Rroxscaffold_2G00113100

Plant protein of unknown function (DUF936)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005561
Physical Location & Seq
Reverse (-)
38598801 .. 38601136
2336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00113100.1

Sequence Viewer

Length: 237 bp
ATGGCCGGTGAAATCAGCGAGACAAGGCGGCTTCGGTGGTCGGGAATAGGATGTTCTGTCATCGGCATAGTCCCCACCCTCGCCGACTCCGACGACCTCCGGCCCAACCAAGGCTTCTATGTCCGCTCTCTCCAACTCCTCGACTCCACCTACGTCTCCCTCTCCGAGAAAGACACCGATCTCATCCTCGCCAACCTCCCGGCTCGGCCGGTTCGTCTACGTCGACTTTTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF936

Protein Analysis

78

Amino Acids

8.75

Weight (kDa)

7.94

Isoelectric Point (pI)

76.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF936 PF06075 19 - 65 1.3e-11 Plant protein of unknown function (DUF936)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 126
AccI GTMKAC 2 cut(s) 217, 223
AciI CCGC 2 cut(s) 28, 124
AcoI YGGCCR 2 cut(s) 3, 206
AfiI CCNNNNNNNGG 1 cut(s) 110
AjuI GAANNNNNNNTTGG 2 cut(s) 98, 130
Alw26I GTCTC 2 cut(s) 14, 160
AoxI GGCC 3 cut(s) 3, 101, 206
ArsI GACNNNNNNTTYG 1 cut(s) 216
AspS9I GGNCC 1 cut(s) 102
AsuC2I CCSGG 1 cut(s) 200
AsuHPI GGTGA 1 cut(s) 20
BcnI CCSGG 1 cut(s) 200
BcoDI GTCTC 2 cut(s) 14, 160
BisI GCNGC 1 cut(s) 29
BlsI GCNGC 1 cut(s) 30
Bme1390I CCNGG 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 200
BpuMI CCSGG 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 109
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse118I RCCGGY 2 cut(s) 5, 208
BseDI CCNNGG 1 cut(s) 109
BseGI GGATG 2 cut(s) 56, 183
BseLI CCNNNNNNNGG 1 cut(s) 110
BseRI GAGGAG 1 cut(s) 128
BseX3I CGGCCG 1 cut(s) 206
Bsh1285I CGRYCG 1 cut(s) 209
BshFI GGCC 3 cut(s) 5, 103, 208
BsiEI CGRYCG 1 cut(s) 209
BsiSI CCGG 4 cut(s) 6, 100, 200, 209
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 2 cut(s) 14, 160
BsmBI CGTCTC 1 cut(s) 160
BsmFI GGGAC 1 cut(s) 56
BsnI GGCC 3 cut(s) 5, 103, 208
Bsp143I GATC 1 cut(s) 178
BspACI CCGC 2 cut(s) 28, 124
BspANI GGCC 3 cut(s) 5, 103, 208
BsrBI CCGCTC 1 cut(s) 126
BsrFI RCCGGY 2 cut(s) 5, 208
BssAI RCCGGY 2 cut(s) 5, 208
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 1 cut(s) 178
BssT1I CCWWGG 1 cut(s) 109
BstF5I GGATG 2 cut(s) 56, 183
BstKTI GATC 1 cut(s) 181
BstMAI GTCTC 2 cut(s) 14, 160
BstMBI GATC 1 cut(s) 178
BstMCI CGRYCG 1 cut(s) 209
BstSCI CCNGG 1 cut(s) 198
BstZI CGGCCG 1 cut(s) 206
BsuRI GGCC 3 cut(s) 5, 103, 208
BtsCI GGATG 2 cut(s) 56, 183
Cfr10I RCCGGY 2 cut(s) 5, 208
Cfr13I GGNCC 1 cut(s) 102
CviJI RGCY 6 cut(s) 5, 31, 103, 114, 203, 208
CviKI_1 RGCY 6 cut(s) 5, 31, 103, 114, 203, 208
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
EaeI YGGCCR 2 cut(s) 3, 206
EagI CGGCCG 1 cut(s) 206
EclXI CGGCCG 1 cut(s) 206
Eco130I CCWWGG 1 cut(s) 109
Eco52I CGGCCG 1 cut(s) 206
EcoT14I CCWWGG 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 109
Esp3I CGTCTC 1 cut(s) 160
FaiI YATR 2 cut(s) 68, 120
FaqI GGGAC 1 cut(s) 56
FblI GTMKAC 2 cut(s) 217, 223
Fnu4HI GCNGC 1 cut(s) 29
FokI GGATG 2 cut(s) 63, 170
Fsp4HI GCNGC 1 cut(s) 29
GluI GCNGC 1 cut(s) 29
HaeIII GGCC 3 cut(s) 5, 103, 208
HapII CCGG 4 cut(s) 6, 100, 200, 209
HincII GTYRAC 1 cut(s) 224
HindII GTYRAC 1 cut(s) 224
HinfI GANTC 2 cut(s) 86, 143
HpaII CCGG 4 cut(s) 6, 100, 200, 209
HphI GGTGA 1 cut(s) 20
Hpy166II GTNNAC 2 cut(s) 218, 224
Hpy188I TCNGA 2 cut(s) 91, 166
Hpy188III TCNNGA 1 cut(s) 42
Hpy8I GTNNAC 2 cut(s) 218, 224
Hpy99I CGWCG 2 cut(s) 95, 225
HpyCH4IV ACGT 2 cut(s) 153, 220
HpySE526I ACGT 2 cut(s) 153, 220
Kzo9I GATC 1 cut(s) 178
LpnPI CCDG 4 cut(s) 19, 113, 213, 222
MaeII ACGT 2 cut(s) 153, 220
MalI GATC 1 cut(s) 180
MbiI CCGCTC 1 cut(s) 126
MboI GATC 1 cut(s) 178
MlyI GAGTC 2 cut(s) 80, 137
MmeI TCCRAC 2 cut(s) 114, 157
MnlI CCTC 6 cut(s) 89, 107, 149, 170, 197, 206
MspI CCGG 4 cut(s) 6, 100, 200, 209
MspR9I CCNGG 1 cut(s) 200
NciI CCSGG 1 cut(s) 200
NdeII GATC 1 cut(s) 178
NmeAIII GCCGAG 1 cut(s) 184
PcsI WCGNNNNNNNCGW 3 cut(s) 87, 211, 220
PkrI GCNGC 1 cut(s) 30
PleI GAGTC 2 cut(s) 80, 137
PpsI GAGTC 2 cut(s) 80, 137
PspPI GGNCC 1 cut(s) 102
SalI GTCGAC 1 cut(s) 222
SatI GCNGC 1 cut(s) 29
Sau3AI GATC 1 cut(s) 178
Sau96I GGNCC 1 cut(s) 102
SchI GAGTC 2 cut(s) 80, 137
ScrFI CCNGG 1 cut(s) 200
SetI ASST 5 cut(s) 99, 152, 156, 198, 223
SsiI CCGC 2 cut(s) 28, 124
StyD4I CCNGG 1 cut(s) 198
StyI CCWWGG 1 cut(s) 109
TaiI ACGT 2 cut(s) 156, 223
TaqI TCGA 2 cut(s) 141, 223
TauI GCSGC 1 cut(s) 31
XmiI GTMKAC 2 cut(s) 217, 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.