Rh5AG500800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0003968
Physical Location & Seq
Forward (+)
84776375 .. 84776902
528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG500800.1

Sequence Viewer

Length: 528 bp
ATGTCAGTATTCTTGCCGATCACCAAAGATGAGAATATACAAAAGATGGTGAGGCTACTGCCAAGTTCCAGGATTATACAAATTTATTATGTTGGTGGAGGGCAGAGGCAAGTCGAACTTGCGGAAATGGAGTATAGGGATCCCAAACATGAGGAGATTATACCACATGTAGATTTCATTCATGAGATTGTCTTAAAGCCAATAAAAGCATATGCAAGGAGTGGATGCATTATAGAAGAAAATGCAATGGGTAAAAAGAAGGCAGGAGACATAGATGAGGGTGAAGGTTATAATGAAGATGATGATGACAATGTACATGATAGAGTGAATATAGATGAAGATGGAAGTTTTGATGAGGATTACGTGGATAGTGATTATGAGATATTGCCAGGGGATGAAGGATATGGTGAAGATGGACAAGATGACTTGGAATATGAGGAGAATGTCGATAACCGTGATGTGTATGATGAGTATGCTGACATGGGATTCAATGGTGAAATTTCTGACCATAGCCATGATAGTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

20.06

Weight (kDa)

4.13

Isoelectric Point (pI)

46.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 291
AciI CCGC 1 cut(s) 122
AclWI GGATC 2 cut(s) 134, 147
AcsI RAATTY 2 cut(s) 81, 498
AfaI GTAC 1 cut(s) 315
AflIII ACRYGT 1 cut(s) 166
AgsI TTSAA 1 cut(s) 490
AjnI CCWGG 2 cut(s) 68, 388
Alw26I GTCTC 1 cut(s) 261
AlwI GGATC 2 cut(s) 134, 147
ApoI RAATTY 2 cut(s) 81, 498
AsuHPI GGTGA 5 cut(s) 13, 61, 293, 419, 506
BamHI GGATCC 1 cut(s) 139
BccI CCATC 3 cut(s) 40, 335, 407
BciT130I CCWGG 2 cut(s) 70, 390
BcoDI GTCTC 1 cut(s) 261
Bme1390I CCNGG 2 cut(s) 70, 390
BmiI GGNNCC 1 cut(s) 141
BmrFI CCNGG 2 cut(s) 70, 390
BmsI GCATC 1 cut(s) 215
BsaAI YACGTR 1 cut(s) 364
BsaJI CCNNGG 1 cut(s) 389
Bse3DI GCAATG 1 cut(s) 252
BseBI CCWGG 2 cut(s) 70, 390
BseDI CCNNGG 1 cut(s) 389
BseGI GGATG 2 cut(s) 230, 400
BseMI GCAATG 1 cut(s) 252
BseRI GAGGAG 2 cut(s) 167, 452
BsmAI GTCTC 1 cut(s) 261
Bsp1407I TGTACA 1 cut(s) 313
Bsp143I GATC 2 cut(s) 18, 139
BspACI CCGC 1 cut(s) 122
BspHI TCATGA 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 141
BspPI GGATC 2 cut(s) 134, 147
BsrDI GCAATG 1 cut(s) 252
BsrGI TGTACA 1 cut(s) 313
BssECI CCNNGG 1 cut(s) 389
BssMI GATC 2 cut(s) 18, 139
Bst2UI CCWGG 2 cut(s) 70, 390
Bst4CI ACNGT 1 cut(s) 455
BstAUI TGTACA 1 cut(s) 313
BstBAI YACGTR 1 cut(s) 364
BstF5I GGATG 2 cut(s) 230, 400
BstKTI GATC 2 cut(s) 21, 142
BstMAI GTCTC 1 cut(s) 261
BstMBI GATC 2 cut(s) 18, 139
BstNI CCWGG 2 cut(s) 70, 390
BstNSI RCATGY 1 cut(s) 170
BstSCI CCNGG 2 cut(s) 68, 388
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BtsCI GGATG 2 cut(s) 230, 400
CciI TCATGA 1 cut(s) 181
Csp6I GTAC 1 cut(s) 314
CviAII CATG 6 cut(s) 149, 167, 182, 317, 481, 515
CviJI RGCY 3 cut(s) 55, 199, 513
CviKI_1 RGCY 3 cut(s) 55, 199, 513
CviQI GTAC 1 cut(s) 314
DpnI GATC 2 cut(s) 20, 141
DpnII GATC 2 cut(s) 18, 139
EcoRII CCWGG 2 cut(s) 68, 388
EcoT22I ATGCAT 1 cut(s) 230
FaeI CATG 6 cut(s) 152, 170, 185, 320, 484, 518
FalI AAGNNNNNCTT 2 cut(s) 102, 134
FatI CATG 6 cut(s) 148, 166, 181, 316, 480, 514
FauNDI CATATG 1 cut(s) 211
FokI GGATG 2 cut(s) 237, 407
Hin1II CATG 6 cut(s) 152, 170, 185, 320, 484, 518
HinfI GANTC 1 cut(s) 486
HphI GGTGA 5 cut(s) 13, 61, 293, 419, 506
Hpy188I TCNGA 1 cut(s) 505
Hpy188III TCNNGA 1 cut(s) 182
HpyAV CCTTC 3 cut(s) 253, 278, 392
HpyCH4III ACNGT 1 cut(s) 455
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 3 cut(s) 215, 228, 245
HpySE526I ACGT 1 cut(s) 363
Hsp92II CATG 6 cut(s) 152, 170, 185, 320, 484, 518
Kzo9I GATC 2 cut(s) 18, 139
LpnPI CCDG 5 cut(s) 55, 82, 249, 375, 402
LweI GCATC 1 cut(s) 215
MaeII ACGT 1 cut(s) 363
MalI GATC 2 cut(s) 20, 141
MboI GATC 2 cut(s) 18, 139
MboII GAAGA 4 cut(s) 248, 308, 350, 422
MflI RGATCY 1 cut(s) 139
MluCI AATT 2 cut(s) 81, 498
MnlI CCTC 7 cut(s) 45, 92, 99, 145, 271, 349, 430
Mph1103I ATGCAT 1 cut(s) 230
MseI TTAA 1 cut(s) 194
MslI CAYNNNNRTG 2 cut(s) 513, 519
MspR9I CCNGG 2 cut(s) 70, 390
MvaI CCWGG 2 cut(s) 70, 390
NdeI CATATG 1 cut(s) 211
NdeII GATC 2 cut(s) 18, 139
NlaIII CATG 6 cut(s) 152, 170, 185, 320, 484, 518
NlaIV GGNNCC 1 cut(s) 141
NsiI ATGCAT 1 cut(s) 230
NspI RCATGY 1 cut(s) 170
PagI TCATGA 1 cut(s) 181
PciI ACATGT 1 cut(s) 166
PfeI GAWTC 1 cut(s) 486
PfoI TCCNGGA 1 cut(s) 68
Ppu21I YACGTR 1 cut(s) 364
PscI ACATGT 1 cut(s) 166
PsiI TTATAA 1 cut(s) 291
Psp6I CCWGG 2 cut(s) 68, 388
PspGI CCWGG 2 cut(s) 68, 388
PspN4I GGNNCC 1 cut(s) 141
PsuI RGATCY 1 cut(s) 139
RsaI GTAC 1 cut(s) 315
RsaNI GTAC 1 cut(s) 314
RseI CAYNNNNRTG 2 cut(s) 513, 519
SaqAI TTAA 1 cut(s) 194
Sau3AI GATC 2 cut(s) 18, 139
ScrFI CCNGG 2 cut(s) 70, 390
SetI ASST 2 cut(s) 289, 366
SfaNI GCATC 1 cut(s) 215
SmiMI CAYNNNNRTG 2 cut(s) 513, 519
Sse9I AATT 2 cut(s) 81, 498
SsiI CCGC 1 cut(s) 122
StyD4I CCNGG 2 cut(s) 68, 388
TaaI ACNGT 1 cut(s) 455
TaiI ACGT 1 cut(s) 366
TaqI TCGA 2 cut(s) 114, 447
TasI AATT 2 cut(s) 81, 498
TatI WGTACW 1 cut(s) 313
TfiI GAWTC 1 cut(s) 486
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TspDTI ATGAA 5 cut(s) 166, 170, 309, 351, 411
XapI RAATTY 2 cut(s) 81, 498
XceI RCATGY 1 cut(s) 170
Zsp2I ATGCAT 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.