(s) 312
GlaI GCGC 1 cut(s) 174
GluI GCNGC 3 cut(s) 95, 98, 446
GsuI CTGGAG 1 cut(s) 399
HhaI GCGC 1 cut(s) 175
Hin1II CATG 2 cut(s) 169, 320
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HinfI GANTC 1 cut(s) 337
HphI GGTGA 2 cut(s) 324, 351
Hpy188I TCNGA 2 cut(s) 120, 297
Hpy188III TCNNGA 3 cut(s) 60, 206, 230
HpyAV CCTTC 2 cut(s) 245, 351
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 1 cut(s) 365
HpyF10VI GCNNNNNNNGC 2 cut(s) 278, 445
HpyF3I CTNAG 1 cut(s) 303
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 2 cut(s) 169, 320
HspAI GCGC 1 cut(s) 173
Kzo9I GATC 1 cut(s) 202
LpnPI CCDG 7 cut(s) 73, 241, 251, 375, 396, 409, 429
Lsp1109I GCAGC 3 cut(s) 81, 84, 457
LweI GCATC 1 cut(s) 6
MaeI CTAG 1 cut(s) 312
MaeII ACGT 1 cut(s) 138
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 3 cut(s) 28, 40, 145
MluCI AATT 1 cut(s) 52
MnlI CCTC 3 cut(s) 163, 282, 310
MseI TTAA 2 cut(s) 77, 420
MslI CAYNNNNRTG 1 cut(s) 210
MvnI CGCG 1 cut(s) 175
MwoI GCNNNNNNNGC 2 cut(s) 278, 445
NdeII GATC 1 cut(s) 202
NlaIII CATG 2 cut(s) 169, 320
NlaIV GGNNCC 1 cut(s) 309
PaqCI CACCTGC 1 cut(s) 370
PfeI GAWTC 1 cut(s) 337
PkrI GCNGC 3 cut(s) 96, 99, 447
PspN4I GGNNCC 1 cut(s) 309
RseI CAYNNNNRTG 1 cut(s) 210
SaqAI TTAA 2 cut(s) 77, 420
SatI GCNGC 3 cut(s) 95, 98, 446
Sau3AI GATC 1 cut(s) 202
SetI ASST 7 cut(s) 141, 147, 270, 302, 313, 364, 454
SfaNI GCATC 1 cut(s) 6
SfcI CTRYAG 1 cut(s) 70
SmiMI CAYNNNNRTG 1 cut(s) 210
Sse9I AATT 1 cut(s) 52
SsiI CCGC 1 cut(s) 175
SspMI CTAG 1 cut(s) 312
StyI CCWWGG 1 cut(s) 284
TaiI ACGT 1 cut(s) 141
TaqI TCGA 1 cut(s) 229
TasI AATT 1 cut(s) 52
TfiI GAWTC 1 cut(s) 337
Tru1I TTAA 2 cut(s) 77, 420
Tru9I TTAA 2 cut(s) 77, 420
TscAI CASTG 1 cut(s) 390
TseI GCWGC 3 cut(s) 94, 97, 445
TspDTI ATGAA 4 cut(s) 17, 207, 264, 333
TspRI CASTG 1 cut(s) 390
XspI CTAG 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.