Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000509.1

Orthogroup ID

OG0003968

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1009

Gene Structure 1009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000509.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

tcctcacctctgtggctctacctctcagctctcacaagtcacaatcggtctcttgtgtctctatcccagcctcccaagtacaccaaggtggtcttgattggcgactccggcgtcggcaagtccaatctcctctccagaaatgagtttgatttgtgggatttggtgagtttcagccttcaggggcagatttggtggtttgtggttgcatgtgggtttgttgaatttgaagattatatatttctgtacttgattcaaaagctaggtaccgtcaaaaagccccttggtgttaagaaaaatgggaaaactgggggacttggtgctcgcaaactcactacaaagccaaatgaaagtctgtatgatcagaagcctgaagaaccagttatcccagtagtttcctcaaccaaaagcactccaccagctgtcacacccctttctgcacccaagtcatcgagtttctctgcggatttcggaatggatagcagttatcccaagagaactagttcaaactcctcaaaggtgcaagtaagttctgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0007275 GO:0008150 GO:0009555 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0010033 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap

Protein Analysis

178

Amino Acids

19.42

Weight (kDa)

9.49

Isoelectric Point (pI)

46.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003968)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0085051 RchiOBHm_Chr5g0037941
rosa_laevigata	RLG00000017994 RLG00000019454 RLG00000027093 RLG00000029383
rosa_multiflora	Rmu_sc0000509.1_g000001 Rmu_sc0003573.1_g000043 Rmu_sc0015807.1_g000003
rosa_roxburghii	Rroxscaffold_2G00129780 Rroxscaffold_6G00407110
rosa_rugosa	Rorug07G0294600 Rorug07G0319600
rosa_samantha	Rh1DG445800 Rh2AG168400 Rh2AG243600 Rh2AG243700 Rh2BG175400 Rh2BG201700 Rh2CG249000 Rh2DG173900 Rh2DG252100 Rh2DG252200 Rh3DG150400 Rh4AG146900 Rh4CG153500 Rh5AG355600 Rh5AG500800 Rh5AG500900 Rh5CG330400 Rh7BG445500 Rh7BG445600 Rh7BG445700
rosa_wichuraiana	Rw0G005140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	110
Acc65I	GGTACC	1 cut(s)	263
AccB1I	GGYRCC	1 cut(s)	263
AciI	CCGC	1 cut(s)	461
AcsI	RAATTY	1 cut(s)	221
AcuI	CTGAAG	2 cut(s)	161, 390
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	3 cut(s)	80, 245, 265
AgsI	TTSAA	4 cut(s)	221, 227, 254, 504
AhlI	ACTAGT	1 cut(s)	497
AleI	CACNNNNGTG	2 cut(s)	10, 86
AloI	GAACNNNNNNTCC	2 cut(s)	366, 398
AluBI	AGCT	3 cut(s)	29, 259, 419
AluI	AGCT	3 cut(s)	29, 259, 419
Alw21I	GWGCWC	1 cut(s)	322
Alw26I	GTCTC	2 cut(s)	54, 63
ApoI	RAATTY	1 cut(s)	221
Asp700I	GAANNNNTTC	1 cut(s)	499
Asp718I	GGTACC	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	175
BanI	GGYRCC	1 cut(s)	263
Bbv12I	GWGCWC	1 cut(s)	322
BclI	TGATCA	1 cut(s)	358
BcoDI	GTCTC	2 cut(s)	54, 63
BcuI	ACTAGT	1 cut(s)	497
BfaI	CTAG	2 cut(s)	260, 498
BmiI	GGNNCC	1 cut(s)	265
BmrI	ACTGGG	2 cut(s)	315, 380
BmuI	ACTGGG	2 cut(s)	315, 380
BpmI	CTGGAG	1 cut(s)	118
BsaHI	GRCGYC	1 cut(s)	111
BsaI	GGTCTC	1 cut(s)	54
BsaJI	CCNNGG	2 cut(s)	84, 280
Bse1I	ACTGG	3 cut(s)	310, 377, 386
BseDI	CCNNGG	2 cut(s)	84, 280
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	3 cut(s)	310, 377, 386
BseRI	GAGGAG	2 cut(s)	119, 499
BseYI	CCCAGC	1 cut(s)	66
BsgI	GTGCAG	1 cut(s)	420
BshNI	GGYRCC	1 cut(s)	263
BsiHKAI	GWGCWC	1 cut(s)	322
BsiSI	CCGG	1 cut(s)	108
BslFI	GGGAC	1 cut(s)	324
BsmAI	GTCTC	2 cut(s)	54, 63
BsmFI	GGGAC	1 cut(s)	324
Bso31I	GGTCTC	1 cut(s)	54
Bsp1286I	GDGCHC	1 cut(s)	322
Bsp143I	GATC	1 cut(s)	358
BspACI	CCGC	1 cut(s)	461
BspCNI	CTCAG	1 cut(s)	38
BspLI	GGNNCC	1 cut(s)	265
BspT107I	GGYRCC	1 cut(s)	263
BspTNI	GGTCTC	1 cut(s)	54
BsrI	ACTGG	3 cut(s)	310, 377, 386
BssECI	CCNNGG	2 cut(s)	84, 280
BssMI	GATC	1 cut(s)	358
BssNI	GRCGYC	1 cut(s)	111
BssT1I	CCWWGG	2 cut(s)	84, 280
Bst4CI	ACNGT	1 cut(s)	268
BstACI	GRCGYC	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	322
BstDEI	CTNAG	1 cut(s)	25
BstKTI	GATC	1 cut(s)	361
BstMAI	GTCTC	2 cut(s)	54, 63
BstMBI	GATC	1 cut(s)	358
BstMWI	GCNNNNNNNGC	1 cut(s)	108
BstNSI	RCATGY	1 cut(s)	210
Cac8I	GCNNGC	1 cut(s)	322
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	3 cut(s)	79, 244, 264
CviAII	CATG	1 cut(s)	207
CviJI	RGCY	9 cut(s)	16, 29, 70, 174, 259, 277, 340, 367, 419
CviKI_1	RGCY	9 cut(s)	16, 29, 70, 174, 259, 277, 340, 367, 419
CviQI	GTAC	3 cut(s)	79, 244, 264
DdeI	CTNAG	1 cut(s)	25
DpnI	GATC	1 cut(s)	360
DpnII	GATC	1 cut(s)	358
DrdI	GACNNNNNNGTC	1 cut(s)	110
DseDI	GACNNNNNNGTC	1 cut(s)	110
Eco130I	CCWWGG	2 cut(s)	84, 280
Eco31I	GGTCTC	1 cut(s)	54
Eco57I	CTGAAG	2 cut(s)	161, 390
EcoT14I	CCWWGG	2 cut(s)	84, 280
ErhI	CCWWGG	2 cut(s)	84, 280
FaeI	CATG	1 cut(s)	210
FaiI	YATR	4 cut(s)	208, 234, 236, 357
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FaqI	GGGAC	1 cut(s)	324
FatI	CATG	1 cut(s)	206
FbaI	TGATCA	1 cut(s)	358
FspBI	CTAG	2 cut(s)	260, 498
GsaI	CCCAGC	1 cut(s)	70
GsuI	CTGGAG	1 cut(s)	118
HapII	CCGG	1 cut(s)	108
HgaI	GACGC	1 cut(s)	100
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	1 cut(s)	210
HinfI	GANTC	2 cut(s)	104, 250
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	1 cut(s)	81
Hpy188I	TCNGA	2 cut(s)	363, 470
Hpy188III	TCNNGA	2 cut(s)	94, 135
Hpy8I	GTNNAC	1 cut(s)	81
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	185
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4V	TGCA	3 cut(s)	206, 437, 520
HpyF10VI	GCNNNNNNNGC	1 cut(s)	108
HpyF3I	CTNAG	1 cut(s)	25
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	1 cut(s)	210
KpnI	GGTACC	1 cut(s)	267
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	1 cut(s)	358
LpnPI	CCDG	9 cut(s)	80, 121, 148, 164, 291, 381, 390, 399, 429
MaeI	CTAG	2 cut(s)	260, 498
MaeIII	GTNAC	2 cut(s)	38, 421
MalI	GATC	1 cut(s)	360
MboI	GATC	1 cut(s)	358
MboII	GAAGA	2 cut(s)	239, 383
MhlI	GDGCHC	1 cut(s)	322
MluCI	AATT	1 cut(s)	221
MlyI	GAGTC	1 cut(s)	98
MnlI	CCTC	7 cut(s)	13, 18, 32, 81, 140, 406, 520
MroXI	GAANNNNTTC	1 cut(s)	499
MseI	TTAA	1 cut(s)	288
MslI	CAYNNNNRTG	2 cut(s)	10, 86
MspA1I	CMGCKG	1 cut(s)	419
MspI	CCGG	1 cut(s)	108
MwoI	GCNNNNNNNGC	1 cut(s)	108
NdeII	GATC	1 cut(s)	358
NlaIII	CATG	1 cut(s)	210
NlaIV	GGNNCC	1 cut(s)	265
NmuCI	GTSAC	2 cut(s)	38, 421
NspI	RCATGY	1 cut(s)	210
OliI	CACNNNNGTG	2 cut(s)	10, 86
PdmI	GAANNNNTTC	1 cut(s)	499
PfeI	GAWTC	1 cut(s)	250
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
PspFI	CCCAGC	1 cut(s)	66
PspN4I	GGNNCC	1 cut(s)	265
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	3 cut(s)	80, 245, 265
RsaNI	GTAC	3 cut(s)	79, 244, 264
RseI	CAYNNNNRTG	2 cut(s)	10, 86
SaqAI	TTAA	1 cut(s)	288
Sau3AI	GATC	1 cut(s)	358
SchI	GAGTC	1 cut(s)	98
SduI	GDGCHC	1 cut(s)	322
SetI	ASST	8 cut(s)	10, 24, 31, 90, 261, 265, 421, 519
SmiMI	CAYNNNNRTG	2 cut(s)	10, 86
SpeI	ACTAGT	1 cut(s)	497
Sse9I	AATT	1 cut(s)	221
SsiI	CCGC	1 cut(s)	461
SspMI	CTAG	2 cut(s)	260, 498
StyI	CCWWGG	2 cut(s)	84, 280
TaaI	ACNGT	1 cut(s)	268
TaqI	TCGA	1 cut(s)	449
TaqII	GACCGA	1 cut(s)	36
TasI	AATT	1 cut(s)	221
TatI	WGTACW	2 cut(s)	78, 243
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TseFI	GTSAC	2 cut(s)	38, 421
Tsp45I	GTSAC	2 cut(s)	38, 421
TspDTI	ATGAA	1 cut(s)	360
XapI	RAATTY	1 cut(s)	221
XceI	RCATGY	1 cut(s)	210
XmnI	GAANNNNTTC	1 cut(s)	499
XspI	CTAG	2 cut(s)	260, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.