Rroxscaffold_6G00407110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0003968
Physical Location & Seq
Reverse (-)
29686006 .. 29689467
3462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00407110.1

Sequence Viewer

Length: 774 bp
ATGGTGGAAATCAAAGATATGGAAGAGTTTTGGGGAGAATTTCGAATTTCGGGTCAACCCACATATAACAGTCAAGGTTTCACTCTTCAAATACATCATGGAGGTGATTTTGTCAAAGAGGCTGCTGGGCATAAATATGAGGGAGGTCAACTGTGTTGGGCAGAGTTGCTGGACCCAGACAAGATTTCTTGGATAGAGCTCAATACTTTTGCTTGGAGGTTGGGATATAGGAAGCCACCAGTGCACTATTGGTTCAAGCATCCTAACATGTCAGTATTCTTGCCGATCACCAAAGATGAGAATGTACAAAAGATGGTGAGGCTACTGCCAAGTTCCAGGATTATACAAATTTATTATGTTGGTGGAGGGCAGAGGCAAGTCGAACTTGCGGAAATCGAATATAGGGATCCCAAACATGAGGAGATTATACCACATGTAGATTTCATTCCTGAGATTGTCTTAAAGCCAATAAAAGCATATGCAAGGAGTGGATGTAGTATAGAAGAAAATGCAATGGGCAAAAGGAAGGCAGGAGACATAGATGAGGGTGAAGGTTATAATGAAGATGATGAAGACAATGTACATGATAGAGTGAATATAGATGAAGATGGAAGTTTTGATGAGGATTACGTGGATAGTGATTATGAGATATTGCCAGGGGATGAAGGATATGGTGAAGATGGACAAGATGACTTGGAATATGGAGATGGAGAATTACGAAACTTGGAGTTGGTTCCTAGCATACTTGATTGGAGATTTAGATATGCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

257

Amino Acids

29.76

Weight (kDa)

4.54

Isoelectric Point (pI)

45.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1-like PF26130 26 - 119 1.9e-15 PB1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 558
AciI CCGC 1 cut(s) 389
AclWI GGATC 2 cut(s) 401, 414
AcsI RAATTY 3 cut(s) 38, 45, 348
AfaI GTAC 2 cut(s) 306, 582
AflIII ACRYGT 2 cut(s) 267, 433
AgsI TTSAA 2 cut(s) 89, 256
AjnI CCWGG 2 cut(s) 335, 655
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
Alw21I GWGCWC 2 cut(s) 201, 246
Alw26I GTCTC 1 cut(s) 528
Alw44I GTGCAC 1 cut(s) 242
AlwI GGATC 2 cut(s) 401, 414
ApaLI GTGCAC 1 cut(s) 242
ApeKI GCWGC 1 cut(s) 122
ApoI RAATTY 3 cut(s) 38, 45, 348
ArsI GACNNNNNNTTYG 2 cut(s) 37, 69
AspS9I GGNCC 1 cut(s) 172
AsuHPI GGTGA 5 cut(s) 116, 280, 328, 560, 686
AsuII TTCGAA 1 cut(s) 43
AvaII GGWCC 1 cut(s) 172
BaeGI GKGCMC 1 cut(s) 246
BamHI GGATCC 1 cut(s) 406
BanII GRGCYC 1 cut(s) 201
BarI GAAGNNNNNNTAC 2 cut(s) 564, 596
BbsI GAAGAC 1 cut(s) 579
Bbv12I GWGCWC 2 cut(s) 201, 246
BbvI GCAGC 1 cut(s) 109
BccI CCATC 4 cut(s) 307, 602, 674, 701
BciT130I CCWGG 2 cut(s) 337, 657
BcoDI GTCTC 1 cut(s) 528
BfaI CTAG 1 cut(s) 738
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
Bme1390I CCNGG 2 cut(s) 337, 657
Bme18I GGWCC 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 172
BmiI GGNNCC 3 cut(s) 174, 408, 735
BmrFI CCNGG 2 cut(s) 337, 657
BmsI GCATC 1 cut(s) 268
BpiI GAAGAC 1 cut(s) 579
Bpu14I TTCGAA 1 cut(s) 43
BsaAI YACGTR 1 cut(s) 631
BsaJI CCNNGG 1 cut(s) 656
BsaXI ACNNNNNCTCC 2 cut(s) 478, 508
Bse1I ACTGG 1 cut(s) 239
Bse3DI GCAATG 1 cut(s) 519
BseBI CCWGG 2 cut(s) 337, 657
BseDI CCNNGG 1 cut(s) 656
BseGI GGATG 3 cut(s) 259, 497, 667
BseMI GCAATG 1 cut(s) 519
BseMII CTCAG 1 cut(s) 441
BseNI ACTGG 1 cut(s) 239
BseRI GAGGAG 1 cut(s) 434
BseSI GKGCMC 1 cut(s) 246
BseXI GCAGC 1 cut(s) 109
BseYI CCCAGC 1 cut(s) 125
BsiHKAI GWGCWC 2 cut(s) 201, 246
BsmAI GTCTC 1 cut(s) 528
Bsp119I TTCGAA 1 cut(s) 43
Bsp1286I GDGCHC 2 cut(s) 201, 246
Bsp1407I TGTACA 2 cut(s) 304, 580
Bsp143I GATC 2 cut(s) 285, 406
BspACI CCGC 1 cut(s) 389
BspCNI CTCAG 1 cut(s) 442
BspLI GGNNCC 3 cut(s) 174, 408, 735
BspPI GGATC 2 cut(s) 401, 414
BspT104I TTCGAA 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 519
BsrGI TGTACA 2 cut(s) 304, 580
BsrI ACTGG 1 cut(s) 239
BssECI CCNNGG 1 cut(s) 656
BssMI GATC 2 cut(s) 285, 406
Bst2UI CCWGG 2 cut(s) 337, 657
Bst4CI ACNGT 2 cut(s) 71, 153
Bst6I CTCTTC 2 cut(s) 18, 90
BstAUI TGTACA 2 cut(s) 304, 580
BstBAI YACGTR 1 cut(s) 631
BstBI TTCGAA 1 cut(s) 43
BstDEI CTNAG 1 cut(s) 450
BstF5I GGATG 3 cut(s) 259, 497, 667
BstKTI GATC 2 cut(s) 288, 409
BstMAI GTCTC 1 cut(s) 528
BstMBI GATC 2 cut(s) 285, 406
BstMWI GCNNNNNNNGC 1 cut(s) 241
BstNI CCWGG 2 cut(s) 337, 657
BstNSI RCATGY 2 cut(s) 271, 437
BstSCI CCNGG 2 cut(s) 335, 655
BstSLI GKGCMC 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 109
BstV2I GAAGAC 1 cut(s) 579
BstX2I RGATCY 1 cut(s) 406
BstYI RGATCY 1 cut(s) 406
BtsCI GGATG 3 cut(s) 259, 497, 667
BtsIMutI CAGTG 1 cut(s) 246
Cfr13I GGNCC 1 cut(s) 172
Csp6I GTAC 2 cut(s) 305, 581
CviAII CATG 5 cut(s) 98, 268, 416, 434, 584
CviJI RGCY 5 cut(s) 122, 199, 235, 322, 466
CviKI_1 RGCY 5 cut(s) 122, 199, 235, 322, 466
CviQI GTAC 2 cut(s) 305, 581
DdeI CTNAG 1 cut(s) 450
DpnI GATC 2 cut(s) 287, 408
DpnII GATC 2 cut(s) 285, 406
Eam1104I CTCTTC 2 cut(s) 18, 90
EarI CTCTTC 2 cut(s) 18, 90
Ecl136II GAGCTC 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 172
Eco53kI GAGCTC 1 cut(s) 199
EcoICRI GAGCTC 1 cut(s) 199
EcoRII CCWGG 2 cut(s) 335, 655
EcoT38I GRGCYC 1 cut(s) 201
FaeI CATG 5 cut(s) 101, 271, 419, 437, 587
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FatI CATG 5 cut(s) 97, 267, 415, 433, 583
FauNDI CATATG 1 cut(s) 478
Fnu4HI GCNGC 1 cut(s) 123
FokI GGATG 3 cut(s) 246, 504, 674
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 1 cut(s) 123
FspBI CTAG 1 cut(s) 738
GluI GCNGC 1 cut(s) 123
GsaI CCCAGC 1 cut(s) 129
Hin1II CATG 5 cut(s) 101, 271, 419, 437, 587
HincII GTYRAC 2 cut(s) 56, 149
HindII GTYRAC 2 cut(s) 56, 149
HphI GGTGA 5 cut(s) 116, 280, 328, 560, 686
Hpy166II GTNNAC 3 cut(s) 56, 149, 244
Hpy188III TCNNGA 1 cut(s) 449
Hpy8I GTNNAC 3 cut(s) 56, 149, 244
HpyAV CCTTC 3 cut(s) 520, 545, 659
HpyCH4III ACNGT 2 cut(s) 71, 153
HpyCH4IV ACGT 1 cut(s) 630
HpyCH4V TGCA 4 cut(s) 244, 482, 512, 767
HpyF10VI GCNNNNNNNGC 1 cut(s) 241
HpyF3I CTNAG 1 cut(s) 450
HpySE526I ACGT 1 cut(s) 630
Hsp92II CATG 5 cut(s) 101, 271, 419, 437, 587
Kzo9I GATC 2 cut(s) 285, 406
Lsp1109I GCAGC 1 cut(s) 109
LweI GCATC 1 cut(s) 268
MaeI CTAG 1 cut(s) 738
MaeII ACGT 1 cut(s) 630
MalI GATC 2 cut(s) 287, 408
MboI GATC 2 cut(s) 285, 406
MboII GAAGA 7 cut(s) 35, 77, 515, 575, 584, 617, 689
MflI RGATCY 1 cut(s) 406
MhlI GDGCHC 2 cut(s) 201, 246
MluCI AATT 4 cut(s) 38, 45, 348, 713
MseI TTAA 1 cut(s) 461
MslI CAYNNNNRTG 2 cut(s) 102, 135
MspR9I CCNGG 2 cut(s) 337, 657
MvaI CCWGG 2 cut(s) 337, 657
MwoI GCNNNNNNNGC 1 cut(s) 241
NdeI CATATG 1 cut(s) 478
NdeII GATC 2 cut(s) 285, 406
NlaIII CATG 5 cut(s) 101, 271, 419, 437, 587
NlaIV GGNNCC 3 cut(s) 174, 408, 735
NspI RCATGY 2 cut(s) 271, 437
NspV TTCGAA 1 cut(s) 43
PciI ACATGT 2 cut(s) 267, 433
PfoI TCCNGGA 1 cut(s) 335
PkrI GCNGC 1 cut(s) 124
Ppu21I YACGTR 1 cut(s) 631
PscI ACATGT 2 cut(s) 267, 433
PsiI TTATAA 1 cut(s) 558
Psp124BI GAGCTC 1 cut(s) 201
Psp6I CCWGG 2 cut(s) 335, 655
PspFI CCCAGC 1 cut(s) 125
PspGI CCWGG 2 cut(s) 335, 655
PspN4I GGNNCC 3 cut(s) 174, 408, 735
PspPI GGNCC 1 cut(s) 172
PsuI RGATCY 1 cut(s) 406
RsaI GTAC 2 cut(s) 306, 582
RsaNI GTAC 2 cut(s) 305, 581
RseI CAYNNNNRTG 2 cut(s) 102, 135
SacI GAGCTC 1 cut(s) 201
SaqAI TTAA 1 cut(s) 461
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 2 cut(s) 285, 406
Sau96I GGNCC 1 cut(s) 172
ScrFI CCNGG 2 cut(s) 337, 657
SduI GDGCHC 2 cut(s) 201, 246
SetI ASST 7 cut(s) 79, 106, 148, 201, 221, 556, 633
SfaNI GCATC 1 cut(s) 268
SfuI TTCGAA 1 cut(s) 43
SinI GGWCC 1 cut(s) 172
SmiMI CAYNNNNRTG 2 cut(s) 102, 135
Sse9I AATT 4 cut(s) 38, 45, 348, 713
SsiI CCGC 1 cut(s) 389
SspMI CTAG 1 cut(s) 738
SstI GAGCTC 1 cut(s) 201
StyD4I CCNGG 2 cut(s) 335, 655
TaaI ACNGT 2 cut(s) 71, 153
TaiI ACGT 1 cut(s) 633
TaqI TCGA 3 cut(s) 43, 381, 396
TasI AATT 4 cut(s) 38, 45, 348, 713
TatI WGTACW 2 cut(s) 304, 580
Tru1I TTAA 1 cut(s) 461
Tru9I TTAA 1 cut(s) 461
TscAI CASTG 1 cut(s) 246
TseI GCWGC 1 cut(s) 122
TspDTI ATGAA 5 cut(s) 433, 576, 585, 618, 678
TspRI CASTG 1 cut(s) 246
VneI GTGCAC 1 cut(s) 242
VpaK11BI GGWCC 1 cut(s) 172
XapI RAATTY 3 cut(s) 38, 45, 348
XceI RCATGY 2 cut(s) 271, 437
XcmI CCANNNNNNNNNTGG 1 cut(s) 246
XspI CTAG 1 cut(s) 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.