Rh5DG200900

Plant protein of unknown function (DUF936)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0005561
Physical Location & Seq
Reverse (-)
22311942 .. 22312535
594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG200900.1

Sequence Viewer

Length: 450 bp
ATGTCCTCCACATTCCAAATCCCAATCCTCTCTCTTTCTGATTCTCTCACCCCCAATGGCGTCACCCACTCCCGGCTCCTCCAGTCCATGAACTCCGCCACCAAAGTCACCGGCGACCACTGCTCTGCCCTGCTCCAAGTCATCGGCATAGTCCCCGCCCTCGCCGACTCAGACGACCTCTGGACCAACCAAGGCTTCTACGTCCAGCTCTCCGACTCCCTCAACTCCACCTACGTCTCCCTCTCCGAGAAAGACACCGATCTCATCCTCGCCAACTGCCTCCAGTGTCCAGCTCGGCCAGTTCGTCTACGTCGACTGCTTCGATTTCGACTCTCCGGTGCCACGCGTCGCCGGAATCAGCCCCATCGTTGGCCGCCACCCCTTTGTCAGTTCGCCGGAGCCTCTGGTGGCGAATTTCTCCAGGGAGAAGATTGTCTGTTGGGGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF936

Protein Analysis

149

Amino Acids

16.34

Weight (kDa)

6.81

Isoelectric Point (pI)

60.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF936 PF06075 24 - 96 4.6e-28 Plant protein of unknown function (DUF936)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 338
AccI GTMKAC 2 cut(s) 307, 313
AccII CGCG 1 cut(s) 346
AciI CCGC 3 cut(s) 96, 156, 374
AcoI YGGCCR 2 cut(s) 296, 371
AcsI RAATTY 1 cut(s) 413
AcyI GRCGYC 1 cut(s) 60
AfiI CCNNNNNNNGG 2 cut(s) 72, 369
AflIII ACRYGT 1 cut(s) 344
AjnI CCWGG 1 cut(s) 420
AjuI GAANNNNNNNTTGG 2 cut(s) 179, 211
AluBI AGCT 2 cut(s) 208, 293
AluI AGCT 2 cut(s) 208, 293
Alw26I GTCTC 1 cut(s) 241
AoxI GGCC 2 cut(s) 296, 371
ApoI RAATTY 1 cut(s) 413
AspS9I GGNCC 1 cut(s) 183
AsuC2I CCSGG 1 cut(s) 73
AsuHPI GGTGA 3 cut(s) 40, 55, 100
AvaII GGWCC 1 cut(s) 183
BanI GGYRCC 1 cut(s) 338
BccI CCATC 1 cut(s) 372
BciT130I CCWGG 1 cut(s) 422
BcnI CCSGG 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 241
BisI GCNGC 1 cut(s) 374
BlsI GCNGC 1 cut(s) 375
Bme1390I CCNGG 2 cut(s) 73, 422
Bme18I GGWCC 1 cut(s) 183
BmgT120I GGNCC 1 cut(s) 183
BmiI GGNNCC 3 cut(s) 77, 340, 400
BmrFI CCNGG 2 cut(s) 73, 422
BpmI CTGGAG 3 cut(s) 65, 266, 404
BpuMI CCSGG 1 cut(s) 73
BsaHI GRCGYC 1 cut(s) 60
BsaJI CCNNGG 2 cut(s) 190, 421
BsaWI WCCGGW 1 cut(s) 335
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 369
Bse118I RCCGGY 1 cut(s) 110
Bse1I ACTGG 3 cut(s) 82, 283, 299
BseBI CCWGG 1 cut(s) 422
BseDI CCNNGG 2 cut(s) 190, 421
BseGI GGATG 1 cut(s) 264
BseLI CCNNNNNNNGG 2 cut(s) 72, 369
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 3 cut(s) 82, 283, 299
BseRI GAGGAG 1 cut(s) 68
Bsh1236I CGCG 1 cut(s) 346
BshFI GGCC 2 cut(s) 298, 373
BshNI GGYRCC 1 cut(s) 338
BsiSI CCGG 5 cut(s) 73, 111, 336, 352, 396
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 2 cut(s) 72, 369
BsmAI GTCTC 1 cut(s) 241
BsmBI CGTCTC 1 cut(s) 241
BsmFI GGGAC 1 cut(s) 137
BsnI GGCC 2 cut(s) 298, 373
Bsp143I GATC 1 cut(s) 259
BspACI CCGC 3 cut(s) 96, 156, 374
BspANI GGCC 2 cut(s) 298, 373
BspCNI CTCAG 1 cut(s) 182
BspFNI CGCG 1 cut(s) 346
BspLI GGNNCC 3 cut(s) 77, 340, 400
BspT107I GGYRCC 1 cut(s) 338
BsrFI RCCGGY 1 cut(s) 110
BsrI ACTGG 3 cut(s) 82, 283, 299
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 2 cut(s) 190, 421
BssMI GATC 1 cut(s) 259
BssNI GRCGYC 1 cut(s) 60
BssT1I CCWWGG 1 cut(s) 190
Bst2UI CCWGG 1 cut(s) 422
BstACI GRCGYC 1 cut(s) 60
BstDEI CTNAG 1 cut(s) 169
BstF5I GGATG 1 cut(s) 264
BstFNI CGCG 1 cut(s) 346
BstKTI GATC 1 cut(s) 262
BstMAI GTCTC 1 cut(s) 241
BstMBI GATC 1 cut(s) 259
BstMWI GCNNNNNNNGC 1 cut(s) 120
BstNI CCWGG 1 cut(s) 422
BstSCI CCNGG 2 cut(s) 71, 420
BstUI CGCG 1 cut(s) 346
BsuRI GGCC 2 cut(s) 298, 373
BtsCI GGATG 1 cut(s) 264
BtsI GCAGTG 1 cut(s) 118
BtsIMutI CAGTG 2 cut(s) 118, 290
Cfr10I RCCGGY 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 183
CseI GACGC 2 cut(s) 49, 335
CviAII CATG 1 cut(s) 88
CviJI RGCY 8 cut(s) 76, 195, 208, 293, 298, 361, 373, 401
CviKI_1 RGCY 8 cut(s) 76, 195, 208, 293, 298, 361, 373, 401
DdeI CTNAG 1 cut(s) 169
DpnI GATC 1 cut(s) 261
DpnII GATC 1 cut(s) 259
EaeI YGGCCR 2 cut(s) 296, 371
EciI GGCGGA 1 cut(s) 85
Eco130I CCWWGG 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 420
EcoT14I CCWWGG 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 190
Esp3I CGTCTC 1 cut(s) 241
FaeI CATG 1 cut(s) 91
FaiI YATR 2 cut(s) 89, 149
FaqI GGGAC 1 cut(s) 137
FatI CATG 1 cut(s) 87
FauI CCCGC 1 cut(s) 163
FblI GTMKAC 2 cut(s) 307, 313
Fnu4HI GCNGC 1 cut(s) 374
FokI GGATG 1 cut(s) 251
Fsp4HI GCNGC 1 cut(s) 374
GluI GCNGC 1 cut(s) 374
GsuI CTGGAG 3 cut(s) 65, 266, 404
HaeIII GGCC 2 cut(s) 298, 373
HapII CCGG 5 cut(s) 73, 111, 336, 352, 396
HgaI GACGC 2 cut(s) 49, 335
Hin1I GRCGYC 1 cut(s) 60
Hin1II CATG 1 cut(s) 91
HincII GTYRAC 1 cut(s) 314
HindII GTYRAC 1 cut(s) 314
HinfI GANTC 5 cut(s) 41, 167, 215, 330, 355
HpaII CCGG 5 cut(s) 73, 111, 336, 352, 396
HphI GGTGA 3 cut(s) 40, 55, 100
Hpy166II GTNNAC 2 cut(s) 308, 314
Hpy188I TCNGA 4 cut(s) 40, 172, 214, 247
Hpy188III TCNNGA 1 cut(s) 181
Hpy8I GTNNAC 2 cut(s) 308, 314
Hpy99I CGWCG 2 cut(s) 315, 351
HpyCH4IV ACGT 3 cut(s) 201, 234, 310
HpyF10VI GCNNNNNNNGC 1 cut(s) 120
HpyF3I CTNAG 1 cut(s) 169
HpySE526I ACGT 3 cut(s) 201, 234, 310
Hsp92I GRCGYC 1 cut(s) 60
Hsp92II CATG 1 cut(s) 91
Kzo9I GATC 1 cut(s) 259
LmnI GCTCC 3 cut(s) 81, 138, 398
MaeII ACGT 3 cut(s) 201, 234, 310
MaeIII GTNAC 2 cut(s) 61, 106
MalI GATC 1 cut(s) 261
MboI GATC 1 cut(s) 259
MboII GAAGA 1 cut(s) 440
MluCI AATT 1 cut(s) 413
MluI ACGCGT 1 cut(s) 344
MlyI GAGTC 3 cut(s) 161, 209, 324
MmeI TCCRAC 1 cut(s) 237
MspI CCGG 5 cut(s) 73, 111, 336, 352, 396
MspR9I CCNGG 2 cut(s) 73, 422
MvaI CCWGG 1 cut(s) 422
MvnI CGCG 1 cut(s) 346
MwoI GCNNNNNNNGC 1 cut(s) 120
NciI CCSGG 1 cut(s) 73
NdeII GATC 1 cut(s) 259
NlaIII CATG 1 cut(s) 91
NlaIV GGNNCC 3 cut(s) 77, 340, 400
NmeAIII GCCGAG 1 cut(s) 274
NmuCI GTSAC 2 cut(s) 61, 106
PcsI WCGNNNNNNNCGW 3 cut(s) 301, 310, 319
PfeI GAWTC 2 cut(s) 41, 355
PkrI GCNGC 1 cut(s) 375
PleI GAGTC 3 cut(s) 161, 209, 324
PpsI GAGTC 3 cut(s) 161, 209, 324
Psp6I CCWGG 1 cut(s) 420
PspGI CCWGG 1 cut(s) 420
PspN4I GGNNCC 3 cut(s) 77, 340, 400
PspPI GGNCC 1 cut(s) 183
SalI GTCGAC 1 cut(s) 312
SatI GCNGC 1 cut(s) 374
Sau3AI GATC 1 cut(s) 259
Sau96I GGNCC 1 cut(s) 183
SchI GAGTC 3 cut(s) 161, 209, 324
ScrFI CCNGG 2 cut(s) 73, 422
SetI ASST 7 cut(s) 180, 204, 210, 233, 237, 295, 313
SgrAI CRCCGGYG 1 cut(s) 110
SinI GGWCC 1 cut(s) 183
Sse9I AATT 1 cut(s) 413
SsiI CCGC 3 cut(s) 96, 156, 374
StyD4I CCNGG 2 cut(s) 71, 420
StyI CCWWGG 1 cut(s) 190
TaiI ACGT 3 cut(s) 204, 237, 313
TaqI TCGA 3 cut(s) 313, 322, 328
TasI AATT 1 cut(s) 413
TauI GCSGC 1 cut(s) 376
TfiI GAWTC 2 cut(s) 41, 355
TscAI CASTG 2 cut(s) 125, 290
TseFI GTSAC 2 cut(s) 61, 106
Tsp45I GTSAC 2 cut(s) 61, 106
TspDTI ATGAA 1 cut(s) 104
TspRI CASTG 2 cut(s) 125, 290
VpaK11BI GGWCC 1 cut(s) 183
XapI RAATTY 1 cut(s) 413
XmiI GTMKAC 2 cut(s) 307, 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.