Rh7BG445500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0003968
Physical Location & Seq
Forward (+)
51946560 .. 51947550
991 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG445500.1

Sequence Viewer

Length: 405 bp
ATGTACTGGAAATATGAATTTAGGGTTTATGGGACCCTTGAATTTCACAGTGAGGGTTTTACTCTAGAAATACACCATGGGGGGAGCTTTGTTGATACAGGTGGTGGGCAACACAAATACATTGGAGGTGAAGTTCATTGGCTTGAAAAACTTGATCCCGAAAAGACTTCATGGTTGGAGCTCAACACATTTGCTTGGAGACTTGGTTATAGGGAACCACCAGCTCACTACTGGTTCAAGCACCCATATTTATCATGGTACATCCCCGTAAAAGATGACAAAGATGCAGCCAAGATGATTAAATCTATGCCAAAAAATAGAATTGTAGTAATTTATTTTGTTGGTGGAGGTGTTAGGATCGAGGGTAGAGGAAGCTGTGGCAGAGTTAGAGAAGGATGGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

134

Amino Acids

15.73

Weight (kDa)

8.61

Isoelectric Point (pI)

32.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1-like PF26130 18 - 113 1e-18 PB1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 149, 365
AcsI RAATTY 2 cut(s) 17, 41
AfaI GTAC 2 cut(s) 5, 260
AgsI TTSAA 3 cut(s) 41, 146, 238
AloI GAACNNNNNNTCC 2 cut(s) 117, 149
AluBI AGCT 4 cut(s) 87, 181, 224, 375
AluI AGCT 4 cut(s) 87, 181, 224, 375
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 1 cut(s) 193
AlwI GGATC 2 cut(s) 149, 365
ApeKI GCWGC 1 cut(s) 287
ApoI RAATTY 2 cut(s) 17, 41
AspS9I GGNCC 1 cut(s) 33
AsuHPI GGTGA 1 cut(s) 140
AvaII GGWCC 1 cut(s) 33
BanII GRGCYC 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 299
BccI CCATC 1 cut(s) 390
BcoDI GTCTC 1 cut(s) 193
BfaI CTAG 1 cut(s) 65
BisI GCNGC 1 cut(s) 288
BlsI GCNGC 1 cut(s) 289
Bme18I GGWCC 1 cut(s) 33
BmgT120I GGNCC 1 cut(s) 33
BmiI GGNNCC 3 cut(s) 34, 35, 216
BmsI GCATC 1 cut(s) 274
BsaJI CCNNGG 1 cut(s) 76
BsaXI ACNNNNNCTCC 4 cut(s) 117, 147, 190, 220
Bse1I ACTGG 2 cut(s) 11, 236
BseDI CCNNGG 1 cut(s) 76
BseGI GGATG 2 cut(s) 261, 401
BseNI ACTGG 2 cut(s) 11, 236
BseXI GCAGC 1 cut(s) 299
BsiHKAI GWGCWC 1 cut(s) 183
BslFI GGGAC 1 cut(s) 46
BsmAI GTCTC 1 cut(s) 193
BsmFI GGGAC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 2 cut(s) 154, 357
Bsp19I CCATGG 1 cut(s) 76
BspLI GGNNCC 3 cut(s) 34, 35, 216
BspPI GGATC 2 cut(s) 149, 365
BsrI ACTGG 2 cut(s) 11, 236
BssECI CCNNGG 1 cut(s) 76
BssMI GATC 2 cut(s) 154, 357
BssT1I CCWWGG 1 cut(s) 76
Bst4CI ACNGT 1 cut(s) 50
BstDSI CCRYGG 1 cut(s) 76
BstF5I GGATG 2 cut(s) 261, 401
BstKTI GATC 2 cut(s) 157, 360
BstMAI GTCTC 1 cut(s) 193
BstMBI GATC 2 cut(s) 154, 357
BstV1I GCAGC 1 cut(s) 299
BtgI CCRYGG 1 cut(s) 76
BtsCI GGATG 2 cut(s) 261, 401
BtsIMutI CAGTG 1 cut(s) 55
Cfr13I GGNCC 1 cut(s) 33
Csp6I GTAC 2 cut(s) 4, 259
CviAII CATG 3 cut(s) 77, 171, 255
CviJI RGCY 7 cut(s) 87, 142, 181, 224, 290, 375, 400
CviKI_1 RGCY 7 cut(s) 87, 142, 181, 224, 290, 375, 400
CviQI GTAC 2 cut(s) 4, 259
DpnI GATC 2 cut(s) 156, 359
DpnII GATC 2 cut(s) 154, 357
Ecl136II GAGCTC 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 76
Eco24I GRGCYC 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 33
Eco53kI GAGCTC 1 cut(s) 181
EcoICRI GAGCTC 1 cut(s) 181
EcoO109I RGGNCCY 1 cut(s) 33
EcoT14I CCWWGG 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 76
FaeI CATG 3 cut(s) 80, 174, 258
FaiI YATR 9 cut(s) 15, 30, 78, 172, 210, 247, 256, 308, 403
FaqI GGGAC 1 cut(s) 46
FatI CATG 3 cut(s) 76, 170, 254
Fnu4HI GCNGC 1 cut(s) 288
FokI GGATG 1 cut(s) 248
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 288
FspBI CTAG 1 cut(s) 65
GluI GCNGC 1 cut(s) 288
Hin1II CATG 3 cut(s) 80, 174, 258
HphI GGTGA 1 cut(s) 140
Hpy188III TCNNGA 2 cut(s) 65, 158
HpyAV CCTTC 1 cut(s) 386
HpyCH4III ACNGT 1 cut(s) 50
HpyCH4V TGCA 1 cut(s) 287
Hsp92II CATG 3 cut(s) 80, 174, 258
KflI GGGWCCC 1 cut(s) 33
Kzo9I GATC 2 cut(s) 154, 357
LmnI GCTCC 2 cut(s) 84, 178
LpnPI CCDG 3 cut(s) 84, 217, 234
Lsp1109I GCAGC 1 cut(s) 299
LweI GCATC 1 cut(s) 274
MaeI CTAG 1 cut(s) 65
MalI GATC 2 cut(s) 156, 359
MboI GATC 2 cut(s) 154, 357
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 4 cut(s) 17, 41, 321, 330
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 5 cut(s) 46, 119, 341, 355, 362
MseI TTAA 1 cut(s) 300
NcoI CCATGG 1 cut(s) 76
NdeII GATC 2 cut(s) 154, 357
NlaIII CATG 3 cut(s) 80, 174, 258
NlaIV GGNNCC 3 cut(s) 34, 35, 216
PkrI GCNGC 1 cut(s) 289
PpuMI RGGWCCY 1 cut(s) 33
Psp124BI GAGCTC 1 cut(s) 183
Psp5II RGGWCCY 1 cut(s) 33
PspN4I GGNNCC 3 cut(s) 34, 35, 216
PspPI GGNCC 1 cut(s) 33
PspPPI RGGWCCY 1 cut(s) 33
RsaI GTAC 2 cut(s) 5, 260
RsaNI GTAC 2 cut(s) 4, 259
SacI GAGCTC 1 cut(s) 183
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 1 cut(s) 288
Sau3AI GATC 2 cut(s) 154, 357
Sau96I GGNCC 1 cut(s) 33
SduI GDGCHC 1 cut(s) 183
SetI ASST 7 cut(s) 89, 103, 130, 183, 226, 352, 377
SfaNI GCATC 1 cut(s) 274
SinI GGWCC 1 cut(s) 33
Sse9I AATT 4 cut(s) 17, 41, 321, 330
SspMI CTAG 1 cut(s) 65
SstI GAGCTC 1 cut(s) 183
StyI CCWWGG 1 cut(s) 76
TaaI ACNGT 1 cut(s) 50
TaqI TCGA 1 cut(s) 360
TasI AATT 4 cut(s) 17, 41, 321, 330
TatI WGTACW 1 cut(s) 3
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 1 cut(s) 55
TseI GCWGC 1 cut(s) 287
TspDTI ATGAA 3 cut(s) 30, 125, 159
TspRI CASTG 1 cut(s) 55
VpaK11BI GGWCC 1 cut(s) 33
XapI RAATTY 2 cut(s) 17, 41
XbaI TCTAGA 1 cut(s) 64
XcmI CCANNNNNNNNNTGG 2 cut(s) 228, 252
XspI CTAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.