Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003968

Physical Location & Seq

Genomic Coordinates Forward (+)

8373554 .. 8382587

Gene Structure 9034 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027093

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGTTAAGCCATGGATAAAGAAGAACAGAGTTGGAGTAACGGGAAGAGGGAGGGAGGGAGGAAGTGAAGACAGAGAGCAGCACAAAAAATGTGGAAGGATTGAGAAGTTGGCTGTGATCGGTCCCGCATTGTGCAGATACCCCTATCGCGCAAGTGGCATTACTATAGTGGGATTTCAAAGAAATGGACTTCATTTTTTAAGCTTCTCATTACCCGCTGGAGAATCTGTCAAGGTTTCACTCTTCAAATACATCATGGAGCCATTAAAAGCATATGCAAGGAGTGAATGTAGTATAGAAGAAAATGCAATTGGTAAAAGGAAGGCAGGAGACATAGATGAGGGTGAAGGTTATAATGAAGATGATGATGACAATGTACATGATAGAGTGAATATAGATGAAGATGGAAGTGATTACGTGGATAGTGATTATGAGATATTGCCAGGGGATGAAGGATATGAGCCACCAGCGCCAGAGCCAACAAAAGTTTGTGGAAATACAACTAGGCTGTCAAGGAGTAAGTATGTGACTATCACCTGCAGAGTTTGTAAACAACCTAATCACAACAAAAGAACATGCCCTGTTGAAAAAGCTAGAAAGAAAAAAGAGGAAGAAGAATCAAGGGCGCGGGGCAATGGAGACAATGAAAATGGAGATCACGACAATGGAGAAAGTGGTAATCGAGACGATACCAATGGAAATGAAGGCAGGGGTCAGCAGGTTGCCAAAATAGCACCAAGGAGGGGTCAGACCTCTAAGGCACCTAGTCATGCCATCCAAACATCACCGAATCCTTCATCAAGCCAACCATCACCTGCAACTTTCTCACAACAACCAGTGTTACCAACCAGTATTTCACAACCCACTCCAGTTAAGGCGAAACCAAAAATGCCAAAGCAGCCACCTAAAAAGCCTGTGTGGAAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

ATP-synt_A

Protein Analysis

310

Amino Acids

34.11

Weight (kDa)

8.81

Isoelectric Point (pI)

53.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003968)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0085051 RchiOBHm_Chr5g0037941
rosa_laevigata	RLG00000017994 RLG00000019454 RLG00000027093 RLG00000029383
rosa_multiflora	Rmu_sc0000509.1_g000001 Rmu_sc0003573.1_g000043 Rmu_sc0015807.1_g000003
rosa_roxburghii	Rroxscaffold_2G00129780 Rroxscaffold_6G00407110
rosa_rugosa	Rorug07G0294600 Rorug07G0319600
rosa_samantha	Rh1DG445800 Rh2AG168400 Rh2AG243600 Rh2AG243700 Rh2BG175400 Rh2BG201700 Rh2CG249000 Rh2DG173900 Rh2DG252100 Rh2DG252200 Rh3DG150400 Rh4AG146900 Rh4CG153500 Rh5AG355600 Rh5AG500800 Rh5AG500900 Rh5CG330400 Rh7BG445500 Rh7BG445600 Rh7BG445700
rosa_wichuraiana	Rw0G005140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	354
AarI	CACCTGC	2 cut(s)	545, 823
Acc36I	ACCTGC	3 cut(s)	545, 709, 823
AccB1I	GGYRCC	1 cut(s)	760
AccII	CGCG	2 cut(s)	150, 628
AciI	CCGC	3 cut(s)	126, 216, 628
AfaI	GTAC	1 cut(s)	378
AfiI	CCNNNNNNNGG	1 cut(s)	743
AgsI	TTSAA	3 cut(s)	179, 247, 587
AjnI	CCWGG	1 cut(s)	442
AjuI	GAANNNNNNNTTGG	4 cut(s)	294, 326, 838, 870
AluBI	AGCT	2 cut(s)	204, 593
AluI	AGCT	2 cut(s)	204, 593
Alw26I	GTCTC	3 cut(s)	324, 633, 678
ApeKI	GCWGC	2 cut(s)	79, 898
AspLEI	GCGC	3 cut(s)	152, 472, 628
AspS9I	GGNCC	1 cut(s)	122
AsuHPI	GGTGA	4 cut(s)	356, 526, 777, 804
AvaII	GGWCC	1 cut(s)	122
BanI	GGYRCC	1 cut(s)	760
BbsI	GAAGAC	1 cut(s)	75
BbvI	GCAGC	2 cut(s)	91, 910
BccI	CCATC	3 cut(s)	398, 782, 817
BciT130I	CCWGG	1 cut(s)	444
BcoDI	GTCTC	3 cut(s)	324, 633, 678
BfaI	CTAG	3 cut(s)	504, 594, 765
BfmI	CTRYAG	2 cut(s)	165, 538
BfoI	RGCGCY	1 cut(s)	473
BfuAI	ACCTGC	3 cut(s)	545, 709, 823
BisI	GCNGC	2 cut(s)	80, 899
BlsI	GCNGC	2 cut(s)	81, 900
Bme1390I	CCNGG	1 cut(s)	444
Bme18I	GGWCC	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	122
BmiI	GGNNCC	3 cut(s)	124, 261, 762
BmrFI	CCNGG	1 cut(s)	444
BpiI	GAAGAC	1 cut(s)	75
BpmI	CTGGAG	2 cut(s)	240, 852
BsaAI	YACGTR	1 cut(s)	418
BsaJI	CCNNGG	3 cut(s)	11, 443, 737
BsaXI	ACNNNNNCTCC	4 cut(s)	213, 243, 274, 304
Bsc4I	CCNNNNNNNGG	1 cut(s)	743
Bse1I	ACTGG	3 cut(s)	836, 849, 869
Bse3DI	GCAATG	1 cut(s)	640
BseBI	CCWGG	1 cut(s)	444
BseDI	CCNNGG	3 cut(s)	11, 443, 737
BseGI	GGATG	2 cut(s)	454, 774
BseLI	CCNNNNNNNGG	1 cut(s)	743
BseMI	GCAATG	1 cut(s)	640
BseNI	ACTGG	3 cut(s)	836, 849, 869
BseXI	GCAGC	2 cut(s)	91, 910
BsgI	GTGCAG	1 cut(s)	154
Bsh1236I	CGCG	2 cut(s)	150, 628
BshNI	GGYRCC	1 cut(s)	760
BslFI	GGGAC	1 cut(s)	108
BslI	CCNNNNNNNGG	1 cut(s)	743
BsmAI	GTCTC	3 cut(s)	324, 633, 678
BsmBI	CGTCTC	1 cut(s)	678
BsmFI	GGGAC	1 cut(s)	108
Bsp1407I	TGTACA	1 cut(s)	376
Bsp143I	GATC	2 cut(s)	117, 655
Bsp19I	CCATGG	1 cut(s)	11
BspACI	CCGC	3 cut(s)	126, 216, 628
BspFNI	CGCG	2 cut(s)	150, 628
BspLI	GGNNCC	3 cut(s)	124, 261, 762
BspMAI	CTGCAG	1 cut(s)	542
BspMI	ACCTGC	3 cut(s)	545, 709, 823
BspT107I	GGYRCC	1 cut(s)	760
BsrDI	GCAATG	1 cut(s)	640
BsrGI	TGTACA	1 cut(s)	376
BsrI	ACTGG	3 cut(s)	836, 849, 869
BssECI	CCNNGG	3 cut(s)	11, 443, 737
BssMI	GATC	2 cut(s)	117, 655
BssT1I	CCWWGG	2 cut(s)	11, 737
Bst2UI	CCWGG	1 cut(s)	444
Bst6I	CTCTTC	2 cut(s)	40, 248
BstAUI	TGTACA	1 cut(s)	376
BstBAI	YACGTR	1 cut(s)	418
BstDEI	CTNAG	1 cut(s)	756
BstDSI	CCRYGG	1 cut(s)	11
BstF5I	GGATG	2 cut(s)	454, 774
BstFNI	CGCG	2 cut(s)	150, 628
BstH2I	RGCGCY	1 cut(s)	473
BstHHI	GCGC	3 cut(s)	152, 472, 628
BstKTI	GATC	2 cut(s)	120, 658
BstMAI	GTCTC	3 cut(s)	324, 633, 678
BstMBI	GATC	2 cut(s)	117, 655
BstMWI	GCNNNNNNNGC	4 cut(s)	156, 469, 731, 898
BstNI	CCWGG	1 cut(s)	444
BstNSI	RCATGY	1 cut(s)	579
BstSCI	CCNGG	1 cut(s)	442
BstSFI	CTRYAG	2 cut(s)	165, 538
BstUI	CGCG	2 cut(s)	150, 628
BstV1I	GCAGC	2 cut(s)	91, 910
BstV2I	GAAGAC	1 cut(s)	75
BtgI	CCRYGG	1 cut(s)	11
BtsCI	GGATG	2 cut(s)	454, 774
BtsIMutI	CAGTG	1 cut(s)	843
BveI	ACCTGC	3 cut(s)	545, 709, 823
CfoI	GCGC	3 cut(s)	152, 472, 628
Cfr13I	GGNCC	1 cut(s)	122
Csp6I	GTAC	1 cut(s)	377
CspCI	CAANNNNNGTGG	2 cut(s)	73, 108
CviAII	CATG	5 cut(s)	12, 256, 380, 576, 770
CviQI	GTAC	1 cut(s)	377
DdeI	CTNAG	1 cut(s)	756
DpnI	GATC	2 cut(s)	119, 657
DpnII	GATC	2 cut(s)	117, 655
Eam1104I	CTCTTC	2 cut(s)	40, 248
EarI	CTCTTC	2 cut(s)	40, 248
Eco130I	CCWWGG	2 cut(s)	11, 737
Eco47I	GGWCC	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	442
EcoT14I	CCWWGG	2 cut(s)	11, 737
ErhI	CCWWGG	2 cut(s)	11, 737
Esp3I	CGTCTC	1 cut(s)	678
FaeI	CATG	5 cut(s)	15, 259, 383, 579, 773
FaqI	GGGAC	1 cut(s)	108
FatI	CATG	5 cut(s)	11, 255, 379, 575, 769
FauI	CCCGC	3 cut(s)	133, 223, 621
FauNDI	CATATG	1 cut(s)	274
Fnu4HI	GCNGC	2 cut(s)	80, 899
FokI	GGATG	2 cut(s)	461, 761
Fsp4HI	GCNGC	2 cut(s)	80, 899
FspBI	CTAG	3 cut(s)	504, 594, 765
GlaI	GCGC	3 cut(s)	151, 471, 627
GluI	GCNGC	2 cut(s)	80, 899
GsuI	CTGGAG	2 cut(s)	240, 852
HaeII	RGCGCY	1 cut(s)	473
HhaI	GCGC	3 cut(s)	152, 472, 628
Hin1II	CATG	5 cut(s)	15, 259, 383, 579, 773
Hin6I	GCGC	3 cut(s)	150, 470, 626
HinP1I	GCGC	3 cut(s)	150, 470, 626
HindIII	AAGCTT	1 cut(s)	202
HinfI	GANTC	3 cut(s)	224, 617, 790
HphI	GGTGA	4 cut(s)	356, 526, 777, 804
Hpy166II	GTNNAC	1 cut(s)	551
Hpy188I	TCNGA	1 cut(s)	750
Hpy188III	TCNNGA	2 cut(s)	659, 683
Hpy8I	GTNNAC	1 cut(s)	551
HpyAV	CCTTC	6 cut(s)	90, 316, 341, 446, 698, 804
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	5 cut(s)	135, 278, 308, 540, 818
HpyF10VI	GCNNNNNNNGC	4 cut(s)	156, 469, 731, 898
HpyF3I	CTNAG	1 cut(s)	756
HpySE526I	ACGT	1 cut(s)	417
Hsp92II	CATG	5 cut(s)	15, 259, 383, 579, 773
HspAI	GCGC	3 cut(s)	150, 470, 626
Kzo9I	GATC	2 cut(s)	117, 655
LmnI	GCTCC	1 cut(s)	259
Lsp1109I	GCAGC	2 cut(s)	91, 910
MaeI	CTAG	3 cut(s)	504, 594, 765
MaeII	ACGT	1 cut(s)	417
MaeIII	GTNAC	3 cut(s)	37, 526, 840
MalI	GATC	2 cut(s)	119, 657
MboI	GATC	2 cut(s)	117, 655
MboII	GAAGA	9 cut(s)	34, 57, 80, 235, 311, 371, 413, 623, 626
MfeI	CAATTG	1 cut(s)	309
MluCI	AATT	1 cut(s)	309
MmeI	TCCRAC	1 cut(s)	13
MnlI	CCTC	8 cut(s)	41, 45, 49, 53, 334, 601, 735, 763
MseI	TTAA	4 cut(s)	6, 200, 266, 873
MslI	CAYNNNNRTG	1 cut(s)	663
MspA1I	CMGCKG	1 cut(s)	218
MspR9I	CCNGG	1 cut(s)	444
MunI	CAATTG	1 cut(s)	309
MvaI	CCWGG	1 cut(s)	444
MvnI	CGCG	2 cut(s)	150, 628
MwoI	GCNNNNNNNGC	4 cut(s)	156, 469, 731, 898
NcoI	CCATGG	1 cut(s)	11
NdeI	CATATG	1 cut(s)	274
NdeII	GATC	2 cut(s)	117, 655
NlaIII	CATG	5 cut(s)	15, 259, 383, 579, 773
NlaIV	GGNNCC	3 cut(s)	124, 261, 762
NmuCI	GTSAC	1 cut(s)	526
NspI	RCATGY	1 cut(s)	579
PaqCI	CACCTGC	2 cut(s)	545, 823
PfeI	GAWTC	3 cut(s)	224, 617, 790
PkrI	GCNGC	2 cut(s)	81, 900
Ppu21I	YACGTR	1 cut(s)	418
PsiI	TTATAA	1 cut(s)	354
Psp6I	CCWGG	1 cut(s)	442
PspGI	CCWGG	1 cut(s)	442
PspN4I	GGNNCC	3 cut(s)	124, 261, 762
PspPI	GGNCC	1 cut(s)	122
PstI	CTGCAG	1 cut(s)	542
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
RseI	CAYNNNNRTG	1 cut(s)	663
SaqAI	TTAA	4 cut(s)	6, 200, 266, 873
SatI	GCNGC	2 cut(s)	80, 899
Sau3AI	GATC	2 cut(s)	117, 655
Sau96I	GGNCC	1 cut(s)	122
ScrFI	CCNGG	1 cut(s)	444
SfcI	CTRYAG	2 cut(s)	165, 538
SinI	GGWCC	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	663
Sse9I	AATT	1 cut(s)	309
SsiI	CCGC	3 cut(s)	126, 216, 628
SspMI	CTAG	3 cut(s)	504, 594, 765
StyD4I	CCNGG	1 cut(s)	442
StyI	CCWWGG	2 cut(s)	11, 737
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	1 cut(s)	682
TaqII	GACCGA	1 cut(s)	110
TasI	AATT	1 cut(s)	309
TatI	WGTACW	1 cut(s)	376
TfiI	GAWTC	3 cut(s)	224, 617, 790
Tru1I	TTAA	4 cut(s)	6, 200, 266, 873
Tru9I	TTAA	4 cut(s)	6, 200, 266, 873
TscAI	CASTG	1 cut(s)	843
TseFI	GTSAC	1 cut(s)	526
TseI	GCWGC	2 cut(s)	79, 898
Tsp45I	GTSAC	1 cut(s)	526
TspDTI	ATGAA	7 cut(s)	182, 372, 414, 465, 660, 717, 786
TspRI	CASTG	1 cut(s)	843
VpaK11BI	GGWCC	1 cut(s)	122
XceI	RCATGY	1 cut(s)	579
XspI	CTAG	3 cut(s)	504, 594, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.