Rmu_sc0001231.1_g000024

Plant protein of unknown function (DUF936)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001231.1
OG0005561
Physical Location & Seq
Forward (+)
94285 .. 94590
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001231.1_g000024.1.cds

Sequence Viewer

Length: 306 bp
atggtgtcacccactcccggaatccttctccggctcctccagtccatgaactccgccaccaaagtcactagcgaccaccgctctgccctgctccaagtcatcggcatagtccccgccctcgccgactccgacgacctctggcccaaccaaggcttctacgtccagctctctgactccctcaactccacctacgtctccctctccgagaaagacaccgatctcatcctctccaacagcctccagctcggccagttagtctgcgtcgaccgcttcgatttcaactttctggtgcctcgcgtggcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF936

Protein Analysis

101

Amino Acids

11.08

Weight (kDa)

4.48

Isoelectric Point (pI)

42.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 289
AccBSI CCGCTC 1 cut(s) 81
AccI GTMKAC 1 cut(s) 264
AccII CGCG 1 cut(s) 297
AciI CCGC 4 cut(s) 54, 79, 114, 268
AcoI YGGCCR 1 cut(s) 247
AfiI CCNNNNNNNGG 2 cut(s) 17, 149
AgsI TTSAA 1 cut(s) 280
AjuI GAANNNNNNNTTGG 2 cut(s) 137, 169
AluBI AGCT 2 cut(s) 166, 244
AluI AGCT 2 cut(s) 166, 244
Alw26I GTCTC 1 cut(s) 199
AoxI GGCC 3 cut(s) 140, 247, 300
AspS9I GGNCC 1 cut(s) 141
AsuC2I CCSGG 1 cut(s) 18
BanI GGYRCC 1 cut(s) 289
BcnI CCSGG 1 cut(s) 18
BcoDI GTCTC 1 cut(s) 199
BfaI CTAG 1 cut(s) 69
Bme1390I CCNGG 1 cut(s) 18
BmgT120I GGNCC 1 cut(s) 141
BmiI GGNNCC 2 cut(s) 35, 291
BmrFI CCNGG 1 cut(s) 18
BpmI CTGGAG 2 cut(s) 23, 224
BpuMI CCSGG 1 cut(s) 18
BsaJI CCNNGG 1 cut(s) 148
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 149
Bse1I ACTGG 2 cut(s) 40, 250
BseDI CCNNGG 1 cut(s) 148
BseGI GGATG 1 cut(s) 222
BseLI CCNNNNNNNGG 2 cut(s) 17, 149
BseNI ACTGG 2 cut(s) 40, 250
BseRI GAGGAG 1 cut(s) 26
Bsh1236I CGCG 1 cut(s) 297
Bsh1285I CGRYCG 1 cut(s) 268
BshFI GGCC 3 cut(s) 142, 249, 302
BshNI GGYRCC 1 cut(s) 289
BsiEI CGRYCG 1 cut(s) 268
BsiSI CCGG 2 cut(s) 18, 31
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 2 cut(s) 17, 149
BsmAI GTCTC 1 cut(s) 199
BsmBI CGTCTC 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 95
BsnI GGCC 3 cut(s) 142, 249, 302
Bsp143I GATC 1 cut(s) 217
BspACI CCGC 4 cut(s) 54, 79, 114, 268
BspANI GGCC 3 cut(s) 142, 249, 302
BspFNI CGCG 1 cut(s) 297
BspLI GGNNCC 2 cut(s) 35, 291
BspT107I GGYRCC 1 cut(s) 289
BsrBI CCGCTC 1 cut(s) 81
BsrI ACTGG 2 cut(s) 40, 250
BssECI CCNNGG 1 cut(s) 148
BssMI GATC 1 cut(s) 217
BssT1I CCWWGG 1 cut(s) 148
BstF5I GGATG 1 cut(s) 222
BstFNI CGCG 1 cut(s) 297
BstKTI GATC 1 cut(s) 220
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 1 cut(s) 217
BstMCI CGRYCG 1 cut(s) 268
BstMWI GCNNNNNNNGC 2 cut(s) 78, 267
BstSCI CCNGG 1 cut(s) 16
BstUI CGCG 1 cut(s) 297
BsuRI GGCC 3 cut(s) 142, 249, 302
BtsCI GGATG 1 cut(s) 222
Cfr13I GGNCC 1 cut(s) 141
CseI GACGC 1 cut(s) 250
CviAII CATG 1 cut(s) 46
CviJI RGCY 8 cut(s) 34, 142, 153, 166, 237, 244, 249, 302
CviKI_1 RGCY 8 cut(s) 34, 142, 153, 166, 237, 244, 249, 302
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
EaeI YGGCCR 1 cut(s) 247
EciI GGCGGA 1 cut(s) 43
Eco130I CCWWGG 1 cut(s) 148
EcoT14I CCWWGG 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 148
Esp3I CGTCTC 1 cut(s) 199
FaeI CATG 1 cut(s) 49
FaiI YATR 2 cut(s) 47, 107
FaqI GGGAC 1 cut(s) 95
FatI CATG 1 cut(s) 45
FauI CCCGC 1 cut(s) 121
FblI GTMKAC 1 cut(s) 264
FokI GGATG 1 cut(s) 209
FspBI CTAG 1 cut(s) 69
GsuI CTGGAG 2 cut(s) 23, 224
HaeIII GGCC 3 cut(s) 142, 249, 302
HapII CCGG 2 cut(s) 18, 31
HgaI GACGC 1 cut(s) 250
Hin1II CATG 1 cut(s) 49
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HinfI GANTC 3 cut(s) 21, 125, 173
HpaII CCGG 2 cut(s) 18, 31
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 3 cut(s) 130, 172, 205
Hpy8I GTNNAC 1 cut(s) 265
Hpy99I CGWCG 2 cut(s) 134, 266
HpyAV CCTTC 1 cut(s) 35
HpyCH4IV ACGT 2 cut(s) 159, 192
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 267
HpySE526I ACGT 2 cut(s) 159, 192
Hsp92II CATG 1 cut(s) 49
Kzo9I GATC 1 cut(s) 217
LmnI GCTCC 2 cut(s) 39, 96
LpnPI CCDG 9 cut(s) 31, 44, 53, 101, 124, 176, 254, 263, 272
MaeI CTAG 1 cut(s) 69
MaeII ACGT 2 cut(s) 159, 192
MaeIII GTNAC 2 cut(s) 6, 64
MalI GATC 1 cut(s) 219
MbiI CCGCTC 1 cut(s) 81
MboI GATC 1 cut(s) 217
MlyI GAGTC 2 cut(s) 119, 167
MmeI TCCRAC 2 cut(s) 153, 255
MnlI CCTC 8 cut(s) 47, 128, 146, 188, 209, 236, 248, 303
MspI CCGG 2 cut(s) 18, 31
MspR9I CCNGG 1 cut(s) 18
MvnI CGCG 1 cut(s) 297
MwoI GCNNNNNNNGC 2 cut(s) 78, 267
NciI CCSGG 1 cut(s) 18
NdeII GATC 1 cut(s) 217
NlaIII CATG 1 cut(s) 49
NlaIV GGNNCC 2 cut(s) 35, 291
NmeAIII GCCGAG 1 cut(s) 225
NmuCI GTSAC 2 cut(s) 6, 64
PcsI WCGNNNNNNNCGW 2 cut(s) 126, 270
PfeI GAWTC 1 cut(s) 21
PfoI TCCNGGA 1 cut(s) 16
PleI GAGTC 2 cut(s) 119, 167
PpsI GAGTC 2 cut(s) 119, 167
PspN4I GGNNCC 2 cut(s) 35, 291
PspPI GGNCC 1 cut(s) 141
SalI GTCGAC 1 cut(s) 263
Sau3AI GATC 1 cut(s) 217
Sau96I GGNCC 1 cut(s) 141
SchI GAGTC 2 cut(s) 119, 167
ScrFI CCNGG 1 cut(s) 18
SetI ASST 6 cut(s) 138, 162, 168, 191, 195, 246
SsiI CCGC 4 cut(s) 54, 79, 114, 268
SspMI CTAG 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 16
StyI CCWWGG 1 cut(s) 148
TaiI ACGT 2 cut(s) 162, 195
TaqI TCGA 2 cut(s) 264, 273
TfiI GAWTC 1 cut(s) 21
TseFI GTSAC 2 cut(s) 6, 64
Tsp45I GTSAC 2 cut(s) 6, 64
TspDTI ATGAA 1 cut(s) 62
XmiI GTMKAC 1 cut(s) 264
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.