Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003968

Physical Location & Seq

Genomic Coordinates Reverse (-)

18526787 .. 18529742

Gene Structure 2956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG201700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGACCCAACTTCTCGGACCGGATTCCTCTTCAGATTCCGAAGTCACTGCACTCATCTGCACCTCTCTCACAAGTCACAATCGGTCTCTTGCGTCTCTGTCCCAGCCTCCCAAGTACACCAAGGTGGTCTTGATTGGTGACTCCGGCGTCGGCAAGTCCAATCTCCTCTCCAGCCTTCAGGGGCAGATTTGGTGGTTTGTGGTTGCATGTAGGTTTGTTGAGAGTGAAGACTATATATTTCTGTACTTGATTCAAAAGCTAGGTACCGTCAAAAAGCCCCTTGGTGCTAAGAAAACTGGGAAAACTGGGGGACTTGGTGCTCGCAAACTCACTACAAAGGAAATCTACGTTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0007275 GO:0008150 GO:0009555 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0010033 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap

Protein Analysis

118

Amino Acids

12.78

Weight (kDa)

9.33

Isoelectric Point (pI)

35.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003968)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0085051 RchiOBHm_Chr5g0037941
rosa_laevigata	RLG00000017994 RLG00000019454 RLG00000027093 RLG00000029383
rosa_multiflora	Rmu_sc0000509.1_g000001 Rmu_sc0003573.1_g000043 Rmu_sc0015807.1_g000003
rosa_roxburghii	Rroxscaffold_2G00129780 Rroxscaffold_6G00407110
rosa_rugosa	Rorug07G0294600 Rorug07G0319600
rosa_samantha	Rh1DG445800 Rh2AG168400 Rh2AG243600 Rh2AG243700 Rh2BG175400 Rh2BG201700 Rh2CG249000 Rh2DG173900 Rh2DG252100 Rh2DG252200 Rh3DG150400 Rh4AG146900 Rh4CG153500 Rh5AG355600 Rh5AG500800 Rh5AG500900 Rh5CG330400 Rh7BG445500 Rh7BG445600 Rh7BG445700
rosa_wichuraiana	Rw0G005140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	146
Acc65I	GGTACC	1 cut(s)	263
AccB1I	GGYRCC	1 cut(s)	263
AcuI	CTGAAG	2 cut(s)	15, 161
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	3 cut(s)	116, 245, 265
AgsI	TTSAA	1 cut(s)	254
AleI	CACNNNNGTG	1 cut(s)	122
AluBI	AGCT	1 cut(s)	259
AluI	AGCT	1 cut(s)	259
Alw21I	GWGCWC	1 cut(s)	322
Alw26I	GTCTC	2 cut(s)	90, 99
Asp718I	GGTACC	1 cut(s)	263
AspS9I	GGNCC	1 cut(s)	17
AsuHPI	GGTGA	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	17
BanI	GGYRCC	1 cut(s)	263
BbsI	GAAGAC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	322
BcgI	CGANNNNNNTGC	2 cut(s)	29, 63
BcoDI	GTCTC	2 cut(s)	90, 99
BfaI	CTAG	2 cut(s)	260, 355
Bme18I	GGWCC	1 cut(s)	17
BmgT120I	GGNCC	1 cut(s)	17
BmiI	GGNNCC	1 cut(s)	265
BmrI	ACTGGG	2 cut(s)	306, 315
BmuI	ACTGGG	2 cut(s)	306, 315
BpiI	GAAGAC	1 cut(s)	234
BpmI	CTGGAG	1 cut(s)	154
BsaHI	GRCGYC	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	120, 280
BsaWI	WCCGGW	1 cut(s)	19
Bse1I	ACTGG	2 cut(s)	301, 310
BseDI	CCNNGG	2 cut(s)	120, 280
BseNI	ACTGG	2 cut(s)	301, 310
BseRI	GAGGAG	1 cut(s)	155
BseYI	CCCAGC	1 cut(s)	102
BsgI	GTGCAG	2 cut(s)	33, 43
BshNI	GGYRCC	1 cut(s)	263
BsiHKAI	GWGCWC	1 cut(s)	322
BsiSI	CCGG	2 cut(s)	20, 144
BslFI	GGGAC	2 cut(s)	85, 324
BsmAI	GTCTC	2 cut(s)	90, 99
BsmBI	CGTCTC	1 cut(s)	99
BsmFI	GGGAC	2 cut(s)	85, 324
Bso31I	GGTCTC	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	322
BspLI	GGNNCC	1 cut(s)	265
BspT107I	GGYRCC	1 cut(s)	263
BspTNI	GGTCTC	1 cut(s)	90
BsrI	ACTGG	2 cut(s)	301, 310
BssECI	CCNNGG	2 cut(s)	120, 280
BssNI	GRCGYC	1 cut(s)	147
BssT1I	CCWWGG	2 cut(s)	120, 280
Bst4CI	ACNGT	1 cut(s)	268
Bst6I	CTCTTC	1 cut(s)	34
BstACI	GRCGYC	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	322
BstDEI	CTNAG	1 cut(s)	288
BstMAI	GTCTC	2 cut(s)	90, 99
BstNSI	RCATGY	1 cut(s)	210
BstV2I	GAAGAC	1 cut(s)	234
BtsI	GCAGTG	1 cut(s)	45
BtsIMutI	CAGTG	1 cut(s)	45
Cac8I	GCNNGC	1 cut(s)	322
Cfr13I	GGNCC	1 cut(s)	17
CpoI	CGGWCCG	1 cut(s)	17
CseI	GACGC	2 cut(s)	81, 136
Csp6I	GTAC	3 cut(s)	115, 244, 264
CspI	CGGWCCG	1 cut(s)	17
CviAII	CATG	1 cut(s)	207
CviJI	RGCY	4 cut(s)	106, 174, 259, 277
CviKI_1	RGCY	4 cut(s)	106, 174, 259, 277
CviQI	GTAC	3 cut(s)	115, 244, 264
DdeI	CTNAG	1 cut(s)	288
DrdI	GACNNNNNNGTC	1 cut(s)	146
DseDI	GACNNNNNNGTC	1 cut(s)	146
Eam1104I	CTCTTC	1 cut(s)	34
EarI	CTCTTC	1 cut(s)	34
Eco130I	CCWWGG	2 cut(s)	120, 280
Eco31I	GGTCTC	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	17
Eco57I	CTGAAG	2 cut(s)	15, 161
EcoT14I	CCWWGG	2 cut(s)	120, 280
ErhI	CCWWGG	2 cut(s)	120, 280
Esp3I	CGTCTC	1 cut(s)	99
FaeI	CATG	1 cut(s)	210
FaiI	YATR	3 cut(s)	208, 234, 236
FalI	AAGNNNNNCTT	2 cut(s)	113, 145
FaqI	GGGAC	2 cut(s)	85, 324
FatI	CATG	1 cut(s)	206
FspBI	CTAG	2 cut(s)	260, 355
GsaI	CCCAGC	1 cut(s)	106
GsuI	CTGGAG	1 cut(s)	154
HapII	CCGG	2 cut(s)	20, 144
HgaI	GACGC	2 cut(s)	81, 136
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	1 cut(s)	210
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HinfI	GANTC	4 cut(s)	23, 35, 140, 250
HpaII	CCGG	2 cut(s)	20, 144
HphI	GGTGA	1 cut(s)	149
Hpy166II	GTNNAC	2 cut(s)	117, 352
Hpy188I	TCNGA	3 cut(s)	17, 34, 40
Hpy188III	TCNNGA	1 cut(s)	130
Hpy8I	GTNNAC	2 cut(s)	117, 352
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	1 cut(s)	185
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	3 cut(s)	50, 60, 206
HpyF3I	CTNAG	1 cut(s)	288
HpySE526I	ACGT	1 cut(s)	348
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	1 cut(s)	210
KpnI	GGTACC	1 cut(s)	267
LpnPI	CCDG	7 cut(s)	33, 116, 157, 164, 184, 282, 291
MaeI	CTAG	2 cut(s)	260, 355
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	3 cut(s)	43, 74, 137
MboII	GAAGA	2 cut(s)	21, 239
MhlI	GDGCHC	1 cut(s)	322
MlyI	GAGTC	1 cut(s)	134
MnlI	CCTC	4 cut(s)	37, 73, 117, 176
MslI	CAYNNNNRTG	1 cut(s)	122
MspI	CCGG	2 cut(s)	20, 144
NlaIII	CATG	1 cut(s)	210
NlaIV	GGNNCC	1 cut(s)	265
NmuCI	GTSAC	3 cut(s)	43, 74, 137
NspI	RCATGY	1 cut(s)	210
OliI	CACNNNNGTG	1 cut(s)	122
PfeI	GAWTC	3 cut(s)	23, 35, 250
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
PspFI	CCCAGC	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	265
PspPI	GGNCC	1 cut(s)	17
RsaI	GTAC	3 cut(s)	116, 245, 265
RsaNI	GTAC	3 cut(s)	115, 244, 264
RseI	CAYNNNNRTG	1 cut(s)	122
Rsr2I	CGGWCCG	1 cut(s)	17
RsrII	CGGWCCG	1 cut(s)	17
Sau96I	GGNCC	1 cut(s)	17
SchI	GAGTC	1 cut(s)	134
SduI	GDGCHC	1 cut(s)	322
SetI	ASST	6 cut(s)	65, 126, 215, 261, 265, 351
SinI	GGWCC	1 cut(s)	17
SmiMI	CAYNNNNRTG	1 cut(s)	122
SspMI	CTAG	2 cut(s)	260, 355
StyI	CCWWGG	2 cut(s)	120, 280
TaaI	ACNGT	1 cut(s)	268
TaiI	ACGT	1 cut(s)	351
TaqII	GACCGA	1 cut(s)	72
TatI	WGTACW	2 cut(s)	114, 243
TfiI	GAWTC	3 cut(s)	23, 35, 250
TscAI	CASTG	1 cut(s)	52
TseFI	GTSAC	3 cut(s)	43, 74, 137
Tsp45I	GTSAC	3 cut(s)	43, 74, 137
TspRI	CASTG	1 cut(s)	52
VpaK11BI	GGWCC	1 cut(s)	17
XceI	RCATGY	1 cut(s)	210
XspI	CTAG	2 cut(s)	260, 355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.