Rh5CG330400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0003968
Physical Location & Seq
Reverse (-)
37096956 .. 37100131
3176 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG330400.1

Sequence Viewer

Length: 495 bp
ATGGAAGAGTTTTGGGGAGAATTTCGGATTTCGGGTCAACCCACATATAACAGTCAAGGTTTCACTCTTCAAATACATCATGGAGGTAATTTTGTCAAAGAGGTTGCTGGGCATAAATATGAGGGAAGTCAACTGTGTTGGATAGAGTTGCTGGATCCAGACAAGATTTCTTGGATAGAGCTCAATACTTTTGCTTGGAGGTTGGGATATAGGAAGCCACCAATGCACTATTGGTTCAAGCATCCCAACATTCATGATAGTGAAGAATTAAGGGATTTGGTGGAAGAAATTAACAGTGATGATGAAGAAGGTGAGTCAACAAGGAAACCAAAGAAAAATAGGAGACAAAAACTTATGAGAGGCAGAACTTGGGTTCCTGAGAGAGACATGAAGGATCCACAGTTTGAAGTTAACCAACAGTTTGCCAACACATCACAATTCAAGGCTGCTGTCAAGAAGTATGCTGTGAAAACTGAATATAATCTGTTTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

164

Amino Acids

19.63

Weight (kDa)

6.6

Isoelectric Point (pI)

46.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1-like PF26130 20 - 94 1.9e-13 PB1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 149, 162, 389, 402
AcsI RAATTY 1 cut(s) 20
AgsI TTSAA 4 cut(s) 71, 238, 407, 442
AloI GAACNNNNNNTCC 2 cut(s) 358, 390
AluBI AGCT 1 cut(s) 181
AluI AGCT 1 cut(s) 181
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 2 cut(s) 337, 378
AlwI GGATC 4 cut(s) 149, 162, 389, 402
ApeKI GCWGC 1 cut(s) 446
ApoI RAATTY 1 cut(s) 20
AsuHPI GGTGA 1 cut(s) 323
BamHI GGATCC 2 cut(s) 154, 394
BanII GRGCYC 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 433
BcoDI GTCTC 2 cut(s) 337, 378
BisI GCNGC 1 cut(s) 447
BlsI GCNGC 1 cut(s) 448
BmiI GGNNCC 3 cut(s) 156, 375, 396
BmsI GCATC 1 cut(s) 250
BseGI GGATG 1 cut(s) 241
BseMII CTCAG 1 cut(s) 369
BseXI GCAGC 1 cut(s) 433
BseYI CCCAGC 1 cut(s) 107
BsiHKAI GWGCWC 1 cut(s) 183
BsmAI GTCTC 2 cut(s) 337, 378
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 2 cut(s) 154, 394
BspCNI CTCAG 1 cut(s) 370
BspHI TCATGA 1 cut(s) 253
BspLI GGNNCC 3 cut(s) 156, 375, 396
BspPI GGATC 4 cut(s) 149, 162, 389, 402
BssMI GATC 2 cut(s) 154, 394
Bst4CI ACNGT 5 cut(s) 53, 135, 296, 402, 420
Bst6I CTCTTC 1 cut(s) 72
BstDEI CTNAG 1 cut(s) 378
BstF5I GGATG 1 cut(s) 241
BstKTI GATC 2 cut(s) 157, 397
BstMAI GTCTC 2 cut(s) 337, 378
BstMBI GATC 2 cut(s) 154, 394
BstMWI GCNNNNNNNGC 1 cut(s) 223
BstV1I GCAGC 1 cut(s) 433
BstX2I RGATCY 2 cut(s) 154, 394
BstYI RGATCY 2 cut(s) 154, 394
BtsCI GGATG 1 cut(s) 241
BtsIMutI CAGTG 1 cut(s) 301
CciI TCATGA 1 cut(s) 253
CviAII CATG 3 cut(s) 80, 254, 388
CviJI RGCY 3 cut(s) 181, 217, 446
CviKI_1 RGCY 3 cut(s) 181, 217, 446
DdeI CTNAG 1 cut(s) 378
DpnI GATC 2 cut(s) 156, 396
DpnII GATC 2 cut(s) 154, 394
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Ecl136II GAGCTC 1 cut(s) 181
Eco24I GRGCYC 1 cut(s) 183
Eco53kI GAGCTC 1 cut(s) 181
EcoICRI GAGCTC 1 cut(s) 181
EcoT38I GRGCYC 1 cut(s) 183
FaeI CATG 3 cut(s) 83, 257, 391
FatI CATG 3 cut(s) 79, 253, 387
Fnu4HI GCNGC 1 cut(s) 447
FokI GGATG 1 cut(s) 228
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 447
GluI GCNGC 1 cut(s) 447
GsaI CCCAGC 1 cut(s) 111
Hin1II CATG 3 cut(s) 83, 257, 391
HincII GTYRAC 4 cut(s) 38, 131, 318, 412
HindII GTYRAC 4 cut(s) 38, 131, 318, 412
HinfI GANTC 1 cut(s) 314
HpaI GTTAAC 1 cut(s) 412
HphI GGTGA 1 cut(s) 323
Hpy166II GTNNAC 4 cut(s) 38, 131, 318, 412
Hpy188I TCNGA 1 cut(s) 27
Hpy188III TCNNGA 4 cut(s) 158, 254, 377, 454
Hpy8I GTNNAC 4 cut(s) 38, 131, 318, 412
HpyAV CCTTC 2 cut(s) 302, 385
HpyCH4III ACNGT 5 cut(s) 53, 135, 296, 402, 420
HpyCH4V TGCA 1 cut(s) 226
HpyF10VI GCNNNNNNNGC 1 cut(s) 223
HpyF3I CTNAG 1 cut(s) 378
Hsp92II CATG 3 cut(s) 83, 257, 391
KspAI GTTAAC 1 cut(s) 412
Kzo9I GATC 2 cut(s) 154, 394
LpnPI CCDG 4 cut(s) 93, 137, 171, 390
Lsp1109I GCAGC 1 cut(s) 433
LweI GCATC 1 cut(s) 250
MalI GATC 2 cut(s) 156, 396
MboI GATC 2 cut(s) 154, 394
MboII GAAGA 5 cut(s) 17, 59, 275, 296, 317
MflI RGATCY 2 cut(s) 154, 394
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 5 cut(s) 20, 88, 266, 288, 437
MlyI GAGTC 1 cut(s) 323
MmeI TCCRAC 1 cut(s) 119
MnlI CCTC 5 cut(s) 77, 94, 115, 192, 353
MseI TTAA 4 cut(s) 269, 291, 411, 493
MslI CAYNNNNRTG 2 cut(s) 117, 258
MwoI GCNNNNNNNGC 1 cut(s) 223
NdeII GATC 2 cut(s) 154, 394
NlaIII CATG 3 cut(s) 83, 257, 391
NlaIV GGNNCC 3 cut(s) 156, 375, 396
PagI TCATGA 1 cut(s) 253
PkrI GCNGC 1 cut(s) 448
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
Psp124BI GAGCTC 1 cut(s) 183
PspFI CCCAGC 1 cut(s) 107
PspN4I GGNNCC 3 cut(s) 156, 375, 396
PsuI RGATCY 2 cut(s) 154, 394
RseI CAYNNNNRTG 2 cut(s) 117, 258
SacI GAGCTC 1 cut(s) 183
SaqAI TTAA 4 cut(s) 269, 291, 411, 493
SatI GCNGC 1 cut(s) 447
Sau3AI GATC 2 cut(s) 154, 394
SchI GAGTC 1 cut(s) 323
SduI GDGCHC 1 cut(s) 183
SetI ASST 6 cut(s) 61, 88, 105, 183, 203, 313
SfaNI GCATC 1 cut(s) 250
SmiMI CAYNNNNRTG 2 cut(s) 117, 258
Sse9I AATT 5 cut(s) 20, 88, 266, 288, 437
SstI GAGCTC 1 cut(s) 183
TaaI ACNGT 5 cut(s) 53, 135, 296, 402, 420
TasI AATT 5 cut(s) 20, 88, 266, 288, 437
Tru1I TTAA 4 cut(s) 269, 291, 411, 493
Tru9I TTAA 4 cut(s) 269, 291, 411, 493
TscAI CASTG 1 cut(s) 301
TseI GCWGC 1 cut(s) 446
TspDTI ATGAA 3 cut(s) 242, 318, 404
TspRI CASTG 1 cut(s) 301
XapI RAATTY 1 cut(s) 20
XcmI CCANNNNNNNNNTGG 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.