Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005561

Physical Location & Seq

Genomic Coordinates Reverse (-)

35394613 .. 35395937

Gene Structure 1325 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0203500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGCCAACATTTATACTAATAAAAAGAAACGGAGGTTTGTTGTTAGAAAGACAGTTATCATCTGGTGAAGTTAATCTTGAGAAAATTAAGTTGTTCAAATCAAAAGAGTTGGAGAAGTCCACTGATAATTTTCATGTTGATAGAATCCTTGGCAAAGGTGGCCAAGGGACTGTCTACAAAGGTATGCTAACAGATGGAAGAATCGTTGCAGTAAAAAGGTCTACAAAAGTGGACGAAGGTAGACTTTCACAGTTTATAAATGAGGTTGTTATTCTTTCACAAATCAACCACAGGAATGTGGTTAAACTATTGGGTTGTTGTTTAGAGACAGAGGTTCCTCTTTTGGTCTATGAGTTTATTCCGAATGGATCCCTTTCCCAATATATCCATGAGCAGCACGAGGATTTTCCACTTACGTGGGAATTGCGCTTAAGGATTGCCACGGAAATTGCAGGAGCTCTTTCCTACTTACACGGTGCAGCTTCAATTCCCATAATTCATAGAGACATCAAGTCGACAAATATATTGCTAGATGAAAAATACAGAGCAAAAATTGCCGACTTTGGAACTTCTAGATCAGTTGCCATAGACCAAACTCACTTGACCACACTTGTATATGGGACATTTGGTTACTTGGACCCAGAATACTTCCAGTCGAGCCAATTTACGGATAAAAGTGATGTGTATAGCTTTGGAGTGGTTCTTGTTGAACTCTTGAGTGGACAAAAACCAATCTCTGTGACAAGATCACAAGAAGAAGGTCGGAGTCTTGCAACACATTTCATTATTTTGATGCAGGATGATCGGCTATTTGAAGTTGTTGATGCTCGAGTTTTGAATGAAGCCTCTAAAGAAGATATCTTACTAGTTGCCAACCTTGCAAGAAGATGTTTGCATTTGAATGGTAGGAACCGCCCCACAATGAGAGAGGTAACAGCAGAGCTGGAGGGGATTCAAATGTCACAAAAAACAACTAATGGTGAGCAAAATTATGAAGAGGTTGATATTGTCAGGTATGATTCAATTGAGCCATGGGATGTTGCTTCAACTTCAACAGGAACCGTAACAGGAACAAGGTCAGGTGTTGCTGCTGGTCCGCCTTCATCACCATCGCAAGGAATTGCACTGTTATCTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF936

Protein Analysis

379

Amino Acids

42.21

Weight (kDa)

5.79

Isoelectric Point (pI)

34.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	44 - 312	8.9e-50	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	45 - 315	2.5e-49	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005561)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0111591
rosa_multiflora	Rmu_co8457875.1_g000001 Rmu_sc0001231.1_g000024 Rmu_sc0003693.1_g000012 Rmu_sc0017377.1_g000002 Rmu_sc0020611.1_g000015 Rmu_sc0021422.1_g000001 Rmu_sc0039657.1_g000001 Rmu_ssc0000049.1_g000002
rosa_roxburghii	Rroxscaffold_2G00113100 Rroxscaffold_2G00138830
rosa_rugosa	Rorug01G0262700 Rorug02G0248600 Rorug03G0200700 Rorug04G0203500
rosa_samantha	Rh2AG227800 Rh2AG521100 Rh2BG316300 Rh2CG506100 Rh2DG235900 Rh3CG369900 Rh4BG266200 Rh4CG091300 Rh5BG544200 Rh5CG567800 Rh5DG200900 Rh6AG031000 Rh7BG443100 Rh7CG445100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	257
AccI	GTMKAC	4 cut(s)	174, 221, 241, 515
AciI	CCGC	2 cut(s)	913, 1097
AclWI	GGATC	2 cut(s)	363, 376
AcoI	YGGCCR	1 cut(s)	160
AfiI	CCNNNNNNNGG	2 cut(s)	667, 1115
AflII	CTTAAG	1 cut(s)	430
AhdI	GACNNNNNGTC	1 cut(s)	511
AhlI	ACTAGT	1 cut(s)	865
AleI	CACNNNNGTG	1 cut(s)	415
AluBI	AGCT	4 cut(s)	458, 482, 690, 943
AluI	AGCT	4 cut(s)	458, 482, 690, 943
Alw21I	GWGCWC	1 cut(s)	460
Alw26I	GTCTC	2 cut(s)	320, 498
AlwI	GGATC	2 cut(s)	363, 376
Ama87I	CYCGRG	1 cut(s)	828
AoxI	GGCC	1 cut(s)	160
ApeKI	GCWGC	3 cut(s)	394, 479, 1088
AspLEI	GCGC	1 cut(s)	429
AspS9I	GGNCC	2 cut(s)	637, 1094
AsuHPI	GGTGA	3 cut(s)	77, 992, 1098
AvaI	CYCGRG	1 cut(s)	828
AvaII	GGWCC	2 cut(s)	637, 1094
BalI	TGGCCA	1 cut(s)	162
BamHI	GGATCC	1 cut(s)	368
BanII	GRGCYC	1 cut(s)	460
BarI	GAAGNNNNNNTAC	2 cut(s)	846, 878
BauI	CACGAG	1 cut(s)	398
Bbv12I	GWGCWC	1 cut(s)	460
BbvI	GCAGC	3 cut(s)	406, 491, 1075
BccI	CCATC	2 cut(s)	188, 1117
BcgI	CGANNNNNNTGC	2 cut(s)	785, 819
BcoDI	GTCTC	2 cut(s)	320, 498
BcuI	ACTAGT	1 cut(s)	865
BfaI	CTAG	4 cut(s)	530, 573, 866, 1138
BfrI	CTTAAG	1 cut(s)	430
BisI	GCNGC	3 cut(s)	395, 480, 1089
BlsI	GCNGC	3 cut(s)	396, 481, 1090
Bme18I	GGWCC	2 cut(s)	637, 1094
BmeRI	GACNNNNNGTC	1 cut(s)	511
BmeT110I	CYCGRG	1 cut(s)	828
BmgT120I	GGNCC	2 cut(s)	637, 1094
BmiI	GGNNCC	5 cut(s)	336, 370, 639, 911, 1060
BmsI	GCATC	2 cut(s)	783, 814
BpmI	CTGGAG	1 cut(s)	965
BpuEI	CTTGAG	2 cut(s)	98, 736
BsaAI	YACGTR	1 cut(s)	417
BsaJI	CCNNGG	4 cut(s)	148, 163, 441, 1031
Bsc4I	CCNNNNNNNGG	2 cut(s)	667, 1115
Bse1I	ACTGG	1 cut(s)	652
BseDI	CCNNGG	4 cut(s)	148, 163, 441, 1031
BseGI	GGATG	2 cut(s)	805, 1042
BseLI	CCNNNNNNNGG	2 cut(s)	667, 1115
BseNI	ACTGG	1 cut(s)	652
BseXI	GCAGC	3 cut(s)	406, 491, 1075
BsgI	GTGCAG	1 cut(s)	498
BshFI	GGCC	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	460
BsiHKCI	CYCGRG	1 cut(s)	828
BslFI	GGGAC	2 cut(s)	181, 634
BslI	CCNNNNNNNGG	2 cut(s)	667, 1115
BsmAI	GTCTC	2 cut(s)	320, 498
BsmFI	GGGAC	2 cut(s)	181, 634
BsnI	GGCC	1 cut(s)	162
BsoBI	CYCGRG	1 cut(s)	828
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp143I	GATC	4 cut(s)	368, 575, 746, 802
Bsp19I	CCATGG	1 cut(s)	1031
BspACI	CCGC	2 cut(s)	913, 1097
BspANI	GGCC	1 cut(s)	162
BspLI	GGNNCC	5 cut(s)	336, 370, 639, 911, 1060
BspPI	GGATC	2 cut(s)	363, 376
BspTI	CTTAAG	1 cut(s)	430
BsrI	ACTGG	1 cut(s)	652
BssECI	CCNNGG	4 cut(s)	148, 163, 441, 1031
BssMI	GATC	4 cut(s)	368, 575, 746, 802
BssSI	CACGAG	1 cut(s)	398
BssT1I	CCWWGG	3 cut(s)	148, 163, 1031
Bst2BI	CACGAG	1 cut(s)	398
Bst4CI	ACNGT	6 cut(s)	54, 172, 252, 476, 1063, 1128
Bst6I	CTCTTC	1 cut(s)	990
BstAFI	CTTAAG	1 cut(s)	430
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstBAI	YACGTR	1 cut(s)	417
BstDSI	CCRYGG	2 cut(s)	441, 1031
BstF5I	GGATG	2 cut(s)	805, 1042
BstHHI	GCGC	1 cut(s)	429
BstKTI	GATC	4 cut(s)	371, 578, 749, 805
BstMAI	GTCTC	2 cut(s)	320, 498
BstMBI	GATC	4 cut(s)	368, 575, 746, 802
BstMWI	GCNNNNNNNGC	3 cut(s)	159, 554, 878
BstV1I	GCAGC	3 cut(s)	406, 491, 1075
BstX2I	RGATCY	1 cut(s)	368
BstXI	CCANNNNNNTGG	1 cut(s)	417
BstYI	RGATCY	1 cut(s)	368
BsuRI	GGCC	1 cut(s)	162
BtgI	CCRYGG	2 cut(s)	441, 1031
BtgZI	GCGATG	1 cut(s)	1095
BtsCI	GGATG	2 cut(s)	805, 1042
BtsIMutI	CAGTG	2 cut(s)	120, 1124
CfoI	GCGC	1 cut(s)	429
Cfr13I	GGNCC	2 cut(s)	637, 1094
CspCI	CAANNNNNGTGG	2 cut(s)	430, 465
CviAII	CATG	3 cut(s)	134, 389, 1032
CviJI	RGCY	9 cut(s)	162, 458, 482, 660, 690, 808, 845, 943, 1030
CviKI_1	RGCY	9 cut(s)	162, 458, 482, 660, 690, 808, 845, 943, 1030
DpnI	GATC	4 cut(s)	370, 577, 748, 804
DpnII	GATC	4 cut(s)	368, 575, 746, 802
DriI	GACNNNNNGTC	1 cut(s)	511
EaeI	YGGCCR	1 cut(s)	160
Eam1104I	CTCTTC	1 cut(s)	990
Eam1105I	GACNNNNNGTC	1 cut(s)	511
EarI	CTCTTC	1 cut(s)	990
EciI	GGCGGA	1 cut(s)	1086
Ecl136II	GAGCTC	1 cut(s)	458
Eco130I	CCWWGG	3 cut(s)	148, 163, 1031
Eco24I	GRGCYC	1 cut(s)	460
Eco32I	GATATC	1 cut(s)	859
Eco47I	GGWCC	2 cut(s)	637, 1094
Eco53kI	GAGCTC	1 cut(s)	458
Eco88I	CYCGRG	1 cut(s)	828
EcoICRI	GAGCTC	1 cut(s)	458
EcoRV	GATATC	1 cut(s)	859
EcoT14I	CCWWGG	3 cut(s)	148, 163, 1031
EcoT38I	GRGCYC	1 cut(s)	460
ErhI	CCWWGG	3 cut(s)	148, 163, 1031
FaeI	CATG	3 cut(s)	137, 392, 1035
FalI	AAGNNNNNCTT	4 cut(s)	60, 92, 228, 260
FaqI	GGGAC	2 cut(s)	181, 634
FatI	CATG	3 cut(s)	133, 388, 1031
FblI	GTMKAC	4 cut(s)	174, 221, 241, 515
Fnu4HI	GCNGC	3 cut(s)	395, 480, 1089
FokI	GGATG	2 cut(s)	812, 1049
FriOI	GRGCYC	1 cut(s)	460
Fsp4HI	GCNGC	3 cut(s)	395, 480, 1089
FspBI	CTAG	4 cut(s)	530, 573, 866, 1138
GlaI	GCGC	1 cut(s)	428
GluI	GCNGC	3 cut(s)	395, 480, 1089
GsuI	CTGGAG	1 cut(s)	965
HaeIII	GGCC	1 cut(s)	162
HhaI	GCGC	1 cut(s)	429
Hin1II	CATG	3 cut(s)	137, 392, 1035
Hin6I	GCGC	1 cut(s)	427
HinP1I	GCGC	1 cut(s)	427
HincII	GTYRAC	1 cut(s)	516
HindII	GTYRAC	1 cut(s)	516
HinfI	GANTC	5 cut(s)	144, 201, 766, 952, 1019
HphI	GGTGA	3 cut(s)	77, 992, 1098
Hpy166II	GTNNAC	7 cut(s)	120, 175, 222, 232, 242, 516, 722
Hpy188I	TCNGA	2 cut(s)	363, 765
Hpy188III	TCNNGA	3 cut(s)	77, 573, 715
Hpy8I	GTNNAC	7 cut(s)	120, 175, 222, 232, 242, 516, 722
HpyAV	CCTTC	3 cut(s)	230, 752, 1110
HpyCH4III	ACNGT	6 cut(s)	54, 172, 252, 476, 1063, 1128
HpyCH4IV	ACGT	1 cut(s)	416
HpyCH4V	TGCA	8 cut(s)	209, 452, 479, 773, 796, 881, 895, 1124
HpyF10VI	GCNNNNNNNGC	3 cut(s)	159, 554, 878
HpySE526I	ACGT	1 cut(s)	416
Hsp92II	CATG	3 cut(s)	137, 392, 1035
HspAI	GCGC	1 cut(s)	427
Kzo9I	GATC	4 cut(s)	368, 575, 746, 802
LmnI	GCTCC	1 cut(s)	455
Lsp1109I	GCAGC	3 cut(s)	406, 491, 1075
LweI	GCATC	2 cut(s)	783, 814
MaeI	CTAG	4 cut(s)	530, 573, 866, 1138
MaeII	ACGT	1 cut(s)	416
MaeIII	GTNAC	5 cut(s)	629, 739, 931, 960, 1063
MalI	GATC	4 cut(s)	370, 577, 748, 804
MboI	GATC	4 cut(s)	368, 575, 746, 802
MboII	GAAGA	5 cut(s)	210, 767, 866, 897, 1007
MfeI	CAATTG	1 cut(s)	1023
MflI	RGATCY	1 cut(s)	368
MhlI	GDGCHC	1 cut(s)	460
MlsI	TGGCCA	1 cut(s)	162
MluNI	TGGCCA	1 cut(s)	162
MlyI	GAGTC	1 cut(s)	775
MmeI	TCCRAC	2 cut(s)	90, 743
MnlI	CCTC	9 cut(s)	26, 256, 325, 348, 394, 856, 922, 940, 991
Mox20I	TGGCCA	1 cut(s)	162
MscI	TGGCCA	1 cut(s)	162
MseI	TTAA	4 cut(s)	72, 87, 303, 431
MslI	CAYNNNNRTG	3 cut(s)	294, 415, 900
Msp20I	TGGCCA	1 cut(s)	162
MspCI	CTTAAG	1 cut(s)	430
MunI	CAATTG	1 cut(s)	1023
MwoI	GCNNNNNNNGC	3 cut(s)	159, 554, 878
NcoI	CCATGG	1 cut(s)	1031
NdeII	GATC	4 cut(s)	368, 575, 746, 802
NlaIII	CATG	3 cut(s)	137, 392, 1035
NlaIV	GGNNCC	5 cut(s)	336, 370, 639, 911, 1060
NmuCI	GTSAC	2 cut(s)	739, 960
OliI	CACNNNNGTG	1 cut(s)	415
PaeR7I	CTCGAG	1 cut(s)	828
PfeI	GAWTC	4 cut(s)	144, 201, 952, 1019
PkrI	GCNGC	3 cut(s)	396, 481, 1090
PleI	GAGTC	1 cut(s)	774
PpsI	GAGTC	1 cut(s)	774
Ppu21I	YACGTR	1 cut(s)	417
PsiI	TTATAA	1 cut(s)	257
Psp124BI	GAGCTC	1 cut(s)	460
PspN4I	GGNNCC	5 cut(s)	336, 370, 639, 911, 1060
PspPI	GGNCC	2 cut(s)	637, 1094
PspXI	VCTCGAGB	1 cut(s)	828
PsuI	RGATCY	1 cut(s)	368
RseI	CAYNNNNRTG	3 cut(s)	294, 415, 900
SacI	GAGCTC	1 cut(s)	460
SalI	GTCGAC	1 cut(s)	514
SaqAI	TTAA	4 cut(s)	72, 87, 303, 431
SatI	GCNGC	3 cut(s)	395, 480, 1089
Sau3AI	GATC	4 cut(s)	368, 575, 746, 802
Sau96I	GGNCC	2 cut(s)	637, 1094
SchI	GAGTC	1 cut(s)	775
SduI	GDGCHC	1 cut(s)	460
SfaNI	GCATC	2 cut(s)	783, 814
Sfr274I	CTCGAG	1 cut(s)	828
SinI	GGWCC	2 cut(s)	637, 1094
SlaI	CTCGAG	1 cut(s)	828
SmiMI	CAYNNNNRTG	3 cut(s)	294, 415, 900
SmlI	CTYRAG	4 cut(s)	77, 430, 715, 828
SmoI	CTYRAG	4 cut(s)	77, 430, 715, 828
SpeI	ACTAGT	1 cut(s)	865
SsiI	CCGC	2 cut(s)	913, 1097
SspMI	CTAG	4 cut(s)	530, 573, 866, 1138
SstI	GAGCTC	1 cut(s)	460
StyI	CCWWGG	3 cut(s)	148, 163, 1031
TaaI	ACNGT	6 cut(s)	54, 172, 252, 476, 1063, 1128
TaiI	ACGT	1 cut(s)	419
TaqI	TCGA	3 cut(s)	515, 656, 829
TfiI	GAWTC	4 cut(s)	144, 201, 952, 1019
Tru1I	TTAA	4 cut(s)	72, 87, 303, 431
Tru9I	TTAA	4 cut(s)	72, 87, 303, 431
TscAI	CASTG	2 cut(s)	127, 1131
TseFI	GTSAC	2 cut(s)	739, 960
TseI	GCWGC	3 cut(s)	394, 479, 1088
Tsp45I	GTSAC	2 cut(s)	739, 960
TspDTI	ATGAA	7 cut(s)	122, 488, 549, 772, 855, 1008, 1092
TspGWI	ACGGA	3 cut(s)	45, 458, 683
TspRI	CASTG	2 cut(s)	127, 1131
Vha464I	CTTAAG	1 cut(s)	430
VpaK11BI	GGWCC	2 cut(s)	637, 1094
XbaI	TCTAGA	1 cut(s)	572
XhoI	CTCGAG	1 cut(s)	828
XmiI	GTMKAC	4 cut(s)	174, 221, 241, 515
XspI	CTAG	4 cut(s)	530, 573, 866, 1138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.