Rh3DG150400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0003968
Physical Location & Seq
Reverse (-)
12901938 .. 12916761
14824 bp
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UTR
Exon/CDS
Intron
Rh3DG150400.1

Sequence Viewer

Length: 1473 bp
ATGGTCATAGAGGAGTCAGCTGATGAGTATTGGAGATATGAATTTAGGGTTTATGGGACCCCTGAATTTCATAGTGAGGGTTTTACTCTAGAAATACACCATGGAGGGAGCTTTGTTGATGCAGGTGGTGGGCAACACAAATACATTGGAGGTGAAGTTCATTGGCTTGAAAAGCTTGATCCAGAAAAGACTTCATGGTTGGAGCTCAACACATTTGCTTGGAGACTTGGTTATAGGGAACCACCAGTTCACTATTGGTTCAAGCACCCATATTTGTCATGGTACATTCCCGTAAAAGATGACAAAGATACAGCCAAGATGATTAAATCTTTGCCAAAAAATAGAATTGTGATAATTTATTTTGTTGGTGGAGGTGTTAGGAGGGTAGAAGAAGCTGTGGCAGAGTTAGAGAAGGATGACTATGAGGAAATAATACCGCACATAAGGTTCAAGCCAGAGATAATTATGGCTAGACTAAGGGCTGTTGACGTTGGTCAAAGTTCTTTTGGTCATACAAGTGCATTTGAATATCCAATTTCTCAATTGACTGAAGGTTCATTTGGTGGTCTAAGTAGTCAAACAATGGGGCATGGTGTTCTTTACCTTACTGATGAGCTAAATGGAGTAAAAGGTGTAGAACAAGACAAAACAGATGATGTAGGAGACTTGAGCAAGTTTGTGGATCATGTTGAAGAAGAATTTGAAGATGAAGACTCAGAAGATGAGGACTATGTACCTCCAGACCCTTCAGAACCACCAGAGGAAGTGCTAGTTGATAGTGATTATGAAATCTTGCCAGAAGATGATAATGAGTTAGTACATGTGGTGGATGAAAGACAAGATGATGCAGACTTTAATAAACATGTTGACAATGAAGATGTCTTTGAAGAGTTCCATGACATGGGATATGCAGGTTATATCTCAGACCATTCTAATGATAGTGAAGAGTTGAGGGAGAAAGATGAATTAGATTCAGATTCAGATGAGGCAGCAAGTAACAGAAAGAAGAAGAAAAAGGTTAAGCTAGGTAGGACATGGGTTCCAGAAAGGGATATGAAAGACCCAAAATTTGAGCTTGGCCAACATTTTGCCAACTCCAAACAGTTCAAGGAAGCTATGAAGAAATATGCAGTGAAGAATGGGTTGAATTTATCTTTCAATAAGAACACAGCTAAGAAAGTTCAAGTGGGACAAAGTAGTGGAGTTCCTGGAAATGTAAGGGTGAATGTGGATGTGAGTGTTGGAAAAAAGGGTGCTAACAATGTGAATGTACAAGCCAAGAGAGCACCAAAGGCATCAAGGGCACCTTCACCAAGAGTACCTAGGAGGGGAGGTCATACATTAGCCTCTGTTGCCTCTTCTCAAAGGTCAAGTAGTACTGCCCCTGCATCATCTTCTCAAGCAACAGATTCATCACATGCAAGTAAAAGGGCAACAAGACAGCCTGTTAAAAAGGCAATATGGAATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

490

Amino Acids

55.31

Weight (kDa)

5.18

Isoelectric Point (pI)

46.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1-like PF26130 26 - 121 2.8e-16 PB1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 113
Acc36I ACCTGC 2 cut(s) 113, 902
AccB1I GGYRCC 1 cut(s) 1303
AccB7I CCANNNNNTGG 1 cut(s) 901
AciI CCGC 1 cut(s) 437
AclWI GGATC 2 cut(s) 173, 690
AcoI YGGCCR 1 cut(s) 1078
AcsI RAATTY 5 cut(s) 41, 65, 698, 1067, 1147
AcuI CTGAAG 2 cut(s) 570, 732
AfaI GTAC 6 cut(s) 284, 735, 819, 1272, 1320, 1378
AfiI CCNNNNNNNGG 2 cut(s) 901, 1328
AflIII ACRYGT 2 cut(s) 820, 862
AjnI CCWGG 1 cut(s) 1207
AjuI GAANNNNNNNTTGG 2 cut(s) 543, 575
AloI GAACNNNNNNTCC 2 cut(s) 141, 173
Alw21I GWGCWC 2 cut(s) 207, 1288
Alw26I GTCTC 2 cut(s) 217, 657
AlwI GGATC 2 cut(s) 173, 690
AoxI GGCC 1 cut(s) 1078
ApeKI GCWGC 1 cut(s) 989
ApoI RAATTY 5 cut(s) 41, 65, 698, 1067, 1147
ArsI GACNNNNNNTTYG 2 cut(s) 1052, 1084
AspA2I CCTAGG 1 cut(s) 1322
AspS9I GGNCC 1 cut(s) 57
AsuHPI GGTGA 3 cut(s) 164, 1234, 1302
AvaII GGWCC 1 cut(s) 57
AvrII CCTAGG 1 cut(s) 1322
BaeGI GKGCMC 1 cut(s) 1306
BalI TGGCCA 1 cut(s) 1080
BanI GGYRCC 1 cut(s) 1303
BanII GRGCYC 1 cut(s) 207
BbsI GAAGAC 1 cut(s) 717
Bbv12I GWGCWC 2 cut(s) 207, 1288
BbvI GCAGC 1 cut(s) 1001
BciT130I CCWGG 1 cut(s) 1209
BcoDI GTCTC 2 cut(s) 217, 657
BfaI CTAG 5 cut(s) 89, 471, 770, 1025, 1323
BfuAI ACCTGC 2 cut(s) 113, 902
BisI GCNGC 1 cut(s) 990
BlnI CCTAGG 1 cut(s) 1322
BlsI GCNGC 1 cut(s) 991
BmcAI AGTACT 1 cut(s) 1378
Bme1390I CCNGG 1 cut(s) 1209
Bme18I GGWCC 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 57
BmiI GGNNCC 5 cut(s) 58, 59, 240, 1041, 1305
BmrFI CCNGG 1 cut(s) 1209
BmsI GCATC 4 cut(s) 109, 835, 1304, 1397
BoxI GACNNNNGTC 1 cut(s) 492
BpiI GAAGAC 1 cut(s) 717
BpmI CTGGAG 1 cut(s) 723
BpuEI CTTGAG 2 cut(s) 688, 1383
BsaJI CCNNGG 2 cut(s) 100, 1322
BsaXI ACNNNNNCTCC 6 cut(s) 141, 171, 214, 244, 1318, 1348
Bsc4I CCNNNNNNNGG 2 cut(s) 901, 1328
Bse1I ACTGG 1 cut(s) 245
BseBI CCWGG 1 cut(s) 1209
BseDI CCNNGG 2 cut(s) 100, 1322
BseGI GGATG 3 cut(s) 421, 835, 1237
BseLI CCNNNNNNNGG 2 cut(s) 901, 1328
BseMII CTCAG 2 cut(s) 729, 936
BseNI ACTGG 1 cut(s) 245
BseRI GAGGAG 1 cut(s) 26
BseSI GKGCMC 1 cut(s) 1306
BseXI GCAGC 1 cut(s) 1001
BshFI GGCC 1 cut(s) 1080
BshNI GGYRCC 1 cut(s) 1303
BsiHKAI GWGCWC 2 cut(s) 207, 1288
BslFI GGGAC 2 cut(s) 70, 1203
BslI CCNNNNNNNGG 2 cut(s) 901, 1328
BsmAI GTCTC 2 cut(s) 217, 657
BsmFI GGGAC 2 cut(s) 70, 1203
BsnI GGCC 1 cut(s) 1080
Bsp1286I GDGCHC 3 cut(s) 207, 1288, 1306
Bsp1407I TGTACA 1 cut(s) 1270
Bsp143I GATC 2 cut(s) 178, 682
Bsp19I CCATGG 1 cut(s) 100
BspACI CCGC 1 cut(s) 437
BspANI GGCC 1 cut(s) 1080
BspCNI CTCAG 2 cut(s) 728, 935
BspLI GGNNCC 5 cut(s) 58, 59, 240, 1041, 1305
BspMI ACCTGC 2 cut(s) 113, 902
BspPI GGATC 2 cut(s) 173, 690
BspT107I GGYRCC 1 cut(s) 1303
BsrGI TGTACA 1 cut(s) 1270
BsrI ACTGG 1 cut(s) 245
BssECI CCNNGG 2 cut(s) 100, 1322
BssMI GATC 2 cut(s) 178, 682
BssT1I CCWWGG 2 cut(s) 100, 1322
Bst2UI CCWGG 1 cut(s) 1209
Bst4CI ACNGT 1 cut(s) 1104
Bst6I CTCTTC 3 cut(s) 882, 939, 1363
BstAUI TGTACA 1 cut(s) 1270
BstDEI CTNAG 5 cut(s) 476, 569, 715, 922, 1173
BstDSI CCRYGG 1 cut(s) 100
BstF5I GGATG 3 cut(s) 421, 835, 1237
BstKTI GATC 2 cut(s) 181, 685
BstMAI GTCTC 2 cut(s) 217, 657
BstMBI GATC 2 cut(s) 178, 682
BstMWI GCNNNNNNNGC 5 cut(s) 172, 1283, 1292, 1301, 1352
BstNI CCWGG 1 cut(s) 1209
BstNSI RCATGY 3 cut(s) 824, 866, 1421
BstPAI GACNNNNGTC 1 cut(s) 492
BstSCI CCNGG 1 cut(s) 1207
BstSLI GKGCMC 1 cut(s) 1306
BstV1I GCAGC 1 cut(s) 1001
BstV2I GAAGAC 1 cut(s) 717
BsuRI GGCC 1 cut(s) 1080
BtgI CCRYGG 1 cut(s) 100
BtsCI GGATG 3 cut(s) 421, 835, 1237
BtsI GCAGTG 1 cut(s) 1137
BtsIMutI CAGTG 1 cut(s) 1137
BveI ACCTGC 2 cut(s) 113, 902
Cfr13I GGNCC 1 cut(s) 57
Csp6I GTAC 6 cut(s) 283, 734, 818, 1271, 1319, 1377
CviQI GTAC 6 cut(s) 283, 734, 818, 1271, 1319, 1377
DdeI CTNAG 5 cut(s) 476, 569, 715, 922, 1173
DpnI GATC 2 cut(s) 180, 684
DpnII GATC 2 cut(s) 178, 682
EaeI YGGCCR 1 cut(s) 1078
Eam1104I CTCTTC 3 cut(s) 882, 939, 1363
EarI CTCTTC 3 cut(s) 882, 939, 1363
Ecl136II GAGCTC 1 cut(s) 205
Eco130I CCWWGG 2 cut(s) 100, 1322
Eco24I GRGCYC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 57
Eco53kI GAGCTC 1 cut(s) 205
Eco57I CTGAAG 2 cut(s) 570, 732
EcoICRI GAGCTC 1 cut(s) 205
EcoO109I RGGNCCY 1 cut(s) 57
EcoRII CCWGG 1 cut(s) 1207
EcoT14I CCWWGG 2 cut(s) 100, 1322
EcoT38I GRGCYC 1 cut(s) 207
ErhI CCWWGG 2 cut(s) 100, 1322
FalI AAGNNNNNCTT 2 cut(s) 1291, 1323
FaqI GGGAC 2 cut(s) 70, 1203
Fnu4HI GCNGC 1 cut(s) 990
FokI GGATG 3 cut(s) 428, 842, 1244
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 1 cut(s) 990
FspBI CTAG 5 cut(s) 89, 471, 770, 1025, 1323
GluI GCNGC 1 cut(s) 990
GsuI CTGGAG 1 cut(s) 723
HaeIII GGCC 1 cut(s) 1080
HincII GTYRAC 2 cut(s) 487, 868
HindII GTYRAC 2 cut(s) 487, 868
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 5 cut(s) 14, 713, 971, 977, 1409
HphI GGTGA 3 cut(s) 164, 1234, 1302
Hpy166II GTNNAC 3 cut(s) 250, 487, 868
Hpy188I TCNGA 5 cut(s) 718, 751, 925, 976, 982
Hpy188III TCNNGA 4 cut(s) 89, 182, 740, 1043
Hpy8I GTNNAC 3 cut(s) 250, 487, 868
HpyAV CCTTC 4 cut(s) 406, 545, 756, 1317
HpyCH4III ACNGT 1 cut(s) 1104
HpyCH4IV ACGT 1 cut(s) 489
HpyCH4V TGCA 7 cut(s) 122, 521, 848, 911, 1130, 1388, 1421
HpyF10VI GCNNNNNNNGC 5 cut(s) 172, 1283, 1292, 1301, 1352
HpyF3I CTNAG 5 cut(s) 476, 569, 715, 922, 1173
HpySE526I ACGT 1 cut(s) 489
KflI GGGWCCC 1 cut(s) 57
Kzo9I GATC 2 cut(s) 178, 682
LmnI GCTCC 2 cut(s) 108, 202
Lsp1109I GCAGC 1 cut(s) 1001
LweI GCATC 4 cut(s) 109, 835, 1304, 1397
MaeI CTAG 5 cut(s) 89, 471, 770, 1025, 1323
MaeII ACGT 1 cut(s) 489
MaeIII GTNAC 1 cut(s) 995
MalI GATC 2 cut(s) 180, 684
MboI GATC 2 cut(s) 178, 682
MfeI CAATTG 1 cut(s) 542
MhlI GDGCHC 3 cut(s) 207, 1288, 1306
MlsI TGGCCA 1 cut(s) 1080
MluNI TGGCCA 1 cut(s) 1080
MlyI GAGTC 2 cut(s) 23, 707
MmeI TCCRAC 2 cut(s) 180, 1222
Mox20I TGGCCA 1 cut(s) 1080
MscI TGGCCA 1 cut(s) 1080
MseI TTAA 4 cut(s) 324, 855, 1020, 1449
MslI CAYNNNNRTG 2 cut(s) 516, 933
Msp20I TGGCCA 1 cut(s) 1080
MspA1I CMGCKG 1 cut(s) 20
MspR9I CCNGG 1 cut(s) 1209
MunI CAATTG 1 cut(s) 542
MvaI CCWGG 1 cut(s) 1209
MwoI GCNNNNNNNGC 5 cut(s) 172, 1283, 1292, 1301, 1352
NcoI CCATGG 1 cut(s) 100
NdeII GATC 2 cut(s) 178, 682
NlaIV GGNNCC 5 cut(s) 58, 59, 240, 1041, 1305
NspI RCATGY 3 cut(s) 824, 866, 1421
PaqCI CACCTGC 1 cut(s) 113
PciI ACATGT 2 cut(s) 820, 862
PfeI GAWTC 3 cut(s) 971, 977, 1409
PflMI CCANNNNNTGG 1 cut(s) 901
PfoI TCCNGGA 1 cut(s) 1207
PkrI GCNGC 1 cut(s) 991
PleI GAGTC 2 cut(s) 22, 707
PpsI GAGTC 2 cut(s) 22, 707
PpuMI RGGWCCY 1 cut(s) 57
PscI ACATGT 2 cut(s) 820, 862
PshAI GACNNNNGTC 1 cut(s) 492
Psp124BI GAGCTC 1 cut(s) 207
Psp5II RGGWCCY 1 cut(s) 57
Psp6I CCWGG 1 cut(s) 1207
PspGI CCWGG 1 cut(s) 1207
PspN4I GGNNCC 5 cut(s) 58, 59, 240, 1041, 1305
PspPI GGNCC 1 cut(s) 57
PspPPI RGGWCCY 1 cut(s) 57
PvuII CAGCTG 1 cut(s) 20
RsaI GTAC 6 cut(s) 284, 735, 819, 1272, 1320, 1378
RsaNI GTAC 6 cut(s) 283, 734, 818, 1271, 1319, 1377
RseI CAYNNNNRTG 2 cut(s) 516, 933
SacI GAGCTC 1 cut(s) 207
SaqAI TTAA 4 cut(s) 324, 855, 1020, 1449
SatI GCNGC 1 cut(s) 990
Sau3AI GATC 2 cut(s) 178, 682
Sau96I GGNCC 1 cut(s) 57
ScaI AGTACT 1 cut(s) 1378
SchI GAGTC 2 cut(s) 23, 707
ScrFI CCNGG 1 cut(s) 1209
SduI GDGCHC 3 cut(s) 207, 1288, 1306
SfaNI GCATC 4 cut(s) 109, 835, 1304, 1397
SinI GGWCC 1 cut(s) 57
SmiMI CAYNNNNRTG 2 cut(s) 516, 933
SmlI CTYRAG 2 cut(s) 667, 1398
SmoI CTYRAG 2 cut(s) 667, 1398
SsiI CCGC 1 cut(s) 437
SspMI CTAG 5 cut(s) 89, 471, 770, 1025, 1323
SstI GAGCTC 1 cut(s) 207
StyD4I CCNGG 1 cut(s) 1207
StyI CCWWGG 2 cut(s) 100, 1322
TaaI ACNGT 1 cut(s) 1104
TaiI ACGT 1 cut(s) 492
TatI WGTACW 3 cut(s) 817, 1270, 1376
TfiI GAWTC 3 cut(s) 971, 977, 1409
Tru1I TTAA 4 cut(s) 324, 855, 1020, 1449
Tru9I TTAA 4 cut(s) 324, 855, 1020, 1449
TscAI CASTG 1 cut(s) 1137
TseI GCWGC 1 cut(s) 989
TspRI CASTG 1 cut(s) 1137
Van91I CCANNNNNTGG 1 cut(s) 901
VpaK11BI GGWCC 1 cut(s) 57
XapI RAATTY 5 cut(s) 41, 65, 698, 1067, 1147
XbaI TCTAGA 1 cut(s) 88
XceI RCATGY 3 cut(s) 824, 866, 1421
XcmI CCANNNNNNNNNTGG 2 cut(s) 252, 276
XmaJI CCTAGG 1 cut(s) 1322
XspI CTAG 5 cut(s) 89, 471, 770, 1025, 1323
ZrmI AGTACT 1 cut(s) 1378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.