Rh2DG252100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0003968
Physical Location & Seq
Forward (+)
26097353 .. 26098359
1007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG252100.1

Sequence Viewer

Length: 384 bp
ATGGAAGAGTTTTCGGGAGAATTTCGGATTTTGGGTCAACCCACATATAACAGTCAAGGTTTCACTCTTCAAATACATCATGGAGGTGATTTTGTCAAAGAGGCTGCTGGGCATAAATATGAGGGAGGTCAACTGTGTTGGGCAGAGTTGCTAGACCCAGACAAGATTTCTTGGATAGAGCTCAATACTTTTGCTTGGAGGTTGGGATATAGGAAGCCACCAGTGCACTATTGGTTCAAGCATCCTAACATGTCAGTATTCTTGCCGATAACCAAAGATGAGAATGTACAAAAGATGGTGAGGCTACTGCCAAGTTCCAGGATTATACAAATTTATTATGTTGGTGGAGGGCAGAGGCAAGTCGAACTTGCGGAAATGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

127

Amino Acids

14.77

Weight (kDa)

6.2

Isoelectric Point (pI)

42.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1-like PF26130 20 - 113 2.9e-16 PB1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 371
AcsI RAATTY 2 cut(s) 20, 330
AfaI GTAC 1 cut(s) 288
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 2 cut(s) 71, 238
AjnI CCWGG 1 cut(s) 317
AluBI AGCT 1 cut(s) 181
AluI AGCT 1 cut(s) 181
Alw21I GWGCWC 2 cut(s) 183, 228
Alw44I GTGCAC 1 cut(s) 224
ApaLI GTGCAC 1 cut(s) 224
ApeKI GCWGC 1 cut(s) 104
ApoI RAATTY 2 cut(s) 20, 330
AsuHPI GGTGA 2 cut(s) 98, 310
BaeGI GKGCMC 1 cut(s) 228
BanII GRGCYC 1 cut(s) 183
Bbv12I GWGCWC 2 cut(s) 183, 228
BbvI GCAGC 1 cut(s) 91
BccI CCATC 1 cut(s) 289
BciT130I CCWGG 1 cut(s) 319
BfaI CTAG 1 cut(s) 152
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
Bme1390I CCNGG 1 cut(s) 319
BmrFI CCNGG 1 cut(s) 319
BmsI GCATC 1 cut(s) 250
Bse1I ACTGG 1 cut(s) 221
BseBI CCWGG 1 cut(s) 319
BseGI GGATG 1 cut(s) 241
BseNI ACTGG 1 cut(s) 221
BseSI GKGCMC 1 cut(s) 228
BseXI GCAGC 1 cut(s) 91
BseYI CCCAGC 1 cut(s) 107
BsiHKAI GWGCWC 2 cut(s) 183, 228
Bsp1286I GDGCHC 2 cut(s) 183, 228
Bsp1407I TGTACA 1 cut(s) 286
BspACI CCGC 1 cut(s) 371
BsrGI TGTACA 1 cut(s) 286
BsrI ACTGG 1 cut(s) 221
Bst2UI CCWGG 1 cut(s) 319
Bst4CI ACNGT 2 cut(s) 53, 135
Bst6I CTCTTC 1 cut(s) 72
BstAUI TGTACA 1 cut(s) 286
BstF5I GGATG 1 cut(s) 241
BstMWI GCNNNNNNNGC 1 cut(s) 223
BstNI CCWGG 1 cut(s) 319
BstNSI RCATGY 1 cut(s) 253
BstSCI CCNGG 1 cut(s) 317
BstSLI GKGCMC 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 91
BtsCI GGATG 1 cut(s) 241
BtsIMutI CAGTG 1 cut(s) 228
Csp6I GTAC 1 cut(s) 287
CviAII CATG 2 cut(s) 80, 250
CviJI RGCY 4 cut(s) 104, 181, 217, 304
CviKI_1 RGCY 4 cut(s) 104, 181, 217, 304
CviQI GTAC 1 cut(s) 287
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Ecl136II GAGCTC 1 cut(s) 181
Eco24I GRGCYC 1 cut(s) 183
Eco53kI GAGCTC 1 cut(s) 181
EcoICRI GAGCTC 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 317
EcoT38I GRGCYC 1 cut(s) 183
FaeI CATG 2 cut(s) 83, 253
FaiI YATR 9 cut(s) 46, 48, 81, 114, 120, 210, 251, 326, 339
FalI AAGNNNNNCTT 2 cut(s) 351, 383
FatI CATG 2 cut(s) 79, 249
Fnu4HI GCNGC 1 cut(s) 105
FokI GGATG 1 cut(s) 228
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 105
FspBI CTAG 1 cut(s) 152
GluI GCNGC 1 cut(s) 105
GsaI CCCAGC 1 cut(s) 111
Hin1II CATG 2 cut(s) 83, 253
HincII GTYRAC 2 cut(s) 38, 131
HindII GTYRAC 2 cut(s) 38, 131
HphI GGTGA 2 cut(s) 98, 310
Hpy166II GTNNAC 3 cut(s) 38, 131, 226
Hpy188I TCNGA 1 cut(s) 27
Hpy188III TCNNGA 1 cut(s) 15
Hpy8I GTNNAC 3 cut(s) 38, 131, 226
HpyCH4III ACNGT 2 cut(s) 53, 135
HpyCH4V TGCA 1 cut(s) 226
HpyF10VI GCNNNNNNNGC 1 cut(s) 223
Hsp92II CATG 2 cut(s) 83, 253
LpnPI CCDG 5 cut(s) 93, 171, 234, 304, 331
Lsp1109I GCAGC 1 cut(s) 91
LweI GCATC 1 cut(s) 250
MaeI CTAG 1 cut(s) 152
MboII GAAGA 2 cut(s) 17, 59
MhlI GDGCHC 2 cut(s) 183, 228
MluCI AATT 2 cut(s) 20, 330
MnlI CCTC 8 cut(s) 77, 94, 115, 119, 192, 294, 341, 348
MslI CAYNNNNRTG 2 cut(s) 84, 117
MspR9I CCNGG 1 cut(s) 319
MvaI CCWGG 1 cut(s) 319
MwoI GCNNNNNNNGC 1 cut(s) 223
NlaIII CATG 2 cut(s) 83, 253
NspI RCATGY 1 cut(s) 253
PciI ACATGT 1 cut(s) 249
PfoI TCCNGGA 1 cut(s) 317
PkrI GCNGC 1 cut(s) 106
PscI ACATGT 1 cut(s) 249
Psp124BI GAGCTC 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 317
PspFI CCCAGC 1 cut(s) 107
PspGI CCWGG 1 cut(s) 317
RsaI GTAC 1 cut(s) 288
RsaNI GTAC 1 cut(s) 287
RseI CAYNNNNRTG 2 cut(s) 84, 117
SacI GAGCTC 1 cut(s) 183
SatI GCNGC 1 cut(s) 105
ScrFI CCNGG 1 cut(s) 319
SduI GDGCHC 2 cut(s) 183, 228
SetI ASST 5 cut(s) 61, 88, 130, 183, 203
SfaNI GCATC 1 cut(s) 250
SmiMI CAYNNNNRTG 2 cut(s) 84, 117
Sse9I AATT 2 cut(s) 20, 330
SsiI CCGC 1 cut(s) 371
SspMI CTAG 1 cut(s) 152
SstI GAGCTC 1 cut(s) 183
StyD4I CCNGG 1 cut(s) 317
TaaI ACNGT 2 cut(s) 53, 135
TaqI TCGA 1 cut(s) 363
TasI AATT 2 cut(s) 20, 330
TatI WGTACW 1 cut(s) 286
TscAI CASTG 1 cut(s) 228
TseI GCWGC 1 cut(s) 104
TspRI CASTG 1 cut(s) 228
VneI GTGCAC 1 cut(s) 224
XapI RAATTY 2 cut(s) 20, 330
XceI RCATGY 1 cut(s) 253
XcmI CCANNNNNNNNNTGG 1 cut(s) 228
XspI CTAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.