Rh2AG243600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0003968
Physical Location & Seq
Forward (+)
26788694 .. 26789804
1111 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG243600.1

Sequence Viewer

Length: 402 bp
ATGGTGGAAATCAAAGATATGGAAGAGTTTTCGGGAGAATTTCGGATTTTGGGTCAACCCACATATAACAGTCAAGGTTTCACTCTTCAAATACATCATGGAGGTGATTTTGTCAAAGAGGCTGCTGGGCATAAATATGAGGGAGGTCAACTGTGTTGGGCAGAGTTGCTAGACCCAGACAAGATTTCTTGGATAGAGCTCAATACTTTTGCTTGGAGGTTGGGATATAGGAAGCCACCAGTGCACTATTGGTTCAAGCATCCTAACATGTCAGTATTCTTGCCGATAACCAAAGATGAGAATGTACAAAAGATGGTGAGGCTACTGCCAAGTTCCAGGATTATACAAATTTATTATGTTGGTGGAGGGCAGAGGCAAGTCGAACTTGCGGAAATGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

133

Amino Acids

15.49

Weight (kDa)

5.95

Isoelectric Point (pI)

41.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1-like PF26130 26 - 119 3.3e-16 PB1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 389
AcsI RAATTY 2 cut(s) 38, 348
AfaI GTAC 1 cut(s) 306
AflIII ACRYGT 1 cut(s) 267
AgsI TTSAA 2 cut(s) 89, 256
AjnI CCWGG 1 cut(s) 335
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
Alw21I GWGCWC 2 cut(s) 201, 246
Alw44I GTGCAC 1 cut(s) 242
ApaLI GTGCAC 1 cut(s) 242
ApeKI GCWGC 1 cut(s) 122
ApoI RAATTY 2 cut(s) 38, 348
AsuHPI GGTGA 2 cut(s) 116, 328
BaeGI GKGCMC 1 cut(s) 246
BanII GRGCYC 1 cut(s) 201
Bbv12I GWGCWC 2 cut(s) 201, 246
BbvI GCAGC 1 cut(s) 109
BccI CCATC 1 cut(s) 307
BciT130I CCWGG 1 cut(s) 337
BfaI CTAG 1 cut(s) 170
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
Bme1390I CCNGG 1 cut(s) 337
BmrFI CCNGG 1 cut(s) 337
BmsI GCATC 1 cut(s) 268
Bse1I ACTGG 1 cut(s) 239
BseBI CCWGG 1 cut(s) 337
BseGI GGATG 1 cut(s) 259
BseNI ACTGG 1 cut(s) 239
BseSI GKGCMC 1 cut(s) 246
BseXI GCAGC 1 cut(s) 109
BseYI CCCAGC 1 cut(s) 125
BsiHKAI GWGCWC 2 cut(s) 201, 246
Bsp1286I GDGCHC 2 cut(s) 201, 246
Bsp1407I TGTACA 1 cut(s) 304
BspACI CCGC 1 cut(s) 389
BsrGI TGTACA 1 cut(s) 304
BsrI ACTGG 1 cut(s) 239
Bst2UI CCWGG 1 cut(s) 337
Bst4CI ACNGT 2 cut(s) 71, 153
Bst6I CTCTTC 2 cut(s) 18, 90
BstAUI TGTACA 1 cut(s) 304
BstF5I GGATG 1 cut(s) 259
BstMWI GCNNNNNNNGC 1 cut(s) 241
BstNI CCWGG 1 cut(s) 337
BstNSI RCATGY 1 cut(s) 271
BstSCI CCNGG 1 cut(s) 335
BstSLI GKGCMC 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 109
BtsCI GGATG 1 cut(s) 259
BtsIMutI CAGTG 1 cut(s) 246
Csp6I GTAC 1 cut(s) 305
CviAII CATG 2 cut(s) 98, 268
CviJI RGCY 4 cut(s) 122, 199, 235, 322
CviKI_1 RGCY 4 cut(s) 122, 199, 235, 322
CviQI GTAC 1 cut(s) 305
Eam1104I CTCTTC 2 cut(s) 18, 90
EarI CTCTTC 2 cut(s) 18, 90
Ecl136II GAGCTC 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 201
Eco53kI GAGCTC 1 cut(s) 199
EcoICRI GAGCTC 1 cut(s) 199
EcoRII CCWGG 1 cut(s) 335
EcoT38I GRGCYC 1 cut(s) 201
FaeI CATG 2 cut(s) 101, 271
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FatI CATG 2 cut(s) 97, 267
Fnu4HI GCNGC 1 cut(s) 123
FokI GGATG 1 cut(s) 246
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 1 cut(s) 123
FspBI CTAG 1 cut(s) 170
GluI GCNGC 1 cut(s) 123
GsaI CCCAGC 1 cut(s) 129
Hin1II CATG 2 cut(s) 101, 271
HincII GTYRAC 2 cut(s) 56, 149
HindII GTYRAC 2 cut(s) 56, 149
HphI GGTGA 2 cut(s) 116, 328
Hpy166II GTNNAC 3 cut(s) 56, 149, 244
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 1 cut(s) 33
Hpy8I GTNNAC 3 cut(s) 56, 149, 244
HpyCH4III ACNGT 2 cut(s) 71, 153
HpyCH4V TGCA 1 cut(s) 244
HpyF10VI GCNNNNNNNGC 1 cut(s) 241
Hsp92II CATG 2 cut(s) 101, 271
LpnPI CCDG 5 cut(s) 111, 189, 252, 322, 349
Lsp1109I GCAGC 1 cut(s) 109
LweI GCATC 1 cut(s) 268
MaeI CTAG 1 cut(s) 170
MboII GAAGA 2 cut(s) 35, 77
MhlI GDGCHC 2 cut(s) 201, 246
MluCI AATT 2 cut(s) 38, 348
MnlI CCTC 8 cut(s) 95, 112, 133, 137, 210, 312, 359, 366
MslI CAYNNNNRTG 2 cut(s) 102, 135
MspR9I CCNGG 1 cut(s) 337
MvaI CCWGG 1 cut(s) 337
MwoI GCNNNNNNNGC 1 cut(s) 241
NlaIII CATG 2 cut(s) 101, 271
NspI RCATGY 1 cut(s) 271
PciI ACATGT 1 cut(s) 267
PfoI TCCNGGA 1 cut(s) 335
PkrI GCNGC 1 cut(s) 124
PscI ACATGT 1 cut(s) 267
Psp124BI GAGCTC 1 cut(s) 201
Psp6I CCWGG 1 cut(s) 335
PspFI CCCAGC 1 cut(s) 125
PspGI CCWGG 1 cut(s) 335
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
RseI CAYNNNNRTG 2 cut(s) 102, 135
SacI GAGCTC 1 cut(s) 201
SatI GCNGC 1 cut(s) 123
ScrFI CCNGG 1 cut(s) 337
SduI GDGCHC 2 cut(s) 201, 246
SetI ASST 5 cut(s) 79, 106, 148, 201, 221
SfaNI GCATC 1 cut(s) 268
SmiMI CAYNNNNRTG 2 cut(s) 102, 135
Sse9I AATT 2 cut(s) 38, 348
SsiI CCGC 1 cut(s) 389
SspMI CTAG 1 cut(s) 170
SstI GAGCTC 1 cut(s) 201
StyD4I CCNGG 1 cut(s) 335
TaaI ACNGT 2 cut(s) 71, 153
TaqI TCGA 1 cut(s) 381
TasI AATT 2 cut(s) 38, 348
TatI WGTACW 1 cut(s) 304
TscAI CASTG 1 cut(s) 246
TseI GCWGC 1 cut(s) 122
TspRI CASTG 1 cut(s) 246
VneI GTGCAC 1 cut(s) 242
XapI RAATTY 2 cut(s) 38, 348
XceI RCATGY 1 cut(s) 271
XcmI CCANNNNNNNNNTGG 1 cut(s) 246
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.