Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003968

Physical Location & Seq

Genomic Coordinates Forward (+)

26789914 .. 26792768

Gene Structure 2855 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG243700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGGTAAAAGGAAGGCAGGAGACATAGATAAGGGTGAAGGTTATAGTGAGGATGATGATGACAATGTACATGATAGAGTGAATATAGATAAAGATGGAAGTTTTGATGAGGATTACGTGCATAGTGATTGTGAGATATTGCCAGGGGATGAAGGATATGGTAAAGATGGACAAGATGACTTGGAATATGAGGAGAATGTTGATAACCGTGATGTGTATGATGAGTATGCTGACATGGGATTCAATGGTGAAATTTCTGACCATAGCCATGATAGTGAAGAATTGAGGGATTTGGTTGAAGAATTGAGGGATTTGGTGGAAGAAACTGAAAGTGATGATGAAGCAGGTGAGTCAACAAGTAAACCAAAGAAAAATAGGAGACAAAAACTTATGAGTGGCAGAACTTGGGTTCCTGAGAGAGACATGAAGGATCCACAGTTTGAAGTTAACCAACAGTTTGCCAACGCATCACAATTCAAGGCTGTTGTCAAGAAGTATGCTGTGAAAATTGGATATAATCTATTTTTTAAGAAGAATGCAGGTGTTAAAGTAGAGGTTGCATGCGGAAAGAAGCACAAGGGTAAAAGGGAGACTTGGCCTTTTCAATTTTGGATCTCTGCTAGTGTAATCAAGGGTAAGGAACCAGAATTGATTATCAAGTCAATCAATTTGAATCACAAGAATTGTGAAACGGTTTCAAGAGTTGCCAAAATAGCACCAAGGAGGGGTCAGACCTCCAAGGCACCTAGTCATGCCATTGAAATATCACCGAATCCTTCATCAAGCCAACCATCACCTACAACTTTCTCACACCAACCAGTGTTTCACAACCTACTCCAGTTAAGGCGAAACCCAAAATGCCAAAGCAGCCACCTAAAAAGCCTATGTGGAAAAACTAAAGGTTGTCATACCTTGATGGAGTATATTTTTGTGGGAATTGGGATGCATTATGCTCATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBD_Tnp_Mut MULE SWIM

Protein Analysis

320

Amino Acids

36.28

Weight (kDa)

5.75

Isoelectric Point (pI)

51.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003968)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0085051 RchiOBHm_Chr5g0037941
rosa_laevigata	RLG00000017994 RLG00000019454 RLG00000027093 RLG00000029383
rosa_multiflora	Rmu_sc0000509.1_g000001 Rmu_sc0003573.1_g000043 Rmu_sc0015807.1_g000003
rosa_roxburghii	Rroxscaffold_2G00129780 Rroxscaffold_6G00407110
rosa_rugosa	Rorug07G0294600 Rorug07G0319600
rosa_samantha	Rh1DG445800 Rh2AG168400 Rh2AG243600 Rh2AG243700 Rh2BG175400 Rh2BG201700 Rh2CG249000 Rh2DG173900 Rh2DG252100 Rh2DG252200 Rh3DG150400 Rh4AG146900 Rh4CG153500 Rh5AG355600 Rh5AG500800 Rh5AG500900 Rh5CG330400 Rh7BG445500 Rh7BG445600 Rh7BG445700
rosa_wichuraiana	Rw0G005140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	335, 530
Acc36I	ACCTGC	2 cut(s)	335, 530
AccB1I	GGYRCC	1 cut(s)	742
AciI	CCGC	1 cut(s)	564
AclWI	GGATC	3 cut(s)	425, 438, 620
AcsI	RAATTY	1 cut(s)	252
AfaI	GTAC	1 cut(s)	69
AfiI	CCNNNNNNNGG	1 cut(s)	725
AgsI	TTSAA	8 cut(s)	244, 299, 443, 478, 605, 673, 699, 761
AjnI	CCWGG	1 cut(s)	142
AjuI	GAANNNNNNNTTGG	2 cut(s)	807, 839
AloI	GAACNNNNNNTCC	2 cut(s)	394, 426
Alw26I	GTCTC	4 cut(s)	15, 373, 414, 584
AlwI	GGATC	3 cut(s)	425, 438, 620
AoxI	GGCC	1 cut(s)	596
ApeKI	GCWGC	1 cut(s)	867
ApoI	RAATTY	1 cut(s)	252
AsuHPI	GGTGA	5 cut(s)	47, 260, 359, 759, 786
BamHI	GGATCC	1 cut(s)	430
BanI	GGYRCC	1 cut(s)	742
BbvI	GCAGC	1 cut(s)	879
BccI	CCATC	4 cut(s)	89, 161, 799, 910
BciT130I	CCWGG	1 cut(s)	144
BcoDI	GTCTC	4 cut(s)	15, 373, 414, 584
BfaI	CTAG	2 cut(s)	621, 747
BfuAI	ACCTGC	2 cut(s)	335, 530
BisI	GCNGC	1 cut(s)	868
BlsI	GCNGC	1 cut(s)	869
Bme1390I	CCNGG	1 cut(s)	144
BmiI	GGNNCC	4 cut(s)	411, 432, 642, 744
BmrFI	CCNGG	1 cut(s)	144
BmsI	GCATC	2 cut(s)	476, 933
BpmI	CTGGAG	1 cut(s)	821
BsaAI	YACGTR	1 cut(s)	118
BsaJI	CCNNGG	3 cut(s)	143, 719, 738
Bsc4I	CCNNNNNNNGG	1 cut(s)	725
Bse1I	ACTGG	2 cut(s)	818, 838
BseBI	CCWGG	1 cut(s)	144
BseDI	CCNNGG	3 cut(s)	143, 719, 738
BseGI	GGATG	3 cut(s)	58, 154, 948
BseLI	CCNNNNNNNGG	1 cut(s)	725
BseMII	CTCAG	1 cut(s)	405
BseNI	ACTGG	2 cut(s)	818, 838
BseRI	GAGGAG	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	879
BshFI	GGCC	1 cut(s)	598
BshNI	GGYRCC	1 cut(s)	742
BslI	CCNNNNNNNGG	1 cut(s)	725
BsmAI	GTCTC	4 cut(s)	15, 373, 414, 584
BsmI	GAATGC	1 cut(s)	541
BsnI	GGCC	1 cut(s)	598
Bsp1407I	TGTACA	1 cut(s)	67
Bsp143I	GATC	2 cut(s)	430, 612
BspACI	CCGC	1 cut(s)	564
BspANI	GGCC	1 cut(s)	598
BspCNI	CTCAG	1 cut(s)	406
BspLI	GGNNCC	4 cut(s)	411, 432, 642, 744
BspMI	ACCTGC	2 cut(s)	335, 530
BspPI	GGATC	3 cut(s)	425, 438, 620
BspT107I	GGYRCC	1 cut(s)	742
BsrGI	TGTACA	1 cut(s)	67
BsrI	ACTGG	2 cut(s)	818, 838
BssECI	CCNNGG	3 cut(s)	143, 719, 738
BssMI	GATC	2 cut(s)	430, 612
BssT1I	CCWWGG	2 cut(s)	719, 738
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	4 cut(s)	209, 438, 456, 694
BstAUI	TGTACA	1 cut(s)	67
BstBAI	YACGTR	1 cut(s)	118
BstC8I	GCNNGC	1 cut(s)	562
BstDEI	CTNAG	1 cut(s)	414
BstF5I	GGATG	3 cut(s)	58, 154, 948
BstKTI	GATC	2 cut(s)	433, 615
BstMAI	GTCTC	4 cut(s)	15, 373, 414, 584
BstMBI	GATC	2 cut(s)	430, 612
BstMWI	GCNNNNNNNGC	2 cut(s)	713, 867
BstNI	CCWGG	1 cut(s)	144
BstNSI	RCATGY	1 cut(s)	564
BstSCI	CCNGG	1 cut(s)	142
BstV1I	GCAGC	1 cut(s)	879
BstX2I	RGATCY	2 cut(s)	430, 612
BstYI	RGATCY	2 cut(s)	430, 612
BsuRI	GGCC	1 cut(s)	598
BtsCI	GGATG	3 cut(s)	58, 154, 948
BtsIMutI	CAGTG	1 cut(s)	825
BveI	ACCTGC	2 cut(s)	335, 530
Cac8I	GCNNGC	1 cut(s)	562
Csp6I	GTAC	1 cut(s)	68
CviAII	CATG	7 cut(s)	71, 235, 269, 424, 561, 752, 956
CviJI	RGCY	6 cut(s)	267, 482, 598, 786, 870, 882
CviKI_1	RGCY	6 cut(s)	267, 482, 598, 786, 870, 882
CviQI	GTAC	1 cut(s)	68
DdeI	CTNAG	1 cut(s)	414
DpnI	GATC	2 cut(s)	432, 614
DpnII	GATC	2 cut(s)	430, 612
Eco130I	CCWWGG	2 cut(s)	719, 738
EcoRII	CCWGG	1 cut(s)	142
EcoT14I	CCWWGG	2 cut(s)	719, 738
EcoT22I	ATGCAT	1 cut(s)	948
ErhI	CCWWGG	2 cut(s)	719, 738
FaeI	CATG	7 cut(s)	74, 238, 272, 427, 564, 755, 959
FalI	AAGNNNNNCTT	2 cut(s)	577, 609
FatI	CATG	7 cut(s)	70, 234, 268, 423, 560, 751, 955
Fnu4HI	GCNGC	1 cut(s)	868
FokI	GGATG	3 cut(s)	65, 161, 955
Fsp4HI	GCNGC	1 cut(s)	868
FspBI	CTAG	2 cut(s)	621, 747
GluI	GCNGC	1 cut(s)	868
GsuI	CTGGAG	1 cut(s)	821
HaeIII	GGCC	1 cut(s)	598
Hin1II	CATG	7 cut(s)	74, 238, 272, 427, 564, 755, 959
HincII	GTYRAC	2 cut(s)	354, 448
HindII	GTYRAC	2 cut(s)	354, 448
HinfI	GANTC	4 cut(s)	240, 350, 673, 772
HpaI	GTTAAC	1 cut(s)	448
HphI	GGTGA	5 cut(s)	47, 260, 359, 759, 786
Hpy166II	GTNNAC	3 cut(s)	354, 362, 448
Hpy188I	TCNGA	2 cut(s)	259, 732
Hpy188III	TCNNGA	3 cut(s)	413, 490, 699
Hpy8I	GTNNAC	3 cut(s)	354, 362, 448
HpyAV	CCTTC	5 cut(s)	7, 32, 146, 421, 786
HpyCH4III	ACNGT	4 cut(s)	209, 438, 456, 694
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	4 cut(s)	121, 539, 560, 946
HpyF10VI	GCNNNNNNNGC	2 cut(s)	713, 867
HpyF3I	CTNAG	1 cut(s)	414
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	7 cut(s)	74, 238, 272, 427, 564, 755, 959
KspAI	GTTAAC	1 cut(s)	448
Kzo9I	GATC	2 cut(s)	430, 612
LpnPI	CCDG	9 cut(s)	3, 129, 156, 330, 426, 525, 657, 831, 851
Lsp1109I	GCAGC	1 cut(s)	879
LweI	GCATC	2 cut(s)	476, 933
MaeI	CTAG	2 cut(s)	621, 747
MaeII	ACGT	1 cut(s)	117
MalI	GATC	2 cut(s)	432, 614
MboI	GATC	2 cut(s)	430, 612
MboII	GAAGA	4 cut(s)	290, 311, 332, 544
MflI	RGATCY	2 cut(s)	430, 612
MlyI	GAGTC	1 cut(s)	359
MnlI	CCTC	8 cut(s)	43, 103, 184, 279, 300, 547, 717, 745
Mph1103I	ATGCAT	1 cut(s)	948
MseI	TTAA	4 cut(s)	447, 528, 546, 842
MslI	CAYNNNNRTG	2 cut(s)	267, 273
MspR9I	CCNGG	1 cut(s)	144
Mva1269I	GAATGC	1 cut(s)	541
MvaI	CCWGG	1 cut(s)	144
MwoI	GCNNNNNNNGC	2 cut(s)	713, 867
NdeII	GATC	2 cut(s)	430, 612
NlaIII	CATG	7 cut(s)	74, 238, 272, 427, 564, 755, 959
NlaIV	GGNNCC	4 cut(s)	411, 432, 642, 744
NsiI	ATGCAT	1 cut(s)	948
NspI	RCATGY	1 cut(s)	564
PaeI	GCATGC	1 cut(s)	564
PaqCI	CACCTGC	2 cut(s)	335, 530
PctI	GAATGC	1 cut(s)	541
PfeI	GAWTC	3 cut(s)	240, 673, 772
PkrI	GCNGC	1 cut(s)	869
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
Ppu21I	YACGTR	1 cut(s)	118
Psp6I	CCWGG	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	142
PspN4I	GGNNCC	4 cut(s)	411, 432, 642, 744
PsuI	RGATCY	2 cut(s)	430, 612
RsaI	GTAC	1 cut(s)	69
RsaNI	GTAC	1 cut(s)	68
RseI	CAYNNNNRTG	2 cut(s)	267, 273
SaqAI	TTAA	4 cut(s)	447, 528, 546, 842
SatI	GCNGC	1 cut(s)	868
Sau3AI	GATC	2 cut(s)	430, 612
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	1 cut(s)	144
SfaNI	GCATC	2 cut(s)	476, 933
SmiMI	CAYNNNNRTG	2 cut(s)	267, 273
SphI	GCATGC	1 cut(s)	564
SsiI	CCGC	1 cut(s)	564
SspMI	CTAG	2 cut(s)	621, 747
StyD4I	CCNGG	1 cut(s)	142
StyI	CCWWGG	2 cut(s)	719, 738
TaaI	ACNGT	4 cut(s)	209, 438, 456, 694
TaiI	ACGT	1 cut(s)	120
TatI	WGTACW	1 cut(s)	67
TfiI	GAWTC	3 cut(s)	240, 673, 772
Tru1I	TTAA	4 cut(s)	447, 528, 546, 842
Tru9I	TTAA	4 cut(s)	447, 528, 546, 842
TscAI	CASTG	1 cut(s)	825
TseI	GCWGC	1 cut(s)	867
TspDTI	ATGAA	4 cut(s)	165, 354, 440, 768
TspRI	CASTG	1 cut(s)	825
XapI	RAATTY	1 cut(s)	252
XceI	RCATGY	1 cut(s)	564
XspI	CTAG	2 cut(s)	621, 747
Zsp2I	ATGCAT	1 cut(s)	948

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.