Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003968

Physical Location & Seq

Genomic Coordinates Reverse (-)

52173741 .. 52176359

Gene Structure 2619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019454

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGGATTCAATGGTGAAATTTCTGACCATAGTCATGATAGTGAAGAATTGAGGGATTTGGTGGAAGAAACTGAAAGTGATGATGAAGAAGGTGAGTCAACAAGTAAACCAAAGAAAAATAGGAGACAAAAACTTATGAGAGGCAGAACTTGGGTTCCTGAGAGAGACATGAAGGATCCACAGTTTGAAGTTAACCAACAGTTTGCCAACGCAGCACAATTCAAGGCTGCTGTCAAGAAGTATGTTGTGAAAACAGGATATAATCTGTTTTTTAAGAAGAATGCAGGTGTTAAAGTAGAGGTTGCATGTGGAAAGAAGCACAAGGGTAAAAGGGAGACTTGGCCTTGTCAATTTTGGATCTCTGCTAGTGAAATCAAGGGTAAGGAACCAGAATTGATTATCAAGTCAATCAATTTGAATCATAAGAATTGTGAAACGGTTTCAAGAGTGAAGTTTTGTACTTCTACATTTTTAGCAGAAGAGTATGTACAAATGTGGAAAGCTGATCCATATATGTCTAGAAAACTCTTCCAAGAAGTAGTATCTCAAGATTTTGGTCAAACCATTTCACACAAGCAGGTTGTAAGAGCAAGGAGGCTAGCTGCACTTATGAATTCTGGGAATGAGGCAGACCAATATAATCTCTTGGAAACCTATGTTGAGGCGCGGGGCAATGGAGACAATGAAAATGGAGATCATGACAATGGAGAAAGTGGTAATCGAGACGATACCAATGGAAATGAAGGCAGGGGTCAGCAGGTTGCCAAAATAGCACCAAGGAGGGGTCAGACCTCTAAGGCACCTAGTCATGCCATCCAAAAATCACCGAATCCTTCATCAAGCCAACCATCACCTGCAACTTTCTCACAACAACCAGTGTTACCAACCAATATTTCACAATCCACTCCAGTTAAGGCGAAACCAAAAATGCCAAAGCAGCCACCTAAAAGCCTGTGTGGAAAAAGTAAAGGTTGTCATGCCTTGATGGAGTATATTTTTGTGGGAATTGGGATACATGTAATGCCTTGTTCCTTGGTTAATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBD_Tnp_Mut MULE SWIM

Protein Analysis

349

Amino Acids

38.99

Weight (kDa)

9.06

Isoelectric Point (pI)

44.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003968)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0085051 RchiOBHm_Chr5g0037941
rosa_laevigata	RLG00000017994 RLG00000019454 RLG00000027093 RLG00000029383
rosa_multiflora	Rmu_sc0000509.1_g000001 Rmu_sc0003573.1_g000043 Rmu_sc0015807.1_g000003
rosa_roxburghii	Rroxscaffold_2G00129780 Rroxscaffold_6G00407110
rosa_rugosa	Rorug07G0294600 Rorug07G0319600
rosa_samantha	Rh1DG445800 Rh2AG168400 Rh2AG243600 Rh2AG243700 Rh2BG175400 Rh2BG201700 Rh2CG249000 Rh2DG173900 Rh2DG252100 Rh2DG252200 Rh3DG150400 Rh4AG146900 Rh4CG153500 Rh5AG355600 Rh5AG500800 Rh5AG500900 Rh5CG330400 Rh7BG445500 Rh7BG445600 Rh7BG445700
rosa_wichuraiana	Rw0G005140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	275, 862
Acc36I	ACCTGC	4 cut(s)	275, 568, 748, 862
AccB1I	GGYRCC	1 cut(s)	799
AccII	CGCG	1 cut(s)	667
AciI	CCGC	1 cut(s)	667
AclWI	GGATC	4 cut(s)	170, 183, 365, 500
AcsI	RAATTY	2 cut(s)	18, 613
AfaI	GTAC	2 cut(s)	460, 489
AfiI	CCNNNNNNNGG	1 cut(s)	782
AflIII	ACRYGT	1 cut(s)	1015
AgsI	TTSAA	5 cut(s)	10, 188, 223, 418, 444
AjuI	GAANNNNNNNTTGG	2 cut(s)	877, 909
AloI	GAACNNNNNNTCC	2 cut(s)	139, 171
AluBI	AGCT	2 cut(s)	503, 602
AluI	AGCT	2 cut(s)	503, 602
Alw26I	GTCTC	5 cut(s)	118, 159, 329, 672, 717
AlwI	GGATC	4 cut(s)	170, 183, 365, 500
AoxI	GGCC	1 cut(s)	341
ApeKI	GCWGC	4 cut(s)	212, 227, 602, 937
ApoI	RAATTY	2 cut(s)	18, 613
AspLEI	GCGC	1 cut(s)	667
AsuHPI	GGTGA	4 cut(s)	26, 104, 816, 843
AsuNHI	GCTAGC	1 cut(s)	598
BamHI	GGATCC	1 cut(s)	175
BanI	GGYRCC	1 cut(s)	799
BarI	GAAGNNNNNNTAC	2 cut(s)	471, 503
BbvI	GCAGC	4 cut(s)	214, 224, 589, 949
BccI	CCATC	3 cut(s)	821, 856, 979
BciVI	GTATCC	1 cut(s)	1005
BcoDI	GTCTC	5 cut(s)	118, 159, 329, 672, 717
BfaI	CTAG	4 cut(s)	366, 519, 599, 804
BfuAI	ACCTGC	4 cut(s)	275, 568, 748, 862
BfuI	GTATCC	1 cut(s)	1005
BisI	GCNGC	4 cut(s)	213, 228, 603, 938
BlsI	GCNGC	4 cut(s)	214, 229, 604, 939
BmiI	GGNNCC	4 cut(s)	156, 177, 387, 801
BmtI	GCTAGC	1 cut(s)	602
BoxI	GACNNNNGTC	1 cut(s)	30
BpmI	CTGGAG	1 cut(s)	891
BpuEI	CTTGAG	1 cut(s)	531
BsaJI	CCNNGG	2 cut(s)	776, 1032
Bsc4I	CCNNNNNNNGG	1 cut(s)	782
Bse1I	ACTGG	2 cut(s)	875, 908
Bse3DI	GCAATG	1 cut(s)	679
BseDI	CCNNGG	2 cut(s)	776, 1032
BseGI	GGATG	1 cut(s)	813
BseLI	CCNNNNNNNGG	1 cut(s)	782
BseMI	GCAATG	1 cut(s)	679
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	2 cut(s)	875, 908
BseXI	GCAGC	4 cut(s)	214, 224, 589, 949
BsgI	GTGCAG	1 cut(s)	588
Bsh1236I	CGCG	1 cut(s)	667
BshFI	GGCC	1 cut(s)	343
BshNI	GGYRCC	1 cut(s)	799
BslI	CCNNNNNNNGG	1 cut(s)	782
BsmAI	GTCTC	5 cut(s)	118, 159, 329, 672, 717
BsmBI	CGTCTC	1 cut(s)	717
BsmI	GAATGC	1 cut(s)	286
BsnI	GGCC	1 cut(s)	343
Bsp1407I	TGTACA	1 cut(s)	487
Bsp143I	GATC	4 cut(s)	175, 357, 505, 694
BspACI	CCGC	1 cut(s)	667
BspANI	GGCC	1 cut(s)	343
BspCNI	CTCAG	1 cut(s)	151
BspFNI	CGCG	1 cut(s)	667
BspHI	TCATGA	2 cut(s)	34, 697
BspLI	GGNNCC	4 cut(s)	156, 177, 387, 801
BspMI	ACCTGC	4 cut(s)	275, 568, 748, 862
BspOI	GCTAGC	1 cut(s)	602
BspPI	GGATC	4 cut(s)	170, 183, 365, 500
BspT107I	GGYRCC	1 cut(s)	799
BsrDI	GCAATG	1 cut(s)	679
BsrGI	TGTACA	1 cut(s)	487
BsrI	ACTGG	2 cut(s)	875, 908
BssECI	CCNNGG	2 cut(s)	776, 1032
BssMI	GATC	4 cut(s)	175, 357, 505, 694
BssT1I	CCWWGG	2 cut(s)	776, 1032
Bst4CI	ACNGT	3 cut(s)	183, 201, 439
Bst6I	CTCTTC	2 cut(s)	474, 533
BstAUI	TGTACA	1 cut(s)	487
BstC8I	GCNNGC	1 cut(s)	600
BstDEI	CTNAG	2 cut(s)	159, 795
BstF5I	GGATG	1 cut(s)	813
BstFNI	CGCG	1 cut(s)	667
BstHHI	GCGC	1 cut(s)	667
BstKTI	GATC	4 cut(s)	178, 360, 508, 697
BstMAI	GTCTC	5 cut(s)	118, 159, 329, 672, 717
BstMBI	GATC	4 cut(s)	175, 357, 505, 694
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 770, 937
BstNSI	RCATGY	2 cut(s)	309, 1019
BstPAI	GACNNNNGTC	1 cut(s)	30
BstUI	CGCG	1 cut(s)	667
BstV1I	GCAGC	4 cut(s)	214, 224, 589, 949
BstX2I	RGATCY	2 cut(s)	175, 357
BstYI	RGATCY	2 cut(s)	175, 357
BsuI	GTATCC	1 cut(s)	1005
BsuRI	GGCC	1 cut(s)	343
BtsCI	GGATG	1 cut(s)	813
BtsIMutI	CAGTG	1 cut(s)	882
BveI	ACCTGC	4 cut(s)	275, 568, 748, 862
Cac8I	GCNNGC	1 cut(s)	600
CciI	TCATGA	2 cut(s)	34, 697
CfoI	GCGC	1 cut(s)	667
Csp6I	GTAC	2 cut(s)	459, 488
CviAII	CATG	7 cut(s)	35, 169, 306, 698, 809, 977, 1016
CviJI	RGCY	8 cut(s)	227, 343, 503, 598, 602, 843, 940, 951
CviKI_1	RGCY	8 cut(s)	227, 343, 503, 598, 602, 843, 940, 951
CviQI	GTAC	2 cut(s)	459, 488
DdeI	CTNAG	2 cut(s)	159, 795
DpnI	GATC	4 cut(s)	177, 359, 507, 696
DpnII	GATC	4 cut(s)	175, 357, 505, 694
Eam1104I	CTCTTC	2 cut(s)	474, 533
EarI	CTCTTC	2 cut(s)	474, 533
Eco130I	CCWWGG	2 cut(s)	776, 1032
EcoRI	GAATTC	1 cut(s)	613
EcoT14I	CCWWGG	2 cut(s)	776, 1032
ErhI	CCWWGG	2 cut(s)	776, 1032
Esp3I	CGTCTC	1 cut(s)	717
FaeI	CATG	7 cut(s)	38, 172, 309, 701, 812, 980, 1019
FalI	AAGNNNNNCTT	2 cut(s)	322, 354
FatI	CATG	7 cut(s)	34, 168, 305, 697, 808, 976, 1015
FauI	CCCGC	1 cut(s)	660
Fnu4HI	GCNGC	4 cut(s)	213, 228, 603, 938
FokI	GGATG	1 cut(s)	800
Fsp4HI	GCNGC	4 cut(s)	213, 228, 603, 938
FspBI	CTAG	4 cut(s)	366, 519, 599, 804
GlaI	GCGC	1 cut(s)	666
GluI	GCNGC	4 cut(s)	213, 228, 603, 938
GsuI	CTGGAG	1 cut(s)	891
HaeIII	GGCC	1 cut(s)	343
HhaI	GCGC	1 cut(s)	667
Hin1II	CATG	7 cut(s)	38, 172, 309, 701, 812, 980, 1019
Hin6I	GCGC	1 cut(s)	665
HinP1I	GCGC	1 cut(s)	665
HincII	GTYRAC	2 cut(s)	99, 193
HindII	GTYRAC	2 cut(s)	99, 193
HinfI	GANTC	4 cut(s)	6, 95, 418, 829
HpaI	GTTAAC	1 cut(s)	193
HphI	GGTGA	4 cut(s)	26, 104, 816, 843
Hpy166II	GTNNAC	3 cut(s)	99, 107, 193
Hpy188I	TCNGA	2 cut(s)	25, 789
Hpy188III	TCNNGA	8 cut(s)	35, 158, 235, 444, 519, 548, 698, 722
Hpy8I	GTNNAC	3 cut(s)	99, 107, 193
HpyAV	CCTTC	4 cut(s)	83, 166, 737, 843
HpyCH4III	ACNGT	3 cut(s)	183, 201, 439
HpyCH4V	TGCA	4 cut(s)	284, 305, 605, 857
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 770, 937
HpyF3I	CTNAG	2 cut(s)	159, 795
Hsp92II	CATG	7 cut(s)	38, 172, 309, 701, 812, 980, 1019
HspAI	GCGC	1 cut(s)	665
KspAI	GTTAAC	1 cut(s)	193
Kzo9I	GATC	4 cut(s)	175, 357, 505, 694
Lsp1109I	GCAGC	4 cut(s)	214, 224, 589, 949
MaeI	CTAG	4 cut(s)	366, 519, 599, 804
MaeIII	GTNAC	1 cut(s)	879
MalI	GATC	4 cut(s)	177, 359, 507, 696
MboI	GATC	4 cut(s)	175, 357, 505, 694
MboII	GAAGA	6 cut(s)	56, 77, 98, 289, 491, 520
MflI	RGATCY	2 cut(s)	175, 357
MluCI	AATT	9 cut(s)	18, 47, 218, 350, 392, 412, 427, 613, 1005
MlyI	GAGTC	1 cut(s)	104
MnlI	CCTC	8 cut(s)	45, 134, 292, 588, 619, 655, 774, 802
MseI	TTAA	5 cut(s)	192, 273, 291, 912, 1038
MslI	CAYNNNNRTG	3 cut(s)	33, 39, 702
Mva1269I	GAATGC	1 cut(s)	286
MvnI	CGCG	1 cut(s)	667
MwoI	GCNNNNNNNGC	3 cut(s)	212, 770, 937
NdeII	GATC	4 cut(s)	175, 357, 505, 694
NheI	GCTAGC	1 cut(s)	598
NlaIII	CATG	7 cut(s)	38, 172, 309, 701, 812, 980, 1019
NlaIV	GGNNCC	4 cut(s)	156, 177, 387, 801
NspI	RCATGY	2 cut(s)	309, 1019
PagI	TCATGA	2 cut(s)	34, 697
PaqCI	CACCTGC	2 cut(s)	275, 862
PciI	ACATGT	1 cut(s)	1015
PctI	GAATGC	1 cut(s)	286
PfeI	GAWTC	3 cut(s)	6, 418, 829
PkrI	GCNGC	4 cut(s)	214, 229, 604, 939
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
PscI	ACATGT	1 cut(s)	1015
PshAI	GACNNNNGTC	1 cut(s)	30
PspN4I	GGNNCC	4 cut(s)	156, 177, 387, 801
PsuI	RGATCY	2 cut(s)	175, 357
RsaI	GTAC	2 cut(s)	460, 489
RsaNI	GTAC	2 cut(s)	459, 488
RseI	CAYNNNNRTG	3 cut(s)	33, 39, 702
SaqAI	TTAA	5 cut(s)	192, 273, 291, 912, 1038
SatI	GCNGC	4 cut(s)	213, 228, 603, 938
Sau3AI	GATC	4 cut(s)	175, 357, 505, 694
SchI	GAGTC	1 cut(s)	104
SmiMI	CAYNNNNRTG	3 cut(s)	33, 39, 702
SmlI	CTYRAG	1 cut(s)	546
SmoI	CTYRAG	1 cut(s)	546
Sse9I	AATT	9 cut(s)	18, 47, 218, 350, 392, 412, 427, 613, 1005
SsiI	CCGC	1 cut(s)	667
SspI	AATATT	1 cut(s)	892
SspMI	CTAG	4 cut(s)	366, 519, 599, 804
StyI	CCWWGG	2 cut(s)	776, 1032
TaaI	ACNGT	3 cut(s)	183, 201, 439
TaqI	TCGA	1 cut(s)	721
TasI	AATT	9 cut(s)	18, 47, 218, 350, 392, 412, 427, 613, 1005
TatI	WGTACW	2 cut(s)	458, 487
TfiI	GAWTC	3 cut(s)	6, 418, 829
Tru1I	TTAA	5 cut(s)	192, 273, 291, 912, 1038
Tru9I	TTAA	5 cut(s)	192, 273, 291, 912, 1038
TscAI	CASTG	1 cut(s)	882
TseI	GCWGC	4 cut(s)	212, 227, 602, 937
TspDTI	ATGAA	6 cut(s)	99, 185, 626, 699, 756, 825
TspRI	CASTG	1 cut(s)	882
XapI	RAATTY	2 cut(s)	18, 613
XbaI	TCTAGA	1 cut(s)	518
XceI	RCATGY	2 cut(s)	309, 1019
XspI	CTAG	4 cut(s)	366, 519, 599, 804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.