Rh4BG266200

Plant protein of unknown function (DUF936)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0005561
Physical Location & Seq
Forward (+)
44046336 .. 44046752
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG266200.1

Sequence Viewer

Length: 417 bp
ATGAACTCCGCCATCAAAGTCACCGGCGACCACCACTCTGCCCTGCTCCAAGTCATCGGCATAGTCCCCGCCCTCGTCGACTCCGACGACCTCTGGCCCAACCAAGGCTTCTACGTCCAGCTCTCCGACTCCCTCAACTCCACCTACGTCTCCCTCTCCGAGAAAGACACCGATCTCATCCTCGCCAACCGCCTCCAGCTCGGCCAGTTCGTCTACATCGACCGCTTCGATTTCGACTCTCCGGTGCCGCGCATCGCCGGAATCAACCCCATCGCTGGCCGCCACCCCTTCGTCGGTTCGCAGGAGCCTCTGGTGGCGGATTTCTCCAGGGAGAAGATTGTCTGTTGGGGGAGTGAAGGACTCTGCTGCAAGGAAGAAAATAGCTACAATTGTTGCCGGAATTTTGAAGATTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF936

Protein Analysis

138

Amino Acids

15.4

Weight (kDa)

4.55

Isoelectric Point (pI)

36.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF936 PF06075 1 - 106 4.5e-45 Plant protein of unknown function (DUF936)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 244
AccI GTMKAC 2 cut(s) 78, 213
AccII CGCG 1 cut(s) 250
AciI CCGC 7 cut(s) 9, 69, 190, 223, 248, 280, 317
AcoI YGGCCR 2 cut(s) 202, 277
AcsI RAATTY 1 cut(s) 400
AfiI CCNNNNNNNGG 3 cut(s) 104, 275, 293
AgsI TTSAA 1 cut(s) 407
AjnI CCWGG 1 cut(s) 326
AjuI GAANNNNNNNTTGG 2 cut(s) 92, 124
AluBI AGCT 3 cut(s) 121, 199, 384
AluI AGCT 3 cut(s) 121, 199, 384
Alw26I GTCTC 1 cut(s) 154
AoxI GGCC 3 cut(s) 95, 202, 277
ApeKI GCWGC 1 cut(s) 366
ApoI RAATTY 1 cut(s) 400
AspLEI GCGC 1 cut(s) 252
AspS9I GGNCC 1 cut(s) 96
AsuHPI GGTGA 1 cut(s) 13
BanI GGYRCC 1 cut(s) 244
BbvI GCAGC 1 cut(s) 353
BccI CCATC 2 cut(s) 20, 278
BciT130I CCWGG 1 cut(s) 328
BcoDI GTCTC 1 cut(s) 154
BisI GCNGC 3 cut(s) 248, 280, 367
BlsI GCNGC 3 cut(s) 249, 281, 368
Bme1390I CCNGG 1 cut(s) 328
BmgT120I GGNCC 1 cut(s) 96
BmiI GGNNCC 2 cut(s) 246, 306
BmrFI CCNGG 1 cut(s) 328
BmsI GCATC 1 cut(s) 261
BpmI CTGGAG 2 cut(s) 179, 310
BsaJI CCNNGG 2 cut(s) 103, 327
BsaWI WCCGGW 1 cut(s) 241
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 275, 293
Bse118I RCCGGY 1 cut(s) 23
Bse1I ACTGG 1 cut(s) 205
BseBI CCWGG 1 cut(s) 328
BseDI CCNNGG 2 cut(s) 103, 327
BseGI GGATG 1 cut(s) 177
BseLI CCNNNNNNNGG 3 cut(s) 104, 275, 293
BseNI ACTGG 1 cut(s) 205
BseXI GCAGC 1 cut(s) 353
Bsh1236I CGCG 1 cut(s) 250
Bsh1285I CGRYCG 1 cut(s) 223
BshFI GGCC 3 cut(s) 97, 204, 279
BshNI GGYRCC 1 cut(s) 244
BsiEI CGRYCG 1 cut(s) 223
BsiSI CCGG 4 cut(s) 24, 242, 258, 397
BslFI GGGAC 1 cut(s) 50
BslI CCNNNNNNNGG 3 cut(s) 104, 275, 293
BsmAI GTCTC 1 cut(s) 154
BsmBI CGTCTC 1 cut(s) 154
BsmFI GGGAC 1 cut(s) 50
BsnI GGCC 3 cut(s) 97, 204, 279
Bsp143I GATC 1 cut(s) 172
BspACI CCGC 7 cut(s) 9, 69, 190, 223, 248, 280, 317
BspANI GGCC 3 cut(s) 97, 204, 279
BspFNI CGCG 1 cut(s) 250
BspLI GGNNCC 2 cut(s) 246, 306
BspT107I GGYRCC 1 cut(s) 244
BsrFI RCCGGY 1 cut(s) 23
BsrI ACTGG 1 cut(s) 205
BssAI RCCGGY 1 cut(s) 23
BssECI CCNNGG 2 cut(s) 103, 327
BssMI GATC 1 cut(s) 172
BssT1I CCWWGG 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 328
BstC8I GCNNGC 1 cut(s) 277
BstF5I GGATG 1 cut(s) 177
BstFNI CGCG 1 cut(s) 250
BstHHI GCGC 1 cut(s) 252
BstKTI GATC 1 cut(s) 175
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 1 cut(s) 172
BstMCI CGRYCG 1 cut(s) 223
BstNI CCWGG 1 cut(s) 328
BstSCI CCNGG 1 cut(s) 326
BstUI CGCG 1 cut(s) 250
BstV1I GCAGC 1 cut(s) 353
BsuRI GGCC 3 cut(s) 97, 204, 279
BtgZI GCGATG 2 cut(s) 238, 256
BtsCI GGATG 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 277
CfoI GCGC 1 cut(s) 252
Cfr10I RCCGGY 1 cut(s) 23
Cfr13I GGNCC 1 cut(s) 96
CviJI RGCY 8 cut(s) 97, 108, 121, 199, 204, 279, 307, 384
CviKI_1 RGCY 8 cut(s) 97, 108, 121, 199, 204, 279, 307, 384
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
EaeI YGGCCR 2 cut(s) 202, 277
EciI GGCGGA 1 cut(s) 332
Eco130I CCWWGG 1 cut(s) 103
EcoRII CCWGG 1 cut(s) 326
EcoT14I CCWWGG 1 cut(s) 103
ErhI CCWWGG 1 cut(s) 103
Esp3I CGTCTC 1 cut(s) 154
FaiI YATR 1 cut(s) 62
FaqI GGGAC 1 cut(s) 50
FauI CCCGC 1 cut(s) 76
FblI GTMKAC 2 cut(s) 78, 213
Fnu4HI GCNGC 3 cut(s) 248, 280, 367
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 3 cut(s) 248, 280, 367
GlaI GCGC 1 cut(s) 251
GluI GCNGC 3 cut(s) 248, 280, 367
GsuI CTGGAG 2 cut(s) 179, 310
HaeIII GGCC 3 cut(s) 97, 204, 279
HapII CCGG 4 cut(s) 24, 242, 258, 397
HhaI GCGC 1 cut(s) 252
Hin6I GCGC 1 cut(s) 250
HinP1I GCGC 1 cut(s) 250
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HinfI GANTC 5 cut(s) 80, 128, 236, 261, 360
HpaII CCGG 4 cut(s) 24, 242, 258, 397
HphI GGTGA 1 cut(s) 13
Hpy166II GTNNAC 2 cut(s) 79, 214
Hpy188I TCNGA 4 cut(s) 85, 127, 160, 416
Hpy8I GTNNAC 2 cut(s) 79, 214
Hpy99I CGWCG 3 cut(s) 80, 89, 296
HpyAV CCTTC 2 cut(s) 298, 350
HpyCH4IV ACGT 2 cut(s) 114, 147
HpyCH4V TGCA 1 cut(s) 369
HpySE526I ACGT 2 cut(s) 114, 147
HspAI GCGC 1 cut(s) 250
Kzo9I GATC 1 cut(s) 172
LmnI GCTCC 2 cut(s) 51, 304
Lsp1109I GCAGC 1 cut(s) 353
LweI GCATC 1 cut(s) 261
MaeII ACGT 2 cut(s) 114, 147
MaeIII GTNAC 1 cut(s) 19
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 2 cut(s) 346, 386
MfeI CAATTG 1 cut(s) 388
MluCI AATT 2 cut(s) 388, 400
MlyI GAGTC 4 cut(s) 74, 122, 230, 354
MmeI TCCRAC 2 cut(s) 108, 150
MnlI CCTC 7 cut(s) 83, 101, 143, 164, 191, 203, 318
MspI CCGG 4 cut(s) 24, 242, 258, 397
MspR9I CCNGG 1 cut(s) 328
MunI CAATTG 1 cut(s) 388
MvaI CCWGG 1 cut(s) 328
MvnI CGCG 1 cut(s) 250
NdeII GATC 1 cut(s) 172
NlaIV GGNNCC 2 cut(s) 246, 306
NmeAIII GCCGAG 1 cut(s) 180
NmuCI GTSAC 1 cut(s) 19
PcsI WCGNNNNNNNCGW 5 cut(s) 81, 84, 207, 216, 225
PfeI GAWTC 1 cut(s) 261
PkrI GCNGC 3 cut(s) 249, 281, 368
PleI GAGTC 4 cut(s) 74, 122, 230, 354
PpsI GAGTC 4 cut(s) 74, 122, 230, 354
Psp6I CCWGG 1 cut(s) 326
PspGI CCWGG 1 cut(s) 326
PspN4I GGNNCC 2 cut(s) 246, 306
PspPI GGNCC 1 cut(s) 96
SalI GTCGAC 1 cut(s) 77
SatI GCNGC 3 cut(s) 248, 280, 367
Sau3AI GATC 1 cut(s) 172
Sau96I GGNCC 1 cut(s) 96
SchI GAGTC 4 cut(s) 74, 122, 230, 354
ScrFI CCNGG 1 cut(s) 328
SetI ASST 7 cut(s) 93, 117, 123, 146, 150, 201, 386
SfaNI GCATC 1 cut(s) 261
SgrAI CRCCGGYG 1 cut(s) 23
Sse9I AATT 2 cut(s) 388, 400
SsiI CCGC 7 cut(s) 9, 69, 190, 223, 248, 280, 317
StyD4I CCNGG 1 cut(s) 326
StyI CCWWGG 1 cut(s) 103
TaiI ACGT 2 cut(s) 117, 150
TaqI TCGA 4 cut(s) 78, 219, 228, 234
TasI AATT 2 cut(s) 388, 400
TauI GCSGC 2 cut(s) 250, 282
TfiI GAWTC 1 cut(s) 261
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 366
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 400
XmiI GTMKAC 2 cut(s) 78, 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.