Rh3CG369900

Plant protein of unknown function (DUF936)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0005561
Physical Location & Seq
Forward (+)
47144450 .. 47144890
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG369900.1

Sequence Viewer

Length: 441 bp
ATGAACTTCGCCACCAAAGTCACCGGCGACCACCGCTTTGCCCTGCTCCAAGTCATCTGCATAGTCCCCGCCCTTGCCGACTCCGACGACCTCTGGCCCAACCAAGGATTCTACGTCCAGCTCTCCGACTCCCTCAACTCCACCTACGTCTCCCTCTCCGAGAAAGACACCGATCTCAACCTCGCCAACTGCCTCCAGCTAGGCCAGTTCATCTACGTCGACCGCTTCGATTTCGACTCTCCGGTGCCGCGCGTCGCCGGAATCAGCCCCATCGCTGGCCGCCACCCCTTCGTCGGTTTGCCGGAGCATCTGGTGGCGGATTTCTCCAAGGAGAAGATTGTCTGTTGGGGGAGTGAAGGACTCTGCTGCAAGGAAGAAAATGGCTACAATTGTTGCCAAAATTTCGAAGATTTCGGATTCAATCGGGATGTGCCGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF936

Protein Analysis

146

Amino Acids

16.32

Weight (kDa)

4.47

Isoelectric Point (pI)

33.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF936 PF06075 1 - 106 2.1e-42 Plant protein of unknown function (DUF936)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 244
AccI GTMKAC 1 cut(s) 219
AccII CGCG 2 cut(s) 250, 252
AciI CCGC 6 cut(s) 34, 69, 223, 248, 280, 317
AcoI YGGCCR 1 cut(s) 277
AcsI RAATTY 1 cut(s) 400
AfiI CCNNNNNNNGG 3 cut(s) 104, 275, 293
AgsI TTSAA 1 cut(s) 421
AjuI GAANNNNNNNTTGG 2 cut(s) 92, 124
AluBI AGCT 2 cut(s) 121, 199
AluI AGCT 2 cut(s) 121, 199
Alw26I GTCTC 1 cut(s) 154
AoxI GGCC 3 cut(s) 95, 202, 277
ApeKI GCWGC 1 cut(s) 366
ApoI RAATTY 1 cut(s) 400
ArsI GACNNNNNNTTYG 2 cut(s) 20, 52
AspLEI GCGC 1 cut(s) 252
AspS9I GGNCC 1 cut(s) 96
AsuHPI GGTGA 1 cut(s) 13
AsuII TTCGAA 1 cut(s) 405
BanI GGYRCC 1 cut(s) 244
BbvI GCAGC 1 cut(s) 353
BccI CCATC 1 cut(s) 278
BcoDI GTCTC 1 cut(s) 154
BfaI CTAG 1 cut(s) 200
BisI GCNGC 3 cut(s) 248, 280, 367
BlsI GCNGC 3 cut(s) 249, 281, 368
BmgT120I GGNCC 1 cut(s) 96
BmiI GGNNCC 1 cut(s) 246
BmsI GCATC 1 cut(s) 316
BpmI CTGGAG 1 cut(s) 179
Bpu14I TTCGAA 1 cut(s) 405
BsaJI CCNNGG 2 cut(s) 103, 327
BsaWI WCCGGW 1 cut(s) 241
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 275, 293
Bse118I RCCGGY 1 cut(s) 23
Bse1I ACTGG 1 cut(s) 205
BseDI CCNNGG 2 cut(s) 103, 327
BseGI GGATG 1 cut(s) 433
BseLI CCNNNNNNNGG 3 cut(s) 104, 275, 293
BseNI ACTGG 1 cut(s) 205
BseXI GCAGC 1 cut(s) 353
Bsh1236I CGCG 2 cut(s) 250, 252
Bsh1285I CGRYCG 1 cut(s) 223
BshFI GGCC 3 cut(s) 97, 204, 279
BshNI GGYRCC 1 cut(s) 244
BsiEI CGRYCG 1 cut(s) 223
BsiSI CCGG 5 cut(s) 24, 242, 258, 302, 434
BslFI GGGAC 1 cut(s) 50
BslI CCNNNNNNNGG 3 cut(s) 104, 275, 293
BsmAI GTCTC 1 cut(s) 154
BsmBI CGTCTC 1 cut(s) 154
BsmFI GGGAC 1 cut(s) 50
BsnI GGCC 3 cut(s) 97, 204, 279
Bsp119I TTCGAA 1 cut(s) 405
Bsp143I GATC 1 cut(s) 172
BspACI CCGC 6 cut(s) 34, 69, 223, 248, 280, 317
BspANI GGCC 3 cut(s) 97, 204, 279
BspFNI CGCG 2 cut(s) 250, 252
BspLI GGNNCC 1 cut(s) 246
BspT104I TTCGAA 1 cut(s) 405
BspT107I GGYRCC 1 cut(s) 244
BsrFI RCCGGY 1 cut(s) 23
BsrI ACTGG 1 cut(s) 205
BssAI RCCGGY 1 cut(s) 23
BssECI CCNNGG 2 cut(s) 103, 327
BssMI GATC 1 cut(s) 172
BssT1I CCWWGG 2 cut(s) 103, 327
BstBI TTCGAA 1 cut(s) 405
BstC8I GCNNGC 1 cut(s) 277
BstF5I GGATG 1 cut(s) 433
BstFNI CGCG 2 cut(s) 250, 252
BstHHI GCGC 1 cut(s) 252
BstKTI GATC 1 cut(s) 175
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 1 cut(s) 172
BstMCI CGRYCG 1 cut(s) 223
BstMWI GCNNNNNNNGC 1 cut(s) 33
BstUI CGCG 2 cut(s) 250, 252
BstV1I GCAGC 1 cut(s) 353
BsuRI GGCC 3 cut(s) 97, 204, 279
BtgZI GCGATG 1 cut(s) 256
BtsCI GGATG 1 cut(s) 433
Cac8I GCNNGC 1 cut(s) 277
CfoI GCGC 1 cut(s) 252
Cfr10I RCCGGY 1 cut(s) 23
Cfr13I GGNCC 1 cut(s) 96
CseI GACGC 1 cut(s) 241
CviJI RGCY 7 cut(s) 97, 121, 199, 204, 267, 279, 384
CviKI_1 RGCY 7 cut(s) 97, 121, 199, 204, 267, 279, 384
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
EaeI YGGCCR 1 cut(s) 277
EciI GGCGGA 1 cut(s) 332
Eco130I CCWWGG 2 cut(s) 103, 327
EcoT14I CCWWGG 2 cut(s) 103, 327
ErhI CCWWGG 2 cut(s) 103, 327
Esp3I CGTCTC 1 cut(s) 154
FaiI YATR 1 cut(s) 62
FaqI GGGAC 1 cut(s) 50
FauI CCCGC 1 cut(s) 76
FblI GTMKAC 1 cut(s) 219
Fnu4HI GCNGC 3 cut(s) 248, 280, 367
Fsp4HI GCNGC 3 cut(s) 248, 280, 367
FspBI CTAG 1 cut(s) 200
GlaI GCGC 1 cut(s) 251
GluI GCNGC 3 cut(s) 248, 280, 367
GsuI CTGGAG 1 cut(s) 179
HaeIII GGCC 3 cut(s) 97, 204, 279
HapII CCGG 5 cut(s) 24, 242, 258, 302, 434
HgaI GACGC 1 cut(s) 241
HhaI GCGC 1 cut(s) 252
Hin6I GCGC 1 cut(s) 250
HinP1I GCGC 1 cut(s) 250
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HinfI GANTC 7 cut(s) 80, 108, 128, 236, 261, 360, 417
HpaII CCGG 5 cut(s) 24, 242, 258, 302, 434
HphI GGTGA 1 cut(s) 13
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 4 cut(s) 85, 127, 160, 416
Hpy188III TCNNGA 1 cut(s) 425
Hpy8I GTNNAC 1 cut(s) 220
Hpy99I CGWCG 4 cut(s) 89, 221, 257, 296
HpyAV CCTTC 2 cut(s) 298, 350
HpyCH4IV ACGT 3 cut(s) 114, 147, 216
HpyCH4V TGCA 2 cut(s) 60, 369
HpyF10VI GCNNNNNNNGC 1 cut(s) 33
HpySE526I ACGT 3 cut(s) 114, 147, 216
HspAI GCGC 1 cut(s) 250
Kzo9I GATC 1 cut(s) 172
LmnI GCTCC 2 cut(s) 51, 304
Lsp1109I GCAGC 1 cut(s) 353
LweI GCATC 1 cut(s) 316
MaeI CTAG 1 cut(s) 200
MaeII ACGT 3 cut(s) 114, 147, 216
MaeIII GTNAC 1 cut(s) 19
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 3 cut(s) 346, 386, 419
MfeI CAATTG 1 cut(s) 388
MluCI AATT 2 cut(s) 388, 400
MlyI GAGTC 4 cut(s) 74, 122, 230, 354
MmeI TCCRAC 2 cut(s) 108, 150
MnlI CCTC 5 cut(s) 101, 143, 164, 191, 203
MspI CCGG 5 cut(s) 24, 242, 258, 302, 434
MunI CAATTG 1 cut(s) 388
MvnI CGCG 2 cut(s) 250, 252
MwoI GCNNNNNNNGC 1 cut(s) 33
NdeII GATC 1 cut(s) 172
NlaIV GGNNCC 1 cut(s) 246
NmuCI GTSAC 1 cut(s) 19
NspV TTCGAA 1 cut(s) 405
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PfeI GAWTC 3 cut(s) 108, 261, 417
PkrI GCNGC 3 cut(s) 249, 281, 368
PleI GAGTC 4 cut(s) 74, 122, 230, 354
PpsI GAGTC 4 cut(s) 74, 122, 230, 354
PspN4I GGNNCC 1 cut(s) 246
PspPI GGNCC 1 cut(s) 96
SalI GTCGAC 1 cut(s) 218
SatI GCNGC 3 cut(s) 248, 280, 367
Sau3AI GATC 1 cut(s) 172
Sau96I GGNCC 1 cut(s) 96
SchI GAGTC 4 cut(s) 74, 122, 230, 354
SetI ASST 8 cut(s) 93, 117, 123, 146, 150, 183, 201, 219
SfaNI GCATC 1 cut(s) 316
SfuI TTCGAA 1 cut(s) 405
SgrAI CRCCGGYG 1 cut(s) 23
Sse9I AATT 2 cut(s) 388, 400
SsiI CCGC 6 cut(s) 34, 69, 223, 248, 280, 317
SspMI CTAG 1 cut(s) 200
StyI CCWWGG 2 cut(s) 103, 327
TaiI ACGT 3 cut(s) 117, 150, 219
TaqI TCGA 4 cut(s) 219, 228, 234, 405
TasI AATT 2 cut(s) 388, 400
TauI GCSGC 2 cut(s) 250, 282
TfiI GAWTC 3 cut(s) 108, 261, 417
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 366
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 2 cut(s) 17, 199
XapI RAATTY 1 cut(s) 400
XmiI GTMKAC 1 cut(s) 219
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.