Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005561

Physical Location & Seq

Genomic Coordinates Reverse (-)

23236191 .. 23237189

Gene Structure 999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48517

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGTTTCATGCTATTTTACAGGTGAACTTTTCTCCACTCACGCACTTTCCATCCGGTCCTTCCATAGTGGACAGAGAATTGCATTCATATTCAATATGGGCCATCCCACCGAATGATGTGTCTTTTAGGATCAAGAAGTTGATGGAAGGTCTCAGGGCTGAGTTCGGTGGGCCGGAGATCAAACCACATATCACTGTTGTGGGGTCTATTCGTATGACGTATGAAGATGTGCTCAACAAATTCAGATCTCTTCCTTCTAAATATTTTCGTGCATACCAAGCAAAAGTTAATCTAGTGGTTACCAGCAATTTTTATCACCAATGTGTTTCCCTACTCATTGATTCATCAACAGAAGTATCCCATCAGTTAGACTGTACAACTCGCATATGCACTGCACATTGGGGTTTCCATAGCGGTGGTAGGCCATATTTGAGTCTCCTTTACGGGAATCTGACAGAAGAAGAGAGGAAAATAGCTCTAGAAAAAGTTAGTTCTCTAGATAAAAACATTTCCAGCTTGAGTTTCACCATATCTCAACTCGCAGTGTACAAAATCGACTACAGAGATATAACTCTCAAATCATGGGAAAAAATTGCTGAATATGCCCTCCCATTTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000394 GO:0003674 GO:0003824 GO:0004112 GO:0004113 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008033 GO:0008081 GO:0008150 GO:0008152 GO:0008380 GO:0009117 GO:0009187 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019637 GO:0034470 GO:0034641 GO:0034660 GO:0042578 GO:0043170 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0046483 GO:0055086 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2_5_RNA_ligase2 CPDase FBA_1

Protein Analysis

206

Amino Acids

23.56

Weight (kDa)

8.37

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005561)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0111591
rosa_multiflora	Rmu_co8457875.1_g000001 Rmu_sc0001231.1_g000024 Rmu_sc0003693.1_g000012 Rmu_sc0017377.1_g000002 Rmu_sc0020611.1_g000015 Rmu_sc0021422.1_g000001 Rmu_sc0039657.1_g000001 Rmu_ssc0000049.1_g000002
rosa_roxburghii	Rroxscaffold_2G00113100 Rroxscaffold_2G00138830
rosa_rugosa	Rorug01G0262700 Rorug02G0248600 Rorug03G0200700 Rorug04G0203500
rosa_samantha	Rh2AG227800 Rh2AG521100 Rh2BG316300 Rh2CG506100 Rh2DG235900 Rh3CG369900 Rh4BG266200 Rh4CG091300 Rh5BG544200 Rh5CG567800 Rh5DG200900 Rh6AG031000 Rh7BG443100 Rh7CG445100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	414
AclWI	GGATC	1 cut(s)	137
AcsI	RAATTY	1 cut(s)	239
AfaI	GTAC	2 cut(s)	376, 548
AgsI	TTSAA	1 cut(s)	93
AleI	CACNNNNGTG	2 cut(s)	197, 321
AluBI	AGCT	2 cut(s)	476, 516
AluI	AGCT	2 cut(s)	476, 516
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	2 cut(s)	155, 440
AlwI	GGATC	1 cut(s)	137
AoxI	GGCC	3 cut(s)	99, 170, 422
ApoI	RAATTY	1 cut(s)	239
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
AspS9I	GGNCC	3 cut(s)	56, 99, 170
AsuHPI	GGTGA	3 cut(s)	34, 308, 517
AvaII	GGWCC	1 cut(s)	56
BaeI	ACNNNNGTAYC	2 cut(s)	339, 372
Bbv12I	GWGCWC	1 cut(s)	234
BccI	CCATC	4 cut(s)	58, 110, 136, 369
BciVI	GTATCC	1 cut(s)	367
BcoDI	GTCTC	2 cut(s)	155, 440
BfaI	CTAG	3 cut(s)	293, 479, 497
BfmI	CTRYAG	1 cut(s)	559
BfuI	GTATCC	1 cut(s)	367
BglII	AGATCT	1 cut(s)	245
Bme18I	GGWCC	1 cut(s)	56
BmgT120I	GGNCC	3 cut(s)	56, 99, 170
BpuEI	CTTGAG	1 cut(s)	538
BsaI	GGTCTC	1 cut(s)	155
BsaWI	WCCGGW	1 cut(s)	53
BseGI	GGATG	2 cut(s)	50, 102
BseMII	CTCAG	2 cut(s)	150, 166
BsgI	GTGCAG	1 cut(s)	378
BshFI	GGCC	3 cut(s)	101, 172, 424
BsiHKAI	GWGCWC	1 cut(s)	234
BsiSI	CCGG	2 cut(s)	54, 173
BsmAI	GTCTC	2 cut(s)	155, 440
BsmI	GAATGC	1 cut(s)	82
BsnI	GGCC	3 cut(s)	101, 172, 424
Bso31I	GGTCTC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp1407I	TGTACA	2 cut(s)	374, 546
Bsp143I	GATC	3 cut(s)	129, 177, 245
BspACI	CCGC	1 cut(s)	414
BspANI	GGCC	3 cut(s)	101, 172, 424
BspCNI	CTCAG	2 cut(s)	151, 165
BspPI	GGATC	1 cut(s)	137
BspTNI	GGTCTC	1 cut(s)	155
BsrGI	TGTACA	2 cut(s)	374, 546
BssMI	GATC	3 cut(s)	129, 177, 245
Bst4CI	ACNGT	2 cut(s)	196, 374
Bst6I	CTCTTC	2 cut(s)	255, 456
BstAUI	TGTACA	2 cut(s)	374, 546
BstDEI	CTNAG	2 cut(s)	152, 159
BstEII	GGTNACC	1 cut(s)	298
BstF5I	GGATG	2 cut(s)	50, 102
BstKTI	GATC	3 cut(s)	132, 180, 248
BstMAI	GTCTC	2 cut(s)	155, 440
BstMBI	GATC	3 cut(s)	129, 177, 245
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 602
BstPI	GGTNACC	1 cut(s)	298
BstSFI	CTRYAG	1 cut(s)	559
BstX2I	RGATCY	1 cut(s)	245
BstXI	CCANNNNNNTGG	1 cut(s)	416
BstYI	RGATCY	1 cut(s)	245
BsuI	GTATCC	1 cut(s)	367
BsuRI	GGCC	3 cut(s)	101, 172, 424
BtsCI	GGATG	2 cut(s)	50, 102
BtsI	GCAGTG	2 cut(s)	390, 549
BtsIMutI	CAGTG	3 cut(s)	192, 390, 549
Cfr13I	GGNCC	3 cut(s)	56, 99, 170
Csp6I	GTAC	2 cut(s)	375, 547
CviAII	CATG	2 cut(s)	8, 582
CviJI	RGCY	6 cut(s)	101, 158, 172, 424, 476, 516
CviKI_1	RGCY	6 cut(s)	101, 158, 172, 424, 476, 516
CviQI	GTAC	2 cut(s)	375, 547
DdeI	CTNAG	2 cut(s)	152, 159
DpnI	GATC	3 cut(s)	131, 179, 247
DpnII	GATC	3 cut(s)	129, 177, 245
Eam1104I	CTCTTC	2 cut(s)	255, 456
EarI	CTCTTC	2 cut(s)	255, 456
Eco31I	GGTCTC	1 cut(s)	155
Eco47I	GGWCC	1 cut(s)	56
Eco91I	GGTNACC	1 cut(s)	298
EcoO65I	GGTNACC	1 cut(s)	298
FaeI	CATG	2 cut(s)	11, 585
FatI	CATG	2 cut(s)	7, 581
FauNDI	CATATG	1 cut(s)	386
FokI	GGATG	2 cut(s)	37, 89
FspBI	CTAG	3 cut(s)	293, 479, 497
HaeIII	GGCC	3 cut(s)	101, 172, 424
HapII	CCGG	2 cut(s)	54, 173
Hin1II	CATG	2 cut(s)	11, 585
HinfI	GANTC	3 cut(s)	341, 433, 448
HpaII	CCGG	2 cut(s)	54, 173
HphI	GGTGA	3 cut(s)	34, 308, 517
Hpy166II	GTNNAC	3 cut(s)	25, 70, 547
Hpy188I	TCNGA	2 cut(s)	245, 453
Hpy188III	TCNNGA	3 cut(s)	133, 479, 497
Hpy8I	GTNNAC	3 cut(s)	25, 70, 547
HpyAV	CCTTC	3 cut(s)	69, 140, 264
HpyCH4III	ACNGT	2 cut(s)	196, 374
HpyCH4IV	ACGT	1 cut(s)	218
HpyCH4V	TGCA	4 cut(s)	82, 272, 390, 395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 602
HpyF3I	CTNAG	2 cut(s)	152, 159
HpySE526I	ACGT	1 cut(s)	218
Hsp92II	CATG	2 cut(s)	11, 585
Kzo9I	GATC	3 cut(s)	129, 177, 245
LpnPI	CCDG	6 cut(s)	5, 67, 139, 186, 316, 526
MaeI	CTAG	3 cut(s)	293, 479, 497
MaeII	ACGT	1 cut(s)	218
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	3 cut(s)	131, 179, 247
MboI	GATC	3 cut(s)	129, 177, 245
MboII	GAAGA	4 cut(s)	236, 242, 470, 473
MflI	RGATCY	1 cut(s)	245
MhlI	GDGCHC	1 cut(s)	234
MluCI	AATT	4 cut(s)	77, 239, 307, 591
MlyI	GAGTC	1 cut(s)	442
MnlI	CCTC	2 cut(s)	459, 617
MseI	TTAA	1 cut(s)	288
MslI	CAYNNNNRTG	3 cut(s)	197, 321, 414
MspI	CCGG	2 cut(s)	54, 173
Mva1269I	GAATGC	1 cut(s)	82
MwoI	GCNNNNNNNGC	2 cut(s)	278, 602
NdeI	CATATG	1 cut(s)	386
NdeII	GATC	3 cut(s)	129, 177, 245
NlaIII	CATG	2 cut(s)	11, 585
OliI	CACNNNNGTG	2 cut(s)	197, 321
PctI	GAATGC	1 cut(s)	82
PfeI	GAWTC	2 cut(s)	341, 448
PleI	GAGTC	1 cut(s)	441
PpsI	GAGTC	1 cut(s)	441
PspEI	GGTNACC	1 cut(s)	298
PspPI	GGNCC	3 cut(s)	56, 99, 170
PsuI	RGATCY	1 cut(s)	245
RsaI	GTAC	2 cut(s)	376, 548
RsaNI	GTAC	2 cut(s)	375, 547
RseI	CAYNNNNRTG	3 cut(s)	197, 321, 414
SaqAI	TTAA	1 cut(s)	288
Sau3AI	GATC	3 cut(s)	129, 177, 245
Sau96I	GGNCC	3 cut(s)	56, 99, 170
SchI	GAGTC	1 cut(s)	442
SduI	GDGCHC	1 cut(s)	234
SetI	ASST	5 cut(s)	24, 151, 221, 478, 518
SfcI	CTRYAG	1 cut(s)	559
SinI	GGWCC	1 cut(s)	56
SmiMI	CAYNNNNRTG	3 cut(s)	197, 321, 414
SmlI	CTYRAG	1 cut(s)	517
SmoI	CTYRAG	1 cut(s)	517
Sse9I	AATT	4 cut(s)	77, 239, 307, 591
SsiI	CCGC	1 cut(s)	414
SspI	AATATT	1 cut(s)	263
SspMI	CTAG	3 cut(s)	293, 479, 497
TaaI	ACNGT	2 cut(s)	196, 374
TaiI	ACGT	1 cut(s)	221
TaqI	TCGA	1 cut(s)	555
TasI	AATT	4 cut(s)	77, 239, 307, 591
TatI	WGTACW	2 cut(s)	374, 546
TfiI	GAWTC	2 cut(s)	341, 448
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	3 cut(s)	199, 397, 549
TspDTI	ATGAA	4 cut(s)	75, 237, 333, 605
TspRI	CASTG	3 cut(s)	199, 397, 549
VpaK11BI	GGWCC	1 cut(s)	56
XapI	RAATTY	1 cut(s)	239
XbaI	TCTAGA	2 cut(s)	478, 496
XspI	CTAG	3 cut(s)	293, 479, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.