Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00202

Orthogroup ID

OG0003968

Physical Location & Seq

Genomic Coordinates Reverse (-)

16937 .. 22222

Gene Structure 5286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G005140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGGGTAAAAGGAAGGCAGGAGACATAGATGAGGGTGAAGGTTATAATGAAGATGATGATGACAATGTACATGATAGAGTGAATATAGATGAAGATGGAAGTTTTGATGAGGATTACGTGGATAGTGATTGTGAGATATTGTCAGGGGATGAAGGATATGGTGAAGATGGACAAGATGACTTGGAATATGAGGAGAATGTTGATAACCGTGATGTGTATGATGAGTATGCTGACATGGGATTCAATGGTGAAATTTCTGATCATAGCCATGATAGTGAAGAATTGAGGGATTTGGTGGAAGAAACTGAAAGTGATGATGAAGCAGGTGAGTCAACAAGTAAACCAAAGAAAAATAGGAGACAAAAACTTATGAGTGGCAGAACTTGGGTTCCTGAGAGAGACATGAAGGATCCACAGTTTGAAGTTAACCAACAGTTTGCCAACGCAGCACAATTCAAGGCTGCTATCAAGAAGTATGCTGTGAAAACTGGATATAATCTATTTTTTAAGAAGAATGCAGGTGTTAAAGTAGAGGTTGCATGCGGAAAGAAGCACAAGGGTAAAAGAGAGACTTGGCCTTGTCAATTTTGGATCTCTGCTAGTGTAATCAAGGCTCTCACAAGTCACAATCGGTCTCTTGCGACTTTGTCCCAGCCTCCCAAGTACACCAAGGTGGTCTTGATTGGCGACTCCGGCGTCGGCAAGTTCAATCTCCTCTCCAGTACCGTCAAAAATCCCCTTGGTGCTAAGAAAACTGGGAAAACTGGGGGACTTGGTGCTTGCAAACTCACTACAAAGCCAAATGAAAGTCTGTATGATCAGAAGCCTGAAGAACCAGTTATCCCAGTAGTTTCCTCAACCAAAAGCACTCCACCAGCTGTCACACCCCTTTCTGCACCCAAGTCATCGAGTTTCTTTGCGGATTTCGGAATGGATAGCAGTTATCCCAAGAGAACGAGTTCAAACTCCTCAAAGGTGCAAGCGCGGGGCAATGGGGACAATGGAAATGGAGATTACGACAATGGAGAAAGTGGCAATCAAGACACTACCAATGGAAATGAAGGCAGGGGTCCGCAGGTTGCCAAAATAGCACCAAGGAGGGGTCAGACCTCCAAGGCACCTAGTCATGCCATCCAAATATCACCGAATCCTTCATCAAGCCAACCATCACCTGCAACTTTCTCTCAACAACCAGTGTTACCAACCAGTGTTTCACAATCTACTCCAGTTAAGGCGAAACCCAAAATGCCAAAGCAGCCACCTAAAAAGCCTATGTGGAAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0007275 GO:0008150 GO:0009555 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0010033 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap

Protein Analysis

428

Amino Acids

46.73

Weight (kDa)

5.51

Isoelectric Point (pI)

44.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003968)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0085051 RchiOBHm_Chr5g0037941
rosa_laevigata	RLG00000017994 RLG00000019454 RLG00000027093 RLG00000029383
rosa_multiflora	Rmu_sc0000509.1_g000001 Rmu_sc0003573.1_g000043 Rmu_sc0015807.1_g000003
rosa_roxburghii	Rroxscaffold_2G00129780 Rroxscaffold_6G00407110
rosa_rugosa	Rorug07G0294600 Rorug07G0319600
rosa_samantha	Rh1DG445800 Rh2AG168400 Rh2AG243600 Rh2AG243700 Rh2BG175400 Rh2BG201700 Rh2CG249000 Rh2DG173900 Rh2DG252100 Rh2DG252200 Rh3DG150400 Rh4AG146900 Rh4CG153500 Rh5AG355600 Rh5AG500800 Rh5AG500900 Rh5CG330400 Rh7BG445500 Rh7BG445600 Rh7BG445700
rosa_wichuraiana	Rw0G005140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	45
AarI	CACCTGC	3 cut(s)	314, 509, 1180
AasI	GACNNNNNNGTC	1 cut(s)	695
Acc36I	ACCTGC	4 cut(s)	314, 509, 1066, 1180
AccB1I	GGYRCC	1 cut(s)	1117
AccII	CGCG	1 cut(s)	985
AciI	CCGC	4 cut(s)	543, 920, 985, 1073
AclWI	GGATC	3 cut(s)	404, 417, 599
AcsI	RAATTY	1 cut(s)	252
AcuI	CTGAAG	1 cut(s)	849
AcyI	GRCGYC	1 cut(s)	696
AfaI	GTAC	3 cut(s)	69, 665, 724
AfiI	CCNNNNNNNGG	1 cut(s)	1100
AgsI	TTSAA	5 cut(s)	244, 422, 457, 709, 963
AjuI	GAANNNNNNNTTGG	2 cut(s)	1195, 1227
AleI	CACNNNNGTG	1 cut(s)	671
AloI	GAACNNNNNNTCC	4 cut(s)	373, 405, 825, 857
AluBI	AGCT	1 cut(s)	878
AluI	AGCT	1 cut(s)	878
Alw26I	GTCTC	5 cut(s)	15, 352, 393, 563, 639
AlwI	GGATC	3 cut(s)	404, 417, 599
AoxI	GGCC	1 cut(s)	575
ApeKI	GCWGC	3 cut(s)	446, 461, 1255
ApoI	RAATTY	1 cut(s)	252
Asp700I	GAANNNNTTC	1 cut(s)	958
AspLEI	GCGC	1 cut(s)	985
AspS9I	GGNCC	1 cut(s)	1070
AsuHPI	GGTGA	6 cut(s)	47, 173, 260, 338, 1134, 1161
AvaII	GGWCC	1 cut(s)	1070
BamHI	GGATCC	1 cut(s)	409
BanI	GGYRCC	1 cut(s)	1117
BbvI	GCAGC	3 cut(s)	448, 458, 1267
BccI	CCATC	4 cut(s)	89, 161, 1139, 1174
BclI	TGATCA	2 cut(s)	259, 817
BcoDI	GTCTC	5 cut(s)	15, 352, 393, 563, 639
BfaI	CTAG	2 cut(s)	600, 1122
BfuAI	ACCTGC	4 cut(s)	314, 509, 1066, 1180
BisI	GCNGC	3 cut(s)	447, 462, 1256
BlsI	GCNGC	3 cut(s)	448, 463, 1257
Bme18I	GGWCC	1 cut(s)	1070
BmgT120I	GGNCC	1 cut(s)	1070
BmiI	GGNNCC	4 cut(s)	390, 411, 1071, 1119
BmrI	ACTGGG	3 cut(s)	765, 774, 839
BmuI	ACTGGG	3 cut(s)	765, 774, 839
BpmI	CTGGAG	2 cut(s)	703, 1209
BsaAI	YACGTR	1 cut(s)	118
BsaHI	GRCGYC	1 cut(s)	696
BsaI	GGTCTC	1 cut(s)	639
BsaJI	CCNNGG	4 cut(s)	669, 739, 1094, 1113
Bsc4I	CCNNNNNNNGG	1 cut(s)	1100
Bse1I	ACTGG	9 cut(s)	493, 720, 760, 769, 836, 845, 1193, 1206, 1226
Bse3DI	GCAATG	1 cut(s)	997
BseDI	CCNNGG	4 cut(s)	669, 739, 1094, 1113
BseGI	GGATG	2 cut(s)	154, 1131
BseLI	CCNNNNNNNGG	1 cut(s)	1100
BseMI	GCAATG	1 cut(s)	997
BseMII	CTCAG	1 cut(s)	384
BseNI	ACTGG	9 cut(s)	493, 720, 760, 769, 836, 845, 1193, 1206, 1226
BseRI	GAGGAG	3 cut(s)	206, 704, 958
BseXI	GCAGC	3 cut(s)	448, 458, 1267
BseYI	CCCAGC	1 cut(s)	651
BsgI	GTGCAG	1 cut(s)	879
Bsh1236I	CGCG	1 cut(s)	985
BshFI	GGCC	1 cut(s)	577
BshNI	GGYRCC	1 cut(s)	1117
BsiSI	CCGG	1 cut(s)	693
BslFI	GGGAC	3 cut(s)	634, 783, 1010
BslI	CCNNNNNNNGG	1 cut(s)	1100
BsmAI	GTCTC	5 cut(s)	15, 352, 393, 563, 639
BsmFI	GGGAC	3 cut(s)	634, 783, 1010
BsmI	GAATGC	1 cut(s)	520
BsnI	GGCC	1 cut(s)	577
Bso31I	GGTCTC	1 cut(s)	639
Bsp1407I	TGTACA	1 cut(s)	67
Bsp143I	GATC	4 cut(s)	259, 409, 591, 817
BspACI	CCGC	4 cut(s)	543, 920, 985, 1073
BspANI	GGCC	1 cut(s)	577
BspCNI	CTCAG	1 cut(s)	385
BspFNI	CGCG	1 cut(s)	985
BspLI	GGNNCC	4 cut(s)	390, 411, 1071, 1119
BspMI	ACCTGC	4 cut(s)	314, 509, 1066, 1180
BspPI	GGATC	3 cut(s)	404, 417, 599
BspT107I	GGYRCC	1 cut(s)	1117
BspTNI	GGTCTC	1 cut(s)	639
BsrDI	GCAATG	1 cut(s)	997
BsrGI	TGTACA	1 cut(s)	67
BsrI	ACTGG	9 cut(s)	493, 720, 760, 769, 836, 845, 1193, 1206, 1226
BssECI	CCNNGG	4 cut(s)	669, 739, 1094, 1113
BssMI	GATC	4 cut(s)	259, 409, 591, 817
BssNI	GRCGYC	1 cut(s)	696
BssT1I	CCWWGG	4 cut(s)	669, 739, 1094, 1113
Bst4CI	ACNGT	4 cut(s)	209, 417, 435, 727
BstACI	GRCGYC	1 cut(s)	696
BstAUI	TGTACA	1 cut(s)	67
BstBAI	YACGTR	1 cut(s)	118
BstC8I	GCNNGC	3 cut(s)	541, 781, 981
BstDEI	CTNAG	2 cut(s)	393, 747
BstF5I	GGATG	2 cut(s)	154, 1131
BstFNI	CGCG	1 cut(s)	985
BstHHI	GCGC	1 cut(s)	985
BstKTI	GATC	4 cut(s)	262, 412, 594, 820
BstMAI	GTCTC	5 cut(s)	15, 352, 393, 563, 639
BstMBI	GATC	4 cut(s)	259, 409, 591, 817
BstMWI	GCNNNNNNNGC	4 cut(s)	446, 693, 1088, 1255
BstNSI	RCATGY	1 cut(s)	543
BstUI	CGCG	1 cut(s)	985
BstV1I	GCAGC	3 cut(s)	448, 458, 1267
BstX2I	RGATCY	2 cut(s)	409, 591
BstYI	RGATCY	2 cut(s)	409, 591
BsuRI	GGCC	1 cut(s)	577
BtsCI	GGATG	2 cut(s)	154, 1131
BtsIMutI	CAGTG	2 cut(s)	1200, 1213
BveI	ACCTGC	4 cut(s)	314, 509, 1066, 1180
Cac8I	GCNNGC	3 cut(s)	541, 781, 981
CfoI	GCGC	1 cut(s)	985
Cfr13I	GGNCC	1 cut(s)	1070
CseI	GACGC	1 cut(s)	685
Csp6I	GTAC	3 cut(s)	68, 664, 723
CviAII	CATG	6 cut(s)	71, 235, 269, 403, 540, 1127
CviQI	GTAC	3 cut(s)	68, 664, 723
DdeI	CTNAG	2 cut(s)	393, 747
DpnI	GATC	4 cut(s)	261, 411, 593, 819
DpnII	GATC	4 cut(s)	259, 409, 591, 817
DrdI	GACNNNNNNGTC	1 cut(s)	695
DseDI	GACNNNNNNGTC	1 cut(s)	695
Eco130I	CCWWGG	4 cut(s)	669, 739, 1094, 1113
Eco31I	GGTCTC	1 cut(s)	639
Eco47I	GGWCC	1 cut(s)	1070
Eco57I	CTGAAG	1 cut(s)	849
EcoT14I	CCWWGG	4 cut(s)	669, 739, 1094, 1113
ErhI	CCWWGG	4 cut(s)	669, 739, 1094, 1113
FaeI	CATG	6 cut(s)	74, 238, 272, 406, 543, 1130
FalI	AAGNNNNNCTT	4 cut(s)	556, 588, 662, 694
FaqI	GGGAC	3 cut(s)	634, 783, 1010
FatI	CATG	6 cut(s)	70, 234, 268, 402, 539, 1126
FauI	CCCGC	1 cut(s)	978
FbaI	TGATCA	2 cut(s)	259, 817
Fnu4HI	GCNGC	3 cut(s)	447, 462, 1256
FokI	GGATG	2 cut(s)	161, 1118
Fsp4HI	GCNGC	3 cut(s)	447, 462, 1256
FspBI	CTAG	2 cut(s)	600, 1122
GlaI	GCGC	1 cut(s)	984
GluI	GCNGC	3 cut(s)	447, 462, 1256
GsaI	CCCAGC	1 cut(s)	655
GsuI	CTGGAG	2 cut(s)	703, 1209
HaeIII	GGCC	1 cut(s)	577
HapII	CCGG	1 cut(s)	693
HgaI	GACGC	1 cut(s)	685
HhaI	GCGC	1 cut(s)	985
Hin1I	GRCGYC	1 cut(s)	696
Hin1II	CATG	6 cut(s)	74, 238, 272, 406, 543, 1130
Hin6I	GCGC	1 cut(s)	983
HinP1I	GCGC	1 cut(s)	983
HincII	GTYRAC	2 cut(s)	333, 427
HindII	GTYRAC	2 cut(s)	333, 427
HinfI	GANTC	4 cut(s)	240, 329, 689, 1147
HpaI	GTTAAC	1 cut(s)	427
HpaII	CCGG	1 cut(s)	693
HphI	GGTGA	6 cut(s)	47, 173, 260, 338, 1134, 1161
Hpy166II	GTNNAC	4 cut(s)	333, 341, 427, 666
Hpy188I	TCNGA	4 cut(s)	259, 822, 929, 1107
Hpy188III	TCNNGA	4 cut(s)	392, 469, 679, 1040
Hpy8I	GTNNAC	4 cut(s)	333, 341, 427, 666
Hpy99I	CGWCG	1 cut(s)	701
HpyAV	CCTTC	6 cut(s)	7, 32, 146, 400, 1055, 1161
HpyCH4III	ACNGT	4 cut(s)	209, 417, 435, 727
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	6 cut(s)	518, 539, 783, 896, 979, 1175
HpyF10VI	GCNNNNNNNGC	4 cut(s)	446, 693, 1088, 1255
HpyF3I	CTNAG	2 cut(s)	393, 747
HpySE526I	ACGT	1 cut(s)	117
Hsp92I	GRCGYC	1 cut(s)	696
Hsp92II	CATG	6 cut(s)	74, 238, 272, 406, 543, 1130
HspAI	GCGC	1 cut(s)	983
Ksp22I	TGATCA	2 cut(s)	259, 817
KspAI	GTTAAC	1 cut(s)	427
Kzo9I	GATC	4 cut(s)	259, 409, 591, 817
Lsp1109I	GCAGC	3 cut(s)	448, 458, 1267
MaeI	CTAG	2 cut(s)	600, 1122
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	3 cut(s)	623, 880, 1197
MalI	GATC	4 cut(s)	261, 411, 593, 819
MboI	GATC	4 cut(s)	259, 409, 591, 817
MboII	GAAGA	7 cut(s)	62, 104, 176, 290, 311, 523, 842
MflI	RGATCY	2 cut(s)	409, 591
MluCI	AATT	4 cut(s)	252, 281, 452, 584
MlyI	GAGTC	2 cut(s)	338, 683
MroXI	GAANNNNTTC	1 cut(s)	958
MseI	TTAA	4 cut(s)	426, 507, 525, 1230
MslI	CAYNNNNRTG	3 cut(s)	267, 273, 671
MspA1I	CMGCKG	1 cut(s)	878
MspI	CCGG	1 cut(s)	693
Mva1269I	GAATGC	1 cut(s)	520
MvnI	CGCG	1 cut(s)	985
MwoI	GCNNNNNNNGC	4 cut(s)	446, 693, 1088, 1255
NdeII	GATC	4 cut(s)	259, 409, 591, 817
NlaIII	CATG	6 cut(s)	74, 238, 272, 406, 543, 1130
NlaIV	GGNNCC	4 cut(s)	390, 411, 1071, 1119
NmuCI	GTSAC	2 cut(s)	623, 880
NspI	RCATGY	1 cut(s)	543
OliI	CACNNNNGTG	1 cut(s)	671
PaeI	GCATGC	1 cut(s)	543
PaqCI	CACCTGC	3 cut(s)	314, 509, 1180
PctI	GAATGC	1 cut(s)	520
PdmI	GAANNNNTTC	1 cut(s)	958
PfeI	GAWTC	2 cut(s)	240, 1147
PflFI	GACNNNGTC	1 cut(s)	646
PkrI	GCNGC	3 cut(s)	448, 463, 1257
PleI	GAGTC	2 cut(s)	337, 683
PpsI	GAGTC	2 cut(s)	337, 683
Ppu21I	YACGTR	1 cut(s)	118
PsiI	TTATAA	1 cut(s)	45
PspFI	CCCAGC	1 cut(s)	651
PspN4I	GGNNCC	4 cut(s)	390, 411, 1071, 1119
PspPI	GGNCC	1 cut(s)	1070
PsuI	RGATCY	2 cut(s)	409, 591
PsyI	GACNNNGTC	1 cut(s)	646
PvuII	CAGCTG	1 cut(s)	878
RsaI	GTAC	3 cut(s)	69, 665, 724
RsaNI	GTAC	3 cut(s)	68, 664, 723
RseI	CAYNNNNRTG	3 cut(s)	267, 273, 671
SaqAI	TTAA	4 cut(s)	426, 507, 525, 1230
SatI	GCNGC	3 cut(s)	447, 462, 1256
Sau3AI	GATC	4 cut(s)	259, 409, 591, 817
Sau96I	GGNCC	1 cut(s)	1070
SchI	GAGTC	2 cut(s)	338, 683
SinI	GGWCC	1 cut(s)	1070
SmiMI	CAYNNNNRTG	3 cut(s)	267, 273, 671
SphI	GCATGC	1 cut(s)	543
Sse9I	AATT	4 cut(s)	252, 281, 452, 584
SsiI	CCGC	4 cut(s)	543, 920, 985, 1073
SspMI	CTAG	2 cut(s)	600, 1122
StyI	CCWWGG	4 cut(s)	669, 739, 1094, 1113
TaaI	ACNGT	4 cut(s)	209, 417, 435, 727
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	1 cut(s)	908
TaqII	GACCGA	1 cut(s)	621
TasI	AATT	4 cut(s)	252, 281, 452, 584
TatI	WGTACW	2 cut(s)	67, 663
TfiI	GAWTC	2 cut(s)	240, 1147
Tru1I	TTAA	4 cut(s)	426, 507, 525, 1230
Tru9I	TTAA	4 cut(s)	426, 507, 525, 1230
TscAI	CASTG	2 cut(s)	1200, 1213
TseFI	GTSAC	2 cut(s)	623, 880
TseI	GCWGC	3 cut(s)	446, 461, 1255
Tsp45I	GTSAC	2 cut(s)	623, 880
TspDTI	ATGAA	8 cut(s)	63, 105, 165, 333, 419, 819, 1074, 1143
TspRI	CASTG	2 cut(s)	1200, 1213
Tth111I	GACNNNGTC	1 cut(s)	646
VpaK11BI	GGWCC	1 cut(s)	1070
XapI	RAATTY	1 cut(s)	252
XceI	RCATGY	1 cut(s)	543
XmnI	GAANNNNTTC	1 cut(s)	958
XspI	CTAG	2 cut(s)	600, 1122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.